g.arboreum_cottongen_reftransV1_0019725, g.arboreum_cottongen_reftransV1_0019725 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: M4EJ88_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra028854 PE=4 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 1.441e-69 Identity = 155/282 (54.96%), Postives = 186/282 (65.96%), Query Frame = 2 Query: 194 MGKKVKWLSSLKKAFNPESKEKK-------NQILDKQVHLGPSSSNAAAPTLET----------VNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988 MGKK KW SS+KKAF+P+SK+ K N ++ SS A P LE +NLSPP T A + + VV+ R +RFAGKS EE A I IQT FR Y+AKRALRA+RGLVRL+ LMEG VKRQ +TL+CMQTLSRVQ QIR RRIRM+EENQA Q+Q+LQKHAKEL L+ G++WDDS+QSKE++EA LLSK+EA MRRERA+AY++THQQ WKN SKS NP+FMD +N T GWSWLERW Sbjct: 1 MGKKAKWFSSVKKAFSPDSKKSKRKSPESPNGVISNPPDQARQSSPPAPPPLEVRVAEVIVERNINLSPP-----------STDAVNATTSDIHVAPSSSAPPEVVVRPRAAAPTRFAGKSNEEAAAILIQTVFRGYLAKRALRAMRGLVRLRLLMEGSVVKRQAANTLKCMQTLSRVQSQIRARRIRMSEENQARQKQLLQKHAKELAGLKNGDNWDDSIQSKEKVEAKLLSKYEATMRRERALAYAYTHQQNWKNNSKSGNPMFMDPSNPTCGWSWLERW 271
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: M0RHV1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 1.932e-69 Identity = 161/273 (58.97%), Postives = 198/273 (72.53%), Query Frame = 2 Query: 194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQVHLG---PSSSNAAAPTLETVNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQR-----RLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988 MGKK KW S++K+ F+PESK KK L K++ G P+ S A + E V PP PE++K+++ E VA VT + RL +++ GK+ EE+A IKIQTAFR ++A+RALRALRGLVRLKSL++G VKRQ T+TLRCMQTL+RVQ QIR RRIRM EENQALQRQ+L KH +EL +L+MGE+WDDSLQSKEQIEASLLSK EAA+RRERA+AY+F+HQQ WK+ SK +NPLFMD NNL WGWSWLERW Sbjct: 1 MGKKGKWFSAVKRVFSPESKAKKEARLKKKLESGTSKPADSLERAAS-EVVPPPPPRHPEEDKVVEIENEQSRHACSAAVAAPAAIEPVVTSSEAAREIIRLKSTTKYPGKTTEEIAAIKIQTAFRGHLARRALRALRGLVRLKSLVDGDTVKRQATTTLRCMQTLARVQSQIRSRRIRMLEENQALQRQMLLKHERELESLKMGEEWDDSLQSKEQIEASLLSKQEAAIRRERALAYAFSHQQ-WKSSSKPVNPLFMDPNNLQWGWSWLERW 271
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: Q93ZH7_ARATH (AT5g03040/F15A17_70 OS=Arabidopsis thaliana GN=iqd2 PE=1 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 6.634e-69 Identity = 158/280 (56.43%), Postives = 202/280 (72.14%), Query Frame = 2 Query: 194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQVHLGPSSSNAAAPTLETV---NLSPPPQ--PEDEKI----------IKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988 MGKK KW SS+KKAF+P+SK+ K ++ + Q + SN P ++ V + SPPP P + ++ + P + A+A + P VP+ +A VV+R +RFAGKS EE A I IQT FR Y+A+RALRA+RGLVRLK LMEG VKRQ +TL+CMQTLSRVQ QIR RRIRM+EENQA Q+Q+LQKHAKEL L+ G++W+DS+QSKE++EA+LLSK+EA MRRERA+AYS++HQQ WKN SKS NP+FMD +N TWGWSWLERW Sbjct: 1 MGKKAKWFSSVKKAFSPDSKKSKQKLAEGQNGV---ISNP--PVVDNVRQSSSSPPPALAPREVRVAEVIVERNRDLSPPSTADAVNVTATDVPVVPSSSAPGVVRRA--TPTRFAGKSNEEAAAILIQTIFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANTLKCMQTLSRVQSQIRARRIRMSEENQARQKQLLQKHAKELAGLKNGDNWNDSIQSKEKVEANLLSKYEATMRRERALAYSYSHQQNWKNNSKSGNPMFMDPSNPTWGWSWLERW 273
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: A0A0D3AHJ4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 2.582e-68 Identity = 154/278 (55.40%), Postives = 189/278 (67.99%), Query Frame = 2 Query: 194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQVHLGPSSSNAAAPTLETVNL---SPPP---------QPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQR-RLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988 MGKK KW SS+KKAF+P+SK+ K + + + SN P L + SPPP ++ + P T A + + A VV R R +RFAGKS EE A I IQT FR Y+AKRA+RA+RGLVRL+ LMEG VKRQ +TL+CMQTLSRVQ QIR RRIRM+EENQA Q+Q+LQKHAKEL L+ G++WDDS+QSKE++EA LLSK+EA MRRERA+AY++THQQ WKN SKS NP+FMD +N TWGWSWLERW Sbjct: 1 MGKKAKWFSSVKKAFSPDSKKSKRKSPESSNGV---VSNPPPPPLADHHARQSSPPPLEVRVAEVIVEQNINLSAPSTDAVNATTSDIPVAPSSSAAPPEVVVRPRAAAPTRFAGKSNEEAAAILIQTVFRGYLAKRAIRAMRGLVRLRLLMEGSVVKRQAANTLKCMQTLSRVQSQIRARRIRMSEENQARQKQLLQKHAKELAGLKNGDNWDDSIQSKEKVEAKLLSKYEATMRRERALAYAYTHQQNWKNNSKSGNPMFMDPSNPTWGWSWLERW 275
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: F6HQZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g02360 PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 2.872e-68 Identity = 154/273 (56.41%), Postives = 189/273 (69.23%), Query Frame = 2 Query: 194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQV------HLGPSSSNAAAPTLETVNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDS--RFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988 MG+K WLSS+KKA +PE KEKK+Q DK H P + ++ T+ +L+PP E+ K I+P+ V + + + I + + GK+ EE A IKIQTAFR Y+A+RALRALRGLVRL+SL++G AVKRQ +TLRCMQTL+RVQ QI RRIRM+EENQALQRQ+LQK AKE L+MGE+WDDSLQSKEQIEA LL+K AAMRRERA+AY+F+HQQ WKN SKS N LFMD +N WGWSWLERW Sbjct: 1 MGRKGNWLSSVKKALSPEPKEKKDQRADKSKKKWFGKHKYPDPNPSSLETVPGPSLAPP---EEVKTIEPDNEHHKHVYSVAATTTMASLDVPETDVEVVEITTLTQSTGKAKEEAAAIKIQTAFRGYLARRALRALRGLVRLQSLIQGTAVKRQAANTLRCMQTLARVQSQICYRRIRMSEENQALQRQLLQKQAKEFEQLKMGEEWDDSLQSKEQIEAGLLNKQGAAMRRERALAYAFSHQQAWKNSSKSTNLLFMDPSNPHWGWSWLERW 270
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy Swiss-Prot
Match: IQD1_ARATH (Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 1.287e-57 Identity = 138/274 (50.36%), Postives = 182/274 (66.42%), Query Frame = 2 Query: 194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQ--VHLGP---SSSNAAAPTLET----VNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988 M KK KWL ++KKAF+P+SK+ K++ ++ Q V P ++S +++P E VN E +K + P + T V P + +V Q + +RFAGKS EE A I IQ+ FR ++A+R + +RG RLK LMEG V+RQ TL+CMQTLSRVQ QIR RRIRM+EENQA +Q+LQKHAKEL L+ G +W+ S QSKEQ+EA +L K+EA MRRERA+AY+FTHQQ K+ SK+ NP+FMD +N TWGWSWLERW Sbjct: 1 MVKKAKWLKNVKKAFSPDSKKLKHESVECQDSVISYPVLIATSRSSSPQFEVRVDEVNY------EQKKNLYPPSSDSVTATVAHVLVDSPPSSPESVHQ--AIVVNRFAGKSKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRSRRIRMSEENQARHKQLLQKHAKELGGLKNGGNWNYSNQSKEQVEAGMLHKYEATMRRERALAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERW 266
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy Swiss-Prot
Match: IQD14_ARATH (Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.745e-12 Identity = 63/160 (39.38%), Postives = 103/160 (64.38%), Query Frame = 2 Query: 506 MEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLER 985 ++ + KIQ AFR YMA+++ RAL+GLVRL+ ++ G +VKRQ + ++ MQ + RVQ QI+ RRI+M ENQA Q+ + AK + ++WDDS+ +KE+ ++ K +A ++RER+MAY+++ ++ WKN KS D + W+W++R Sbjct: 320 VQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSRRIKML-ENQA---QVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAIIKRERSMAYAYS-RKLWKNSPKST----QDNRSFPQWWNWVDR 470 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 2
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019725 ID=g.arboreum_cottongen_reftransV1_0019725; Name=g.arboreum_cottongen_reftransV1_0019725; organism=Gossypium arboreum; type=contig; length=988bpback to top |