g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0011262
Unique Name	g.arboreum_cottongen_reftransV1_0011262
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	806

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0011262:1..806 . Chr4:73558366..73559171 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B0NAB2_GOSAR (FACT complex subunit SPT16-like protein OS=Gossypium arboreum GN=F383_11290 PE=4 SV=1)

HSP 1 Score: 526.939 bits (1356), Expect = 1.909e-176
Identity = 264/268 (98.51%), Postives = 268/268 (100.00%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVP+KASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  673 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 940

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0D2W816_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G209300 PE=4 SV=1)

HSP 1 Score: 525.398 bits (1352), Expect = 6.212e-176
Identity = 263/268 (98.13%), Postives = 267/268 (99.63%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLPDLWIRPVFGGRGRKIPGTLE HVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVP+KASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  673 FKPIRLPDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 940

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B0MRE4_GOSAR (FACT complex subunit SPT16-like protein OS=Gossypium arboreum GN=F383_00943 PE=4 SV=1)

HSP 1 Score: 525.398 bits (1352), Expect = 7.168e-176
Identity = 264/268 (98.51%), Postives = 266/268 (99.25%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRKIPGTLE HVNGFRYSTTRADERVD+MYGNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIRLSDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0D2TPK9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G308600 PE=4 SV=1)

HSP 1 Score: 524.242 bits (1349), Expect = 2.187e-175
Identity = 263/268 (98.13%), Postives = 266/268 (99.25%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRKIPGTLE HVNGFRYSTTRADERVD+MYGNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIRLSDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A061F3Y4_THECC (Global transcription factor C isoform 1 OS=Theobroma cacao GN=TCM_026818 PE=4 SV=1)

HSP 1 Score: 522.316 bits (1344), Expect = 1.069e-174
Identity = 261/268 (97.39%), Postives = 265/268 (98.88%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTRADERVD+MYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIRLSDLWIRPPFGGRGRKIPGTLEVHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 941

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: W9RSN6_9ROSA (FACT complex subunit SPT16 OS=Morus notabilis GN=L484_005993 PE=4 SV=1)

HSP 1 Score: 509.22 bits (1310), Expect = 1.300e-169
Identity = 252/268 (94.03%), Postives = 263/268 (98.13%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLPDLWIRPVFGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+ NIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINM+FQSFVNRVNDLWGQPQF+GLDLEFDQPLRELGFHGVP+K+SAFIVPTS+CLVEL+ETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPST+LDGI+EWLDTTDIKYYESRLNLNWRQILK ITDDPQ
Sbjct:  676 FKPIRLPDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFANIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMNFQSFVNRVNDLWGQPQFSGLDLEFDQPLRELGFHGVPFKSSAFIVPTSTCLVELIETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTALDGIEEWLDTTDIKYYESRLNLNWRQILKAITDDPQ 943

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A059AEK2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01613 PE=4 SV=1)

HSP 1 Score: 508.064 bits (1307), Expect = 1.732e-169
Identity = 252/268 (94.03%), Postives = 262/268 (97.76%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             KPI+L DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+++GNIKHAFFQPAEKEMITLLHFHLHNHIMVGN+KTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYKASAFIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 MKPIKLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDILFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNRKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKASAFIVPTSTCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A059AEV5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01613 PE=4 SV=1)

HSP 1 Score: 508.834 bits (1309), Expect = 3.561e-169
Identity = 252/268 (94.03%), Postives = 262/268 (97.76%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             KPI+L DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+++GNIKHAFFQPAEKEMITLLHFHLHNHIMVGN+KTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYKASAFIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 MKPIKLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDILFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNRKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKASAFIVPTSTCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: M5W3N0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000613mg PE=4 SV=1)

HSP 1 Score: 508.064 bits (1307), Expect = 3.757e-169
Identity = 253/268 (94.40%), Postives = 261/268 (97.39%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRKIPGTLE H NGFR+STTR DERVDVM+ NIKHAFFQPAE EMITLLHFHLHNHIMVG KKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYK+SAFIVPTS+CLVEL+ETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPST+LDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  680 FKPIRLSDLWIRPVFGGRGRKIPGTLEAHANGFRFSTTRQDERVDVMFPNIKHAFFQPAENEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKSSAFIVPTSTCLVELIETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTALDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 947

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A059AEB0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01613 PE=4 SV=1)

HSP 1 Score: 508.449 bits (1308), Expect = 5.549e-169
Identity = 252/268 (94.03%), Postives = 262/268 (97.76%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             KPI+L DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+++GNIKHAFFQPAEKEMITLLHFHLHNHIMVGN+KTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYKASAFIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 MKPIKLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDILFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNRKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKASAFIVPTSTCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ASPOR (FACT complex subunit spt16 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=spt16 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.869e-67
Identity = 120/269 (44.61%), Postives = 179/269 (66.54%), Query Frame = 2

Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +P+RLPD+++RP   G+  ++PG +E H NG RY +   +E VDV++ N+KH FFQP   E+I L+H HL   IM+G +KT+DVQFY E  ++     G +R  +     +E E EQ ER R+  ++ +F++F  ++ D  G+ +  G+D+  D P RE+GF GVP +++  I PT+  LV+L E PFLV++L+EIEI +LERV  G KNFD+  VFKDF +  + +++IP  SL+G+K+WLD+ DI + E  LNLNW  I+KT+  DP
Sbjct:  682 RPVRLPDVYLRPPLDGK--RVPGEVEIHQNGLRYMSPFRNEHVDVLFSNVKHLFFQPCAHELIVLIHVHLKTPIMIGKRKTRDVQFYREATEMQFDETGNRRRKHRYGDEEEFEAEQEERRRRAALDREFKAFAEKIADA-GKDE--GVDV--DIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDFHRPPVHVNTIPVESLEGVKDWLDSVDIAFTEGPLNLNWTTIMKTVVSDP 943

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_DICDI (FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 6.610e-67
Identity = 121/264 (45.83%), Postives = 174/264 (65.91%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADER--VDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799
            RLP++  RP   G  R I G LE H NG R++ T   +R  +DV+Y NIKHA +Q A++E + ++HFHLH+ +M+G KKTKDVQFY+E+ ++ Q+L    R     DE EEE+RER  K KIN DF++F+ RV ++  +P      LEFD P RELGF+GVP  ++ FI P+  CL+ ++E PF V++L ++EI   ER     KNFD++ VFKD+ +  +RI  IP    + +KEWLD+ +IK+Y+S  N NW++I+ TI  D
Sbjct:  676 RLPEVHARPTLSGARRTI-GILEAHENGIRFNPTSTKDRTPIDVLYKNIKHAIYQQADQESMAVIHFHLHDALMIGKKKTKDVQFYIEISEMSQSLDVSSR---FNDEEEEERRERALKEKINNDFKTFIKRVEEIAPEP-----GLEFDVPYRELGFYGVPNVSTVFIQPSVHCLLSILEPPFFVLTLDDVEIACFERAIRSLKNFDLSFVFKDYNRPPIRISVIPRNYFETVKEWLDSFNIKFYQSERNYNWKRIMDTIKSD 930

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ASPFU (FACT complex subunit spt16 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spt16 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 7.145e-67
Identity = 120/269 (44.61%), Postives = 179/269 (66.54%), Query Frame = 2

Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +P++LPD+++RP   G+  ++PG +E H NG RY +   +E VDV++ N+KH FFQP   E+I L+H HL   IM+G +KT+DVQFY E  ++     G +R  +     +E E EQ ER R+  ++ +F++F  ++ D  G+ +  G+D+  D P RE+GF GVP +++  I PT+  LV+L E PFLV++L+EIEI +LERV  G KNFD+  VFKDF +  + I++IP  SL+G+K+WLD+ DI + E  LNLNW  I+KT+  DP
Sbjct:  660 RPVKLPDVYLRPPLDGK--RVPGEVEIHQNGLRYMSPFRNEHVDVLFSNVKHLFFQPCAHELIVLIHVHLKTPIMIGKRKTRDVQFYREATEMQFDETGNRRRKHRYGDEEEFEAEQEERRRRAALDREFKAFAEKIADA-GKDE--GVDV--DIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDFHRAPVHINTIPVESLEGVKDWLDSVDIAFTEGPLNLNWTTIMKTVVSDP 921

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CRYNB (FACT complex subunit SPT16 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 8.714e-67
Identity = 124/269 (46.10%), Postives = 170/269 (63.20%), Query Frame = 2

Query:    8 PIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVV-QTLGGGKRSAYXXXXXXXXXXXXXXKNKINMD--FQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            P  L +++ RP  G  G+K  G +E H NG R+       ++D+++ NIKH FFQP+EKE+I ++H HL   IM+G KKT DVQFY EV D+     GG KR A   DE E EQ + DRK +  +D  F  F  R+       QF   +LE D P RELGF+GVP+K+   ++PT++CL+ + E PF V++LSE+EIV+LERV  G KNFDM  V +D KK  + I+SIP   LD +KEWLD+ D+   E  +NL+W  I+KT+ +DP 
Sbjct:  668 PYVLKNVFPRP--GPEGKKTDGNVEIHQNGIRFRPDGPASKIDILFSNIKHLFFQPSEKELIVIIHVHLKAPIMLGKKKTSDVQFYREVADMSFDETGGKKRRARYGDEDEIEQEQEDRKRRAELDKLFHDFARRIETAAQAQQF---ELEVDVPFRELGFNGVPHKSIVALLPTTNCLIHISELPFTVITLSEVEIVHLERVQFGLKNFDMVFVLQDLKKPPVHINSIPVAHLDNVKEWLDSCDVPISEGPVNLSWPAIMKTVNEDPH 931

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CRYNJ (FACT complex subunit SPT16 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 9.818e-67
Identity = 124/269 (46.10%), Postives = 170/269 (63.20%), Query Frame = 2

Query:    8 PIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVV-QTLGGGKRSAYXXXXXXXXXXXXXXKNKINMD--FQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            P  L +++ RP  G  G+K  G +E H NG R+       ++D+++ NIKH FFQP+EKE+I ++H HL   IM+G KKT DVQFY EV D+     GG KR A   DE E EQ + DRK +  +D  F  F  R+       QF   +LE D P RELGF+GVP+K+   ++PT++CL+ + E PF V++LSE+EIV+LERV  G KNFDM  V +D KK  + I+SIP   LD +KEWLD+ D+   E  +NL+W  I+KT+ +DP 
Sbjct:  668 PYVLKNVFPRP--GPEGKKTDGNVEIHQNGIRFRPDGPASKIDILFSNIKHLFFQPSEKELIVIIHVHLKAPIMLGKKKTSDVQFYREVADMSFDETGGKKRRARYGDEDEIEQEQEDRKRRAELDKLFHDFARRIETAAQAQQF---ELEVDVPFRELGFNGVPHKSIVALLPTTNCLIHISELPFTVITLSEVEIVHLERVQFGLKNFDMVFVLQDLKKPPVHINSIPVAHLDNVKEWLDSCDVPISEGPVNLSWPAIMKTVNEDPH 931

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_YARLI (FACT complex subunit SPT16 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 5.570e-66
Identity = 118/271 (43.54%), Postives = 179/271 (66.05%), Query Frame = 2

Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +P++L  +++RP     G+++ GTLE H NG RY S  R+D ++DV++ NIKH FFQP E E+I  +H HL N I++G KKT DVQFY E  D+     G ++  Y     DE+E EQ ER R+ +++ +F++F  ++++   +       ++ D P RELGFHGVP++++  + P++ CLV+L++TPF V++L EIE+ +LERV  G KNFD+  V+KDF + V  I+SIP   LD +K+WL+  +I Y E  +NLNW  I+KT+  DPQ
Sbjct:  658 RPLKLDAVFVRP--APDGKRVAGTLEIHQNGLRYVSPIRSDHKIDVLFDNIKHLFFQPTEGELIVCIHAHLKNPILIGKKKTWDVQFYREASDMAFDETGNRKRKYRYGDEDELEAEQEERRRRLQLDKEFKAFSEKISEASDRK------VDVDTPFRELGFHGVPFRSNVLLQPSADCLVQLIDTPFSVITLGEIELAHLERVQFGLKNFDLVFVYKDFNRPVTHINSIPVDQLDAVKDWLNEVEIPYSEGPVNLNWGSIMKTVVADPQ 920

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_GIBZE (FACT complex subunit SPT16 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.770e-65
Identity = 122/270 (45.19%), Postives = 179/270 (66.30%), Query Frame = 2

Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKK-TKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799
            +P  L +++IRP     G+++PG +E H NG RY S   A  RVDV++ N+KH FFQP + E+I ++H HL + I+VGNKK TKDVQFY E  D+     G ++  Y     DE E EQ ER R+ +++  FQ F  ++ +  G+ +     +E D P+RELGFHGVP++++ F+ PT+ CL+++VE PF+V+++ E+EI +LERV  G KNFDM  VFKDF +    +++IP   LD +K++LD++DI Y E  LNLNW  I+KT+T D
Sbjct:  667 RPAVLDNVYIRPAM--EGKRVPGKVEIHQNGIRYISPLNAQHRVDVLFSNVKHLFFQPCQHELIVIIHIHLKDPIIVGNKKKTKDVQFYREATDIQFDETGNRKRKYRYGDEDEFEAEQEERRRRAELDRLFQGFAQKIAEA-GRNE----GIEVDMPIRELGFHGVPFRSNVFVQPTTDCLIQVVEPPFMVITIEEVEIAHLERVQFGLKNFDMVFVFKDFTRAPYHVNTIPVEFLDQVKDYLDSSDIAYTEGPLNLNWPTIMKTVTAD 929

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_USTMA (FACT complex subunit SPT16 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.042e-64
Identity = 115/266 (43.23%), Postives = 176/266 (66.17%), Query Frame = 2

Query:   17 LPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTT-RADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXX---XXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            LP+++ RP     G+++PG L  H NG R+S+  R D+++D+++ N+KH FFQP +KE+I ++H HL + IM+G +K KD+QFY E  DV     G ++  Y     DEIE EQ ER R++++N +F+ F  R+       + +   +  D P RELGF+GVP++ +  + PT+ CLV L + PFLV++L+++EIV+LERV  G ++FDM  VF DF +  + + SIP+TSLD +K+WLD+ DI   E  +NLNW  I+KT+ +DP
Sbjct:  667 LPEVFPRPAM--EGKRVPGDLTIHQNGLRFSSPLRPDQKIDLLFSNMKHLFFQPCDKELIVIVHIHLKSPIMIGKRKAKDIQFYREASDVQFDETGNRKRKYRSGDEDEIELEQEERRRRSQLNKEFKVFAERI------AEASEGRVSVDVPYRELGFNGVPFRTNVLLQPTTDCLVHLTDPPFLVITLTDVEIVHLERVQFGLQSFDMVFVFSDFSRAPMHVTSIPTTSLDDVKQWLDSVDICVTEGAVNLNWGAIMKTVNEDP 924

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_DROME (FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 5.785e-64
Identity = 120/264 (45.45%), Postives = 171/264 (64.77%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP      +++ G+LE H NGFRY + R D +VD++Y NIK AFFQP + EMI LLHFHL   IM G KK  DVQFY EV ++   LG  +   +D D++  EQ ER+ ++K+   F+SF  +V  +          +EFD P RELGF G P++++  + PTS  LV L E P  V++L ++E+V+ ERV    +NFDM  VFK++ K V  +++IP   LD +KEWL++ DI+Y E   +LNW++I+KTITDDP+
Sbjct:  667 KLKDLYIRPNI--VTKRMTGSLEAHSNGFRYISVRGD-KVDILYNNIKSAFFQPCDGEMIILLHFHLKYAIMFGKKKHVDVQFYTEVGEITTDLGKHQH-MHDRDDLAAEQAERELRHKLKTAFKSFCEKVETMTKSV------VEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFERVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWLNSCDIRYSEGVQSLNWQKIMKTITDDPE 920

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_DEBHA (FACT complex subunit SPT16 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SPT16 PE=3 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.596e-63
Identity = 119/267 (44.57%), Postives = 173/267 (64.79%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +L  ++IRP      +KI G L+ H NG RY S+ R D++VD+++ NIKH FFQ  + E+I ++H HL N IM+G KKT DVQFY E  D+     GG++  Y     DE+++EQ ER RK  ++ +F++F   ++D       +G+ ++ D P RELGF GVP+++S   +PT  CL++L++ P+LVV+L EIEI +LERV  G KNFD+  VFKDF K V+ I++IP   L+ +K WL   DI   E ++NLNW  I+KT+  DP
Sbjct:  683 KLDQVFIRP--QPDTKKIGGVLQIHENGLRYQSSIRMDQKVDILFSNIKHLFFQSCKDELIVIIHCHLKNPIMIGKKKTHDVQFYREASDMAFDETGGRKRRYRYGDEDELQQEQEERRRKALLDKEFKAFAELISD-----SSSGM-VDLDIPFRELGFSGVPFRSSVLCMPTRDCLIQLIDPPYLVVTLEEIEIAHLERVQFGLKNFDLVFVFKDFNKSVVHINTIPMELLEDVKSWLTDVDIPISEGQMNLNWATIMKTVQSDP 941

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NAB2_GOSAR	1.909e-176	98.51	FACT complex subunit SPT16-like protein OS=Gossypi...	[more]
A0A0D2W816_GOSRA	6.212e-176	98.13	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0MRE4_GOSAR	7.168e-176	98.51	FACT complex subunit SPT16-like protein OS=Gossypi...	[more]
A0A0D2TPK9_GOSRA	2.187e-175	98.13	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061F3Y4_THECC	1.069e-174	97.39	Global transcription factor C isoform 1 OS=Theobro...	[more]
W9RSN6_9ROSA	1.300e-169	94.03	FACT complex subunit SPT16 OS=Morus notabilis GN=L...	[more]
A0A059AEK2_EUCGR	1.732e-169	94.03	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A059AEV5_EUCGR	3.561e-169	94.03	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
M5W3N0_PRUPE	3.757e-169	94.40	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A059AEB0_EUCGR	5.549e-169	94.03	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
SPT16_ASPOR	5.869e-67	44.61	FACT complex subunit spt16 OS=Aspergillus oryzae (...	[more]
SPT16_DICDI	6.610e-67	45.83	FACT complex subunit SPT16 OS=Dictyostelium discoi...	[more]
SPT16_ASPFU	7.145e-67	44.61	FACT complex subunit spt16 OS=Neosartorya fumigata...	[more]
SPT16_CRYNB	8.714e-67	46.10	FACT complex subunit SPT16 OS=Cryptococcus neoform...	[more]
SPT16_CRYNJ	9.818e-67	46.10	FACT complex subunit SPT16 OS=Cryptococcus neoform...	[more]
SPT16_YARLI	5.570e-66	43.54	FACT complex subunit SPT16 OS=Yarrowia lipolytica ...	[more]
SPT16_GIBZE	1.770e-65	45.19	FACT complex subunit SPT16 OS=Gibberella zeae (str...	[more]
SPT16_USTMA	3.042e-64	43.23	FACT complex subunit SPT16 OS=Ustilago maydis (str...	[more]
SPT16_DROME	5.785e-64	45.45	FACT complex subunit spt16 OS=Drosophila melanogas...	[more]
SPT16_DEBHA	5.596e-63	44.57	FACT complex subunit SPT16 OS=Debaryomyces hanseni...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013719	Domain of unknown function DUF1747	SMART	SM01287	Rtt106_2	coord: 114..204 e-value: 2.7E-36 score: 136.6
IPR013719	Domain of unknown function DUF1747	PFAM	PF08512	Rtt106	coord: 121..202 e-value: 1.0E-17 score: 64.2
None	No IPR available	PANTHER	PTHR13980	CDC68 RELATED	coord: 1..222

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0011262 ID=g.arboreum_cottongen_reftransV1_0011262; Name=g.arboreum_cottongen_reftransV1_0011262; organism=Gossypium arboreum; type=contig; length=806bp
GTTCAAGCCTATTAGGCTACCTGACCTTTGGATTCGTCCTGTTTTTGGTG
GTCGTGGGAGGAAGATTCCAGGAACACTTGAAACTCATGTTAATGGTTTT
CGATATTCTACTACTAGAGCTGATGAGCGTGTTGATGTTATGTATGGGAA
CATAAAGCATGCATTCTTCCAGCCTGCAGAGAAAGAAATGATCACTCTCC
TTCACTTTCATCTGCACAATCACATAATGGTGGGAAACAAAAAAACTAAA
GATGTGCAATTTTATGTTGAGGTTATGGATGTTGTCCAGACATTGGGAGG
GGGAAAGAGGTCTGCTTATGACCCTGATGAGATTGAAGAAGAGCAAAGGG
AGAGGGATAGGAAGAATAAGATCAACATGGATTTTCAGAGTTTTGTGAAC
CGGGTAAATGATCTATGGGGGCAGCCTCAGTTCAATGGTCTTGATCTTGA
GTTTGATCAACCGCTTAGAGAACTTGGCTTCCATGGGGTCCCCTACAAAG
CCTCCGCTTTTATTGTGCCAACGTCAAGCTGTTTAGTTGAGTTGGTAGAG
ACTCCTTTCCTTGTGGTCTCCTTAAGCGAGATTGAGATCGTGAACCTGGA
GAGGGTTGGCCTTGGGCAGAAAAATTTTGACATGACCATAGTGTTCAAGG
ACTTCAAGAAAGATGTACTAAGGATTGATTCCATCCCTTCAACCTCACTT
GATGGCATCAAGGAATGGCTTGATACAACAGACATAAAGTATTACGAGAG
CAGGCTGAATCTGAACTGGCGGCAGATTCTGAAGACAATCACTGACGATC
CACAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR013719	RTT106/SPT16-like_middle_dom

Search form

g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum

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