g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011262
Unique Nameg.arboreum_cottongen_reftransV1_0011262
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length806
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0011262:1..806 .
Chr4:73558366..73559171 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B0NAB2_GOSAR (FACT complex subunit SPT16-like protein OS=Gossypium arboreum GN=F383_11290 PE=4 SV=1)

HSP 1 Score: 526.939 bits (1356), Expect = 1.909e-176
Identity = 264/268 (98.51%), Postives = 268/268 (100.00%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVP+KASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  673 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 940          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0D2W816_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G209300 PE=4 SV=1)

HSP 1 Score: 525.398 bits (1352), Expect = 6.212e-176
Identity = 263/268 (98.13%), Postives = 267/268 (99.63%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLPDLWIRPVFGGRGRKIPGTLE HVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVP+KASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  673 FKPIRLPDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 940          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B0MRE4_GOSAR (FACT complex subunit SPT16-like protein OS=Gossypium arboreum GN=F383_00943 PE=4 SV=1)

HSP 1 Score: 525.398 bits (1352), Expect = 7.168e-176
Identity = 264/268 (98.51%), Postives = 266/268 (99.25%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRKIPGTLE HVNGFRYSTTRADERVD+MYGNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIRLSDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0D2TPK9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G308600 PE=4 SV=1)

HSP 1 Score: 524.242 bits (1349), Expect = 2.187e-175
Identity = 263/268 (98.13%), Postives = 266/268 (99.25%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRKIPGTLE HVNGFRYSTTRADERVD+MYGNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIRLSDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A061F3Y4_THECC (Global transcription factor C isoform 1 OS=Theobroma cacao GN=TCM_026818 PE=4 SV=1)

HSP 1 Score: 522.316 bits (1344), Expect = 1.069e-174
Identity = 261/268 (97.39%), Postives = 265/268 (98.88%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTRADERVD+MYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIRLSDLWIRPPFGGRGRKIPGTLEVHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 941          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: W9RSN6_9ROSA (FACT complex subunit SPT16 OS=Morus notabilis GN=L484_005993 PE=4 SV=1)

HSP 1 Score: 509.22 bits (1310), Expect = 1.300e-169
Identity = 252/268 (94.03%), Postives = 263/268 (98.13%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLPDLWIRPVFGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+ NIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINM+FQSFVNRVNDLWGQPQF+GLDLEFDQPLRELGFHGVP+K+SAFIVPTS+CLVEL+ETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPST+LDGI+EWLDTTDIKYYESRLNLNWRQILK ITDDPQ
Sbjct:  676 FKPIRLPDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFANIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMNFQSFVNRVNDLWGQPQFSGLDLEFDQPLRELGFHGVPFKSSAFIVPTSTCLVELIETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTALDGIEEWLDTTDIKYYESRLNLNWRQILKAITDDPQ 943          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A059AEK2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01613 PE=4 SV=1)

HSP 1 Score: 508.064 bits (1307), Expect = 1.732e-169
Identity = 252/268 (94.03%), Postives = 262/268 (97.76%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             KPI+L DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+++GNIKHAFFQPAEKEMITLLHFHLHNHIMVGN+KTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYKASAFIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 MKPIKLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDILFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNRKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKASAFIVPTSTCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A059AEV5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01613 PE=4 SV=1)

HSP 1 Score: 508.834 bits (1309), Expect = 3.561e-169
Identity = 252/268 (94.03%), Postives = 262/268 (97.76%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             KPI+L DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+++GNIKHAFFQPAEKEMITLLHFHLHNHIMVGN+KTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYKASAFIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 MKPIKLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDILFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNRKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKASAFIVPTSTCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: M5W3N0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000613mg PE=4 SV=1)

HSP 1 Score: 508.064 bits (1307), Expect = 3.757e-169
Identity = 253/268 (94.40%), Postives = 261/268 (97.39%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRKIPGTLE H NGFR+STTR DERVDVM+ NIKHAFFQPAE EMITLLHFHLHNHIMVG KKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYK+SAFIVPTS+CLVEL+ETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPST+LDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  680 FKPIRLSDLWIRPVFGGRGRKIPGTLEAHANGFRFSTTRQDERVDVMFPNIKHAFFQPAENEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKSSAFIVPTSTCLVELIETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTALDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 947          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A059AEB0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01613 PE=4 SV=1)

HSP 1 Score: 508.449 bits (1308), Expect = 5.549e-169
Identity = 252/268 (94.03%), Postives = 262/268 (97.76%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             KPI+L DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+++GNIKHAFFQPAEKEMITLLHFHLHNHIMVGN+KTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYKASAFIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 MKPIKLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDILFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNRKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKASAFIVPTSTCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CANAL (FACT complex subunit SPT16 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 6.902e-63
Identity = 124/273 (45.42%), Postives = 173/273 (63.37%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-------STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +L +++IRP      +KI G L+ H NG RY       S  + D+RVDV++ NIKH FFQP + E+I L+H HL N IM+G +KT DVQFY E  D+     GG++  Y     DE+++EQ ER RK  ++ +F+ F   + D       +G+ ++ D P RELGF GVP+++S   VPT  CLV+L++ P+LVV+L EIEI +LERV  G KNFD+  VFKDF K V+ I++IP   L+ +K WL   DI   E ++NLNW QI+KT+  DP
Sbjct:  698 KLNNVFIRPT--PDTKKIGGVLQIHENGLRYQSQPQSQSNFKNDQRVDVLFSNIKHLFFQPCKDELIVLIHCHLKNPIMIGKRKTFDVQFYREASDMAFDETGGRKRKYRYGDEDELQQEQEERRRKALLDKEFKGFAELIAD-----SSHGM-VDLDIPFRELGFQGVPFRSSVLCVPTRDCLVQLIDPPYLVVTLEEIEIAHLERVQFGLKNFDLVFVFKDFNKPVVHINTIPVELLEDVKSWLTDVDIPISEGQMNLNWVQIMKTVLADP 962          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ASHGO (FACT complex subunit SPT16 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SPT16 PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 1.651e-61
Identity = 121/272 (44.49%), Postives = 172/272 (63.24%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDV-VQTLGGGKRSAYX------XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            RL  +++RP      +++PGT+  H NG RY S  R D R+D+++ N+K+ FFQP + E+I ++H HL N I++G KK +DVQFY E  D+ V   G G+R+          DE+E+EQ ER ++  ++ +F+ F   + +       NGL +E D P R+LGF GVP +++ F +PT  CL++LVE PFLVV+LSE+EI  LERV  G KNFDM  V+KDF K V  I++IP   L+ IK WL   DI Y  S +NLNW  I+K++ DDP 
Sbjct:  675 RLDQIFVRP--SPDTKRVPGTVFIHENGIRYQSPLRTDSRIDILFSNVKNLFFQPCKGELIVIIHIHLKNPILMGKKKIQDVQFYREASDMAVDETGNGRRNQMKFRRYGDEDELEQEQEERRKRAALDKEFRYFAEAIAEAS-----NGL-VEVDHPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVVNLSEVEICILERVQFGLKNFDMVFVYKDFTKPVTHINTIPIEQLEFIKSWLTDVDIPYTVSTINLNWATIMKSLQDDPH 938          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_NEUCR (FACT complex subunit ctc-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ctc-2 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.747e-61
Identity = 115/268 (42.91%), Postives = 179/268 (66.79%), Query Frame = 2
Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKK-TKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTIT 793
            +P  L +++IRP     G+++PG +E H NG RY S     +RVD+++ N++H FFQP + E+I ++H HL + I++GNKK TKDVQFY E  D+     G ++  Y     DE E EQ ER R+ +++  F+SF  ++ +  G+ +     +E D PLR+LGF+GVP++++ +I PT+ CL+++ E PF+V++L +IE+ +LERV  G KNFD+  VFKDF +    I++IP  SL+ +KE+LD++DI + E  LNLNW  I+KT+T
Sbjct:  666 RPAVLDNVFIRPAM--EGKRVPGKVEIHQNGIRYQSPLSTTQRVDILFSNVRHLFFQPCQHELIVIIHIHLKDPIIIGNKKKTKDVQFYREATDIQFDETGNRKRKYRYGDEDEFEAEQEERRRRAELDRLFKSFAEKIAEA-GRNE----GIEVDMPLRDLGFNGVPFRSNVYIQPTTECLIQITEPPFMVITLEDIEVAHLERVQFGLKNFDLVFVFKDFTRPPYHINTIPVESLEDVKEFLDSSDIAFSEGPLNLNWGVIMKTVT 926          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_YEAST (FACT complex subunit SPT16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT16 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.762e-57
Identity = 115/271 (42.44%), Postives = 170/271 (62.73%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDV-VQTLGGGKRSAYX------XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            RL  +++RP      +++P T+  H NG R+ S  R D R+D+++ NIK+  FQ  + E+I ++H HL N I++G KK +DVQFY E  D+ V   GGG+R           DE+E+EQ ER ++  ++ +F+ F + + +       NGL L  +   R+LGF GVP +++ F +PT+ CLV+L+E PFLV++L E+EI  LERV  G KNFDM  V+KDF K V  I+++P  SLD +K+WL   DI Y  S +NLNW  I+K++ DDP
Sbjct:  679 RLDQIFVRP--NPDTKRVPSTVFIHENGIRFQSPLRTDSRIDILFSNIKNLIFQSCKGELIVVIHIHLKNPILMGKKKIQDVQFYREASDMSVDETGGGRRGQSRFRRYGDEDELEQEQEERRKRAALDKEFKYFADAIAEAS-----NGL-LTVENTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVINLEEVEICILERVQFGLKNFDMVFVYKDFNKPVTHINTVPIESLDFLKQWLTDMDIPYTVSTINLNWATIMKSLQDDP 941          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_KLULA (FACT complex subunit SPT16 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SPT16 PE=3 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 5.106e-57
Identity = 114/272 (41.91%), Postives = 170/272 (62.50%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDV-VQTLGGGKRSAYX------XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            RL  +++RP      +++PGT+  H NG RY S  R D R+D+++ NIK+ FFQ ++ E+I ++H HL N I++G KK +D+QFY E  D+ V   G  +R+          DE+E+EQ ER ++  ++ +F+ F   + +       +GL L+ D P R+LGF GVP +++ F +PT  CL++LVE PFLV++L+E+EI  LERV  G KNFDM  V+KD  K V  I+++P   L+ IK WL   DI Y  S +NLNW  I+K++ DDP 
Sbjct:  676 RLDQIFVRP--SPDTKRVPGTVFIHENGIRYQSPLRTDSRIDILFSNIKNLFFQSSKGELIVIIHVHLKNPILMGKKKIQDIQFYREASDMAVDETGNSRRNNMKFRRYGDEDELEQEQEERRKRAALDKEFRYFAEAIAE-----ASDGL-LDVDSPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVINLNEVEICILERVQFGLKNFDMVFVYKDLTKPVSHINTVPIEQLEFIKTWLTDVDIPYTVSTINLNWSTIMKSLQDDPH 939          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NAB2_GOSAR1.909e-17698.51FACT complex subunit SPT16-like protein OS=Gossypi... [more]
A0A0D2W816_GOSRA6.212e-17698.13Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0MRE4_GOSAR7.168e-17698.51FACT complex subunit SPT16-like protein OS=Gossypi... [more]
A0A0D2TPK9_GOSRA2.187e-17598.13Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061F3Y4_THECC1.069e-17497.39Global transcription factor C isoform 1 OS=Theobro... [more]
W9RSN6_9ROSA1.300e-16994.03FACT complex subunit SPT16 OS=Morus notabilis GN=L... [more]
A0A059AEK2_EUCGR1.732e-16994.03Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A059AEV5_EUCGR3.561e-16994.03Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
M5W3N0_PRUPE3.757e-16994.40Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A059AEB0_EUCGR5.549e-16994.03Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SPT16_CANAL6.902e-6345.42FACT complex subunit SPT16 OS=Candida albicans (st... [more]
SPT16_ASHGO1.651e-6144.49FACT complex subunit SPT16 OS=Ashbya gossypii (str... [more]
SPT16_NEUCR3.747e-6142.91FACT complex subunit ctc-2 OS=Neurospora crassa (s... [more]
SPT16_YEAST2.762e-5742.44FACT complex subunit SPT16 OS=Saccharomyces cerevi... [more]
SPT16_KLULA5.106e-5741.91FACT complex subunit SPT16 OS=Kluyveromyces lactis... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013719Domain of unknown function DUF1747SMARTSM01287Rtt106_2coord: 114..204
e-value: 2.7E-36
score: 136.6
IPR013719Domain of unknown function DUF1747PFAMPF08512Rtt106coord: 121..202
e-value: 1.0E-17
score: 64.2
NoneNo IPR availablePANTHERPTHR13980CDC68 RELATEDcoord: 1..222

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011262 ID=g.arboreum_cottongen_reftransV1_0011262; Name=g.arboreum_cottongen_reftransV1_0011262; organism=Gossypium arboreum; type=contig; length=806bp
GTTCAAGCCTATTAGGCTACCTGACCTTTGGATTCGTCCTGTTTTTGGTG
GTCGTGGGAGGAAGATTCCAGGAACACTTGAAACTCATGTTAATGGTTTT
CGATATTCTACTACTAGAGCTGATGAGCGTGTTGATGTTATGTATGGGAA
CATAAAGCATGCATTCTTCCAGCCTGCAGAGAAAGAAATGATCACTCTCC
TTCACTTTCATCTGCACAATCACATAATGGTGGGAAACAAAAAAACTAAA
GATGTGCAATTTTATGTTGAGGTTATGGATGTTGTCCAGACATTGGGAGG
GGGAAAGAGGTCTGCTTATGACCCTGATGAGATTGAAGAAGAGCAAAGGG
AGAGGGATAGGAAGAATAAGATCAACATGGATTTTCAGAGTTTTGTGAAC
CGGGTAAATGATCTATGGGGGCAGCCTCAGTTCAATGGTCTTGATCTTGA
GTTTGATCAACCGCTTAGAGAACTTGGCTTCCATGGGGTCCCCTACAAAG
CCTCCGCTTTTATTGTGCCAACGTCAAGCTGTTTAGTTGAGTTGGTAGAG
ACTCCTTTCCTTGTGGTCTCCTTAAGCGAGATTGAGATCGTGAACCTGGA
GAGGGTTGGCCTTGGGCAGAAAAATTTTGACATGACCATAGTGTTCAAGG
ACTTCAAGAAAGATGTACTAAGGATTGATTCCATCCCTTCAACCTCACTT
GATGGCATCAAGGAATGGCTTGATACAACAGACATAAAGTATTACGAGAG
CAGGCTGAATCTGAACTGGCGGCAGATTCTGAAGACAATCACTGACGATC
CACAGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013719RTT106/SPT16-like_middle_dom