g.arboreum_cottongen_reftransV1_0019725, g.arboreum_cottongen_reftransV1_0019725 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019725
Unique Nameg.arboreum_cottongen_reftransV1_0019725
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length988
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0019725:1..988 .
Chr2:69083853..69086356 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: M4EJ88_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra028854 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.441e-69
Identity = 155/282 (54.96%), Postives = 186/282 (65.96%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKK-------NQILDKQVHLGPSSSNAAAPTLET----------VNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MGKK KW SS+KKAF+P+SK+ K       N ++         SS  A P LE           +NLSPP            T A       +      +     VV+ R    +RFAGKS EE A I IQT FR Y+AKRALRA+RGLVRL+ LMEG  VKRQ  +TL+CMQTLSRVQ QIR RRIRM+EENQA Q+Q+LQKHAKEL  L+ G++WDDS+QSKE++EA LLSK+EA MRRERA+AY++THQQ WKN SKS NP+FMD +N T GWSWLERW
Sbjct:    1 MGKKAKWFSSVKKAFSPDSKKSKRKSPESPNGVISNPPDQARQSSPPAPPPLEVRVAEVIVERNINLSPP-----------STDAVNATTSDIHVAPSSSAPPEVVVRPRAAAPTRFAGKSNEEAAAILIQTVFRGYLAKRALRAMRGLVRLRLLMEGSVVKRQAANTLKCMQTLSRVQSQIRARRIRMSEENQARQKQLLQKHAKELAGLKNGDNWDDSIQSKEKVEAKLLSKYEATMRRERALAYAYTHQQNWKNNSKSGNPMFMDPSNPTCGWSWLERW 271          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: M0RHV1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.932e-69
Identity = 161/273 (58.97%), Postives = 198/273 (72.53%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQVHLG---PSSSNAAAPTLETVNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQR-----RLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MGKK KW S++K+ F+PESK KK   L K++  G   P+ S   A + E V   PP  PE++K+++ E           VA        VT  +      RL   +++ GK+ EE+A IKIQTAFR ++A+RALRALRGLVRLKSL++G  VKRQ T+TLRCMQTL+RVQ QIR RRIRM EENQALQRQ+L KH +EL +L+MGE+WDDSLQSKEQIEASLLSK EAA+RRERA+AY+F+HQQ WK+ SK +NPLFMD NNL WGWSWLERW
Sbjct:    1 MGKKGKWFSAVKRVFSPESKAKKEARLKKKLESGTSKPADSLERAAS-EVVPPPPPRHPEEDKVVEIENEQSRHACSAAVAAPAAIEPVVTSSEAAREIIRLKSTTKYPGKTTEEIAAIKIQTAFRGHLARRALRALRGLVRLKSLVDGDTVKRQATTTLRCMQTLARVQSQIRSRRIRMLEENQALQRQMLLKHERELESLKMGEEWDDSLQSKEQIEASLLSKQEAAIRRERALAYAFSHQQ-WKSSSKPVNPLFMDPNNLQWGWSWLERW 271          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: Q93ZH7_ARATH (AT5g03040/F15A17_70 OS=Arabidopsis thaliana GN=iqd2 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.634e-69
Identity = 158/280 (56.43%), Postives = 202/280 (72.14%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQVHLGPSSSNAAAPTLETV---NLSPPPQ--PEDEKI----------IKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MGKK KW SS+KKAF+P+SK+ K ++ + Q  +    SN   P ++ V   + SPPP   P + ++          + P + A+A +      P VP+ +A  VV+R     +RFAGKS EE A I IQT FR Y+A+RALRA+RGLVRLK LMEG  VKRQ  +TL+CMQTLSRVQ QIR RRIRM+EENQA Q+Q+LQKHAKEL  L+ G++W+DS+QSKE++EA+LLSK+EA MRRERA+AYS++HQQ WKN SKS NP+FMD +N TWGWSWLERW
Sbjct:    1 MGKKAKWFSSVKKAFSPDSKKSKQKLAEGQNGV---ISNP--PVVDNVRQSSSSPPPALAPREVRVAEVIVERNRDLSPPSTADAVNVTATDVPVVPSSSAPGVVRRA--TPTRFAGKSNEEAAAILIQTIFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANTLKCMQTLSRVQSQIRARRIRMSEENQARQKQLLQKHAKELAGLKNGDNWNDSIQSKEKVEANLLSKYEATMRRERALAYSYSHQQNWKNNSKSGNPMFMDPSNPTWGWSWLERW 273          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: A0A0D3AHJ4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.582e-68
Identity = 154/278 (55.40%), Postives = 189/278 (67.99%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQVHLGPSSSNAAAPTLETVNL---SPPP---------QPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQR-RLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MGKK KW SS+KKAF+P+SK+ K +  +    +    SN   P L   +    SPPP           ++  +  P T A       +      + A   VV R R    +RFAGKS EE A I IQT FR Y+AKRA+RA+RGLVRL+ LMEG  VKRQ  +TL+CMQTLSRVQ QIR RRIRM+EENQA Q+Q+LQKHAKEL  L+ G++WDDS+QSKE++EA LLSK+EA MRRERA+AY++THQQ WKN SKS NP+FMD +N TWGWSWLERW
Sbjct:    1 MGKKAKWFSSVKKAFSPDSKKSKRKSPESSNGV---VSNPPPPPLADHHARQSSPPPLEVRVAEVIVEQNINLSAPSTDAVNATTSDIPVAPSSSAAPPEVVVRPRAAAPTRFAGKSNEEAAAILIQTVFRGYLAKRAIRAMRGLVRLRLLMEGSVVKRQAANTLKCMQTLSRVQSQIRARRIRMSEENQARQKQLLQKHAKELAGLKNGDNWDDSIQSKEKVEAKLLSKYEATMRRERALAYAYTHQQNWKNNSKSGNPMFMDPSNPTWGWSWLERW 275          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: F6HQZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g02360 PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.872e-68
Identity = 154/273 (56.41%), Postives = 189/273 (69.23%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQV------HLGPSSSNAAAPTLETVNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDS--RFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MG+K  WLSS+KKA +PE KEKK+Q  DK        H  P  + ++  T+   +L+PP   E+ K I+P+         V     + +          + I +  +  GK+ EE A IKIQTAFR Y+A+RALRALRGLVRL+SL++G AVKRQ  +TLRCMQTL+RVQ QI  RRIRM+EENQALQRQ+LQK AKE   L+MGE+WDDSLQSKEQIEA LL+K  AAMRRERA+AY+F+HQQ WKN SKS N LFMD +N  WGWSWLERW
Sbjct:    1 MGRKGNWLSSVKKALSPEPKEKKDQRADKSKKKWFGKHKYPDPNPSSLETVPGPSLAPP---EEVKTIEPDNEHHKHVYSVAATTTMASLDVPETDVEVVEITTLTQSTGKAKEEAAAIKIQTAFRGYLARRALRALRGLVRLQSLIQGTAVKRQAANTLRCMQTLARVQSQICYRRIRMSEENQALQRQLLQKQAKEFEQLKMGEEWDDSLQSKEQIEAGLLNKQGAAMRRERALAYAFSHQQAWKNSSKSTNLLFMDPSNPHWGWSWLERW 270          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy Swiss-Prot
Match: IQD1_ARATH (Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.287e-57
Identity = 138/274 (50.36%), Postives = 182/274 (66.42%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQ--VHLGP---SSSNAAAPTLET----VNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            M KK KWL ++KKAF+P+SK+ K++ ++ Q  V   P   ++S +++P  E     VN       E +K + P +    T     V    P  +  +V Q    + +RFAGKS EE A I IQ+ FR ++A+R  + +RG  RLK LMEG  V+RQ   TL+CMQTLSRVQ QIR RRIRM+EENQA  +Q+LQKHAKEL  L+ G +W+ S QSKEQ+EA +L K+EA MRRERA+AY+FTHQQ  K+ SK+ NP+FMD +N TWGWSWLERW
Sbjct:    1 MVKKAKWLKNVKKAFSPDSKKLKHESVECQDSVISYPVLIATSRSSSPQFEVRVDEVNY------EQKKNLYPPSSDSVTATVAHVLVDSPPSSPESVHQ--AIVVNRFAGKSKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRSRRIRMSEENQARHKQLLQKHAKELGGLKNGGNWNYSNQSKEQVEAGMLHKYEATMRRERALAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERW 266          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy Swiss-Prot
Match: IQD14_ARATH (Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.745e-12
Identity = 63/160 (39.38%), Postives = 103/160 (64.38%), Query Frame = 2
Query:  506 MEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLER 985
            ++  +  KIQ AFR YMA+++ RAL+GLVRL+ ++ G +VKRQ  + ++ MQ + RVQ QI+ RRI+M  ENQA   Q+ +  AK   +    ++WDDS+ +KE+ ++    K +A ++RER+MAY+++ ++ WKN  KS      D  +    W+W++R
Sbjct:  320 VQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSRRIKML-ENQA---QVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAIIKRERSMAYAYS-RKLWKNSPKST----QDNRSFPQWWNWVDR 470          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M4EJ88_BRARP1.441e-6954.96Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
M0RHV1_MUSAM1.932e-6958.97Uncharacterized protein OS=Musa acuminata subsp. m... [more]
Q93ZH7_ARATH6.634e-6956.43AT5g03040/F15A17_70 OS=Arabidopsis thaliana GN=iqd... [more]
A0A0D3AHJ4_BRAOL2.582e-6855.40Uncharacterized protein OS=Brassica oleracea var. ... [more]
F6HQZ6_VITVI2.872e-6856.41Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IQD1_ARATH1.287e-5750.36Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD... [more]
IQD14_ARATH1.745e-1239.38Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQ... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019725 ID=g.arboreum_cottongen_reftransV1_0019725; Name=g.arboreum_cottongen_reftransV1_0019725; organism=Gossypium arboreum; type=contig; length=988bp
GGGGGTTTCACTTAAAAACAGCTGTTTCTTCTTCAATTTGTCTGAAAAAC
ATAAACTTTCCTTCTTCTCAAGATCTGTTTTTGTTCTTTCTCTGTAACTG
TTTACCGACACACACACAAAAAAAAAGTTCGTTCTTCCGAATTTCTTGAG
ATCTGGGCATTATTGTTTCAGGATCATATCGAGGAAAGAAAAGATGGGGA
AGAAAGTAAAATGGCTATCTTCTTTAAAGAAAGCCTTCAATCCAGAGTCA
AAGGAAAAGAAAAATCAGATTTTGGATAAGCAAGTGCATTTGGGTCCTAG
TAGTTCTAATGCAGCTGCACCCACATTAGAAACTGTTAATTTGTCCCCTC
CACCTCAGCCGGAAGATGAGAAAATAATCAAACCCGAGACGGTTGCTGAA
GCTACCGATGATGATGTTGTTGTTGCTCCAGCTGTTCCGACCCCGGCTGC
TGTTACGGTCGTTCAACGCCGACTTAATATAGACTCTCGGTTCGCTGGAA
AATCTATGGAGGAAGTTGCAGTGATCAAAATTCAGACAGCTTTTCGAGTT
TACATGGCGAAAAGAGCATTGCGTGCTTTACGAGGACTTGTGAGGCTGAA
ATCGTTAATGGAAGGACCTGCGGTGAAACGGCAAGTGACGAGTACCCTTC
GTTGTATGCAAACACTTTCTCGTGTGCAGTGTCAGATTCGGATGAGGAGA
ATCCGTATGACCGAAGAAAATCAAGCTCTTCAGAGACAAATCTTGCAGAA
ACATGCGAAAGAGCTTGTGAATTTGCAGATGGGGGAAGATTGGGACGATA
GCTTGCAATCGAAGGAACAAATCGAAGCGAGCTTATTGAGCAAACACGAG
GCTGCAATGAGACGAGAAAGGGCAATGGCTTATTCATTTACTCATCAGCA
AACTTGGAAGAACGGTTCGAAATCTATGAATCCGTTATTCATGGATATGA
ACAACCTGACGTGGGGTTGGAGTTGGTTAGAACGATGG
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