g.arboreum_cottongen_reftransV1_0019725, g.arboreum_cottongen_reftransV1_0019725 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019725
Unique Nameg.arboreum_cottongen_reftransV1_0019725
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length988
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr2chromosomeg.arboreum_cottongen_reftransV1_0019725:1..988 .
Chr2:69083853..69086356 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: A0A0B0NE58_GOSAR (Protein IQ-DOMAIN 1-like protein OS=Gossypium arboreum GN=F383_18915 PE=4 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.317e-81
Identity = 168/249 (67.47%), Postives = 191/249 (76.71%), Query Frame = 2
Query:  245 ESKEKKNQILDKQVHLGPSSSNAAAPTLETVNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRR--LNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLER 985
            E  E K   L+K+VHL P+ S+AA        LSP PQPE+ K+I+PE         V VA +   PA V +   R  LN D+RFAGKS EEVA IKIQ AFR Y+AKRALRALRGL RLKSLMEG A +RQ + +LRCMQTLSR+QCQI  RR RM EENQALQRQ+LQK AKE+VNLQMGEDWDDS++SKEQIEASLLSKHEAAMRRER MAYSFTHQQTWKN S+SMNPLFMD +N +WGWSW+ER
Sbjct:   17 EKPEIKRTFLEKKVHLDPTGSDAA-------KLSPLPQPEEVKLIEPEVEQSKQTYPVAVANSAAVPALVALQAIRHQLNTDARFAGKSKEEVAAIKIQAAFRAYLAKRALRALRGLARLKSLMEGIAARRQASGSLRCMQTLSRMQCQIHARRTRMMEENQALQRQLLQKLAKEIVNLQMGEDWDDSVRSKEQIEASLLSKHEAAMRRERTMAYSFTHQQTWKNASRSMNPLFMDPSNPSWGWSWMER 258          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: B9IJ09_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08760g PE=4 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 6.922e-75
Identity = 164/271 (60.52%), Postives = 198/271 (73.06%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQVHLGPSSSNAAAPTLETVN-LSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNID-----SRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MG+K KW SS+KKA +P+ KEK     D++   G    ++ + +LE V  LSPPPQPE+ K+I+           V VA A     A T VQ  + +      +++AGKS EE A IKIQT FR YMA+RALRALRGL RLK LMEGP +KRQ T TLRCMQTL+RVQ QI  RRIRM+EENQALQRQ+LQKHAKEL NL++GE+WDDSLQSKEQIEASLL+K EAA RRERA+AY+F+HQQT KN S+S NP+FM+  N +WGWSWLERW
Sbjct:    1 MGRKGKWFSSVKKALSPDPKEK----TDQKKWFGKQQLDSDSTSLENVTMLSPPPQPEEVKLIETTDEVNQHTFPVPVATAAVPEPAPTTVQTNIEVVQLTKVNKYAGKSKEEEAAIKIQTTFRGYMARRALRALRGLARLKFLMEGPRIKRQATHTLRCMQTLARVQSQIHTRRIRMSEENQALQRQLLQKHAKELENLRIGEEWDDSLQSKEQIEASLLNKFEAATRRERALAYAFSHQQTLKNSSRSANPMFMN-GNPSWGWSWLERW 266          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: U5GAE4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s13330g PE=4 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 9.324e-73
Identity = 158/274 (57.66%), Postives = 196/274 (71.53%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQVH--LGPSSSNAAAPTLETVNL--SPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNI-----DSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MG+K KW SS+KKA +P+ KEKK+Q  +K      G    ++ + +LE V +   PPPQP++ K+I+           V V  A     A   VQ    +      +++AGKS EEVA IKIQTAFR YMA+RALRALRGL RLKSLMEGP +KRQ T TL CMQTL+RVQ QI  RRIRM+EENQALQRQ+L +HAKE  +LQ+GE+WDDSLQSKEQIEA+LL+K EAA+RRERA+AYSF+HQQ WK  S+++NP+FM   N +WGWSWLERW
Sbjct:    1 MGRKGKWFSSVKKALSPDYKEKKDQKSNKSKKKWFGKQQLDSDSTSLENVTMRSPPPPQPDEVKLIETTNEENQHTYSVPVVTAAVAEHAPITVQTTTEVFQPTKVNKYAGKSKEEVAAIKIQTAFRGYMARRALRALRGLFRLKSLMEGPTIKRQATHTLHCMQTLARVQSQIHTRRIRMSEENQALQRQLLHEHAKEFESLQIGEEWDDSLQSKEQIEANLLNKFEAAVRRERALAYSFSHQQAWKISSRAVNPMFMS-GNPSWGWSWLERW 273          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: A0A078EUG0_BRANA (BnaAnng00580D protein OS=Brassica napus GN=BnaAnng00580D PE=4 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 4.410e-71
Identity = 156/282 (55.32%), Postives = 186/282 (65.96%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKK-------NQILDKQVHLGPSSSNAAAPTLET----------VNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MGKK KW SS+KKAF+P+SK+ K       N ++         SS  A P LE           +NLSPP            T A       +      +     VV+ R     RFAGKS EE A I IQT FR Y+AKRALRA+RGLVRL+ LMEG  VKRQ  +TL+CMQTLSRVQ QIR RRIRM+EENQA Q+Q+LQKHAKEL  L+ G++WDDS+QSKE++EA LLSK+EA MRRERA+AY++THQQ WKN SKS NP+FMD +N TWGWSWLERW
Sbjct:    1 MGKKAKWFSSVKKAFSPDSKKSKRKSPESPNGVISNPPDQARQSSPPAPPPLEVRVAEVIVERNINLSPP-----------STDAVNATTSDIHVAPSSSAPPEVVVRPRAAAPPRFAGKSNEEAAAILIQTVFRGYLAKRALRAMRGLVRLRLLMEGSVVKRQAANTLKCMQTLSRVQSQIRARRIRMSEENQARQKQLLQKHAKELAGLKNGDNWDDSIQSKEKVEAKLLSKYEATMRRERALAYAYTHQQNWKNNSKSGNPMFMDPSNPTWGWSWLERW 271          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: A0A067EWH7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011955mg PE=4 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.226e-70
Identity = 135/173 (78.03%), Postives = 153/173 (88.44%), Query Frame = 2
Query:  470 RLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            R+  ++RFAGKS EE A I+IQTAFR Y+A+RALRALRGLVRLK LMEGP VKRQ  +TLRCMQTLSR+Q QIR RR+RM+EENQALQRQ+LQKHAKEL  +QMGE+WDDS+QSKEQ+EA+LLSK+EA MRRERAMAYSFTHQQTWKN SKS NP+FMD  N TWGWSWLERW
Sbjct:   14 RIVTNTRFAGKSKEEAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMSEENQALQRQLLQKHAKELA-MQMGEEWDDSIQSKEQVEANLLSKYEATMRRERAMAYSFTHQQTWKNSSKSSNPMFMDPRNPTWGWSWLERW 185          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: A0A078J186_BRANA (BnaC02g03410D protein OS=Brassica napus GN=BnaC02g03410D PE=4 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.437e-70
Identity = 154/271 (56.83%), Postives = 187/271 (69.00%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQVHLGPSSSNAAAPTLET--VNLSPPPQPED----EKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MGKK KW SS+KKAF+P+SK+ K +  +    +    SN   P L       S PP P +    E I++      A   D V A     P   +    R    +RFAGKS EE A I IQT FR Y+AKRA+RA+RGLVRL+ LMEG  VKRQ  +TL+CMQTLSRVQ QIR RRIRM+EENQA Q+Q+LQKHAKEL  L+ G++WDDS+QSKE++EA LLSK+EA MRRERA+AY++THQQ WKN SKS NP+FMD +N TWGWSWLERW
Sbjct:    1 MGKKAKWFSSVKKAFSPDSKKSKRKSPESSNGV---VSNPPPPPLADHHARQSSPPAPLEVRVAEVIVEQNINLSAPSTDAVNATTSDIPVVPSSSAPRAAAPTRFAGKSNEEAAAILIQTVFRGYLAKRAIRAMRGLVRLRLLMEGSVVKRQAANTLKCMQTLSRVQSQIRARRIRMSEENQARQKQLLQKHAKELAGLKNGDNWDDSIQSKEKVEAKLLSKYEATMRRERALAYAYTHQQNWKNNSKSGNPMFMDPSNPTWGWSWLERW 268          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: M5WHS2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005071mg PE=4 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.149e-70
Identity = 159/280 (56.79%), Postives = 192/280 (68.57%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDK------QVHLGPSSSNAAAPTLETVNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXX---------XXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MG+K  W SS+KKA +P+SKEKK Q  DK           P S +    + +   L P PQPE+ K+   E         V V                        RL  ++++AGKS EEVA IKIQTAFR Y+A+RALRALRGLVRLK L+EG  VKRQ T+TLRCMQTLSRVQ QIR RRIRM EENQALQRQ+L KHAKEL  L++G++WDDS+QSKEQ+EA+LLSKHEAAMRRERA+AY+F+HQ+  KN +KS+NP+FMD +N TWGWSWLERW
Sbjct:    1 MGRKGNWFSSVKKALSPKSKEKKEQNSDKLKEKWSGKQKYPESEST---SFQPATLPPLPQPEEVKLTNVENEQNNDAYSVAVTTTTAVAEPAVYVAPATQAVAQVVRLPTNTQYAGKSREEVAAIKIQTAFRGYLARRALRALRGLVRLKLLIEGSVVKRQATNTLRCMQTLSRVQSQIRSRRIRMLEENQALQRQLLLKHAKELETLRLGDEWDDSIQSKEQVEANLLSKHEAAMRRERALAYAFSHQKNGKNSTKSVNPMFMDPSNPTWGWSWLERW 277          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: A0A078FGQ3_BRANA (BnaA03g00740D protein OS=Brassica napus GN=BnaA03g00740D PE=4 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 9.795e-70
Identity = 160/290 (55.17%), Postives = 190/290 (65.52%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQVHLGPSSSNAAAPTLETVNLSPPPQPED------------------EKIIK-------PXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            MGKK KW SS+KKAF+P SK K         H  P S N        V  +PPPQP++                  E I++       P T A       V A  VP+ +A   V RR    +RF GKS EE A I IQT FR Y+A+RALRA+RGLVRLK LMEG  VKRQ  +TL+CMQTLSRVQ QIR RRIRM+EENQA Q+Q+LQKHAKEL  L+ G +WDDS+QSKE++EA LLSK+EA MRRERA+AY+++HQQ WKN SKS NP+FMD +N TWGWSWLERW
Sbjct:    1 MGKKAKWFSSVKKAFSPNSKSK---------HKSPESPNG-------VVSNPPPQPDNARQPSLPPPPPPLEVRVAEVIVEQNKNLSPPSTNAVNASTTDVPAVVVPSSSAPPEVVRRRATATRFPGKSNEEAAAILIQTVFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANTLKCMQTLSRVQSQIRARRIRMSEENQARQKQLLQKHAKELAGLKNGGNWDDSIQSKEKVEAKLLSKYEATMRRERALAYAYSHQQNWKNNSKSGNPMFMDPSNPTWGWSWLERW 274          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: V4SN34_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011643mg PE=4 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.369e-69
Identity = 135/173 (78.03%), Postives = 153/173 (88.44%), Query Frame = 2
Query:  470 RLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            R+  ++RFAGKS EE A I+IQTAFR Y+A+RALRALRGLVRLK LMEGP VKRQ  +TLRCMQTLSR+Q QIR RR+RM+EENQALQRQ+LQKHAKEL  +QMGE+WDDS+QSKEQ+EA+LLSK+EA MRRERAMAYSFTHQQTWKN SKS NP+FMD  N TWGWSWLERW
Sbjct:  101 RIVTNTRFAGKSKEEAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMSEENQALQRQLLQKHAKELA-MQMGEEWDDSIQSKEQVEANLLSKYEATMRRERAMAYSFTHQQTWKNSSKSSNPMFMDPRNPTWGWSWLERW 272          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Match: A0A067EN36_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011955mg PE=4 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.402e-69
Identity = 135/173 (78.03%), Postives = 153/173 (88.44%), Query Frame = 2
Query:  470 RLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            R+  ++RFAGKS EE A I+IQTAFR Y+A+RALRALRGLVRLK LMEGP VKRQ  +TLRCMQTLSR+Q QIR RR+RM+EENQALQRQ+LQKHAKEL  +QMGE+WDDS+QSKEQ+EA+LLSK+EA MRRERAMAYSFTHQQTWKN SKS NP+FMD  N TWGWSWLERW
Sbjct:  102 RIVTNTRFAGKSKEEAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMSEENQALQRQLLQKHAKELA-MQMGEEWDDSIQSKEQVEANLLSKYEATMRRERAMAYSFTHQQTWKNSSKSSNPMFMDPRNPTWGWSWLERW 273          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy Swiss-Prot
Match: IQD1_ARATH (Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.287e-57
Identity = 138/274 (50.36%), Postives = 182/274 (66.42%), Query Frame = 2
Query:  194 MGKKVKWLSSLKKAFNPESKEKKNQILDKQ--VHLGP---SSSNAAAPTLET----VNLSPPPQPEDEKIIKPXXXXXXXXXXXXXXXXXXXXXXXXXXQRRLNIDSRFAGKSMEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLERW 988
            M KK KWL ++KKAF+P+SK+ K++ ++ Q  V   P   ++S +++P  E     VN       E +K + P +    T     V    P  +  +V Q    + +RFAGKS EE A I IQ+ FR ++A+R  + +RG  RLK LMEG  V+RQ   TL+CMQTLSRVQ QIR RRIRM+EENQA  +Q+LQKHAKEL  L+ G +W+ S QSKEQ+EA +L K+EA MRRERA+AY+FTHQQ  K+ SK+ NP+FMD +N TWGWSWLERW
Sbjct:    1 MVKKAKWLKNVKKAFSPDSKKLKHESVECQDSVISYPVLIATSRSSSPQFEVRVDEVNY------EQKKNLYPPSSDSVTATVAHVLVDSPPSSPESVHQ--AIVVNRFAGKSKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRSRRIRMSEENQARHKQLLQKHAKELGGLKNGGNWNYSNQSKEQVEAGMLHKYEATMRRERALAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERW 266          
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy Swiss-Prot
Match: IQD14_ARATH (Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.745e-12
Identity = 63/160 (39.38%), Postives = 103/160 (64.38%), Query Frame = 2
Query:  506 MEEVAVIKIQTAFRVYMXXXXXXXXXXXXXXKSLMEGPAVKRQVTSTLRCMQTLSRVQCQIRMRRIRMTEENQALQRQILQKHAKELVNLQMGEDWDDSLQSKEQIEASLLSKHXXXXXXXXXXXYSFTHQQTWKNGSKSMNPLFMDMNNLTWGWSWLER 985
            ++  +  KIQ AFR YMA+++ RAL+GLVRL+ ++ G +VKRQ  + ++ MQ + RVQ QI+ RRI+M  ENQA   Q+ +  AK   +    ++WDDS+ +KE+ ++    K +A ++RER+MAY+++ ++ WKN  KS      D  +    W+W++R
Sbjct:  320 VQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSRRIKML-ENQA---QVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAIIKRERSMAYAYS-RKLWKNSPKST----QDNRSFPQWWNWVDR 470          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NE58_GOSAR1.317e-8167.47Protein IQ-DOMAIN 1-like protein OS=Gossypium arbo... [more]
B9IJ09_POPTR6.922e-7560.52Uncharacterized protein OS=Populus trichocarpa GN=... [more]
U5GAE4_POPTR9.324e-7357.66Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A078EUG0_BRANA4.410e-7155.32BnaAnng00580D protein OS=Brassica napus GN=BnaAnng... [more]
A0A067EWH7_CITSI1.226e-7078.03Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A078J186_BRANA1.437e-7056.83BnaC02g03410D protein OS=Brassica napus GN=BnaC02g... [more]
M5WHS2_PRUPE2.149e-7056.79Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A078FGQ3_BRANA9.795e-7055.17BnaA03g00740D protein OS=Brassica napus GN=BnaA03g... [more]
V4SN34_9ROSI1.369e-6978.03Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067EN36_CITSI1.402e-6978.03Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0019725 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IQD1_ARATH1.287e-5750.36Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD... [more]
IQD14_ARATH1.745e-1239.38Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQ... [more]
back to top
Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019725 ID=g.arboreum_cottongen_reftransV1_0019725; Name=g.arboreum_cottongen_reftransV1_0019725; organism=Gossypium arboreum; type=contig; length=988bp
GGGGGTTTCACTTAAAAACAGCTGTTTCTTCTTCAATTTGTCTGAAAAAC
ATAAACTTTCCTTCTTCTCAAGATCTGTTTTTGTTCTTTCTCTGTAACTG
TTTACCGACACACACACAAAAAAAAAGTTCGTTCTTCCGAATTTCTTGAG
ATCTGGGCATTATTGTTTCAGGATCATATCGAGGAAAGAAAAGATGGGGA
AGAAAGTAAAATGGCTATCTTCTTTAAAGAAAGCCTTCAATCCAGAGTCA
AAGGAAAAGAAAAATCAGATTTTGGATAAGCAAGTGCATTTGGGTCCTAG
TAGTTCTAATGCAGCTGCACCCACATTAGAAACTGTTAATTTGTCCCCTC
CACCTCAGCCGGAAGATGAGAAAATAATCAAACCCGAGACGGTTGCTGAA
GCTACCGATGATGATGTTGTTGTTGCTCCAGCTGTTCCGACCCCGGCTGC
TGTTACGGTCGTTCAACGCCGACTTAATATAGACTCTCGGTTCGCTGGAA
AATCTATGGAGGAAGTTGCAGTGATCAAAATTCAGACAGCTTTTCGAGTT
TACATGGCGAAAAGAGCATTGCGTGCTTTACGAGGACTTGTGAGGCTGAA
ATCGTTAATGGAAGGACCTGCGGTGAAACGGCAAGTGACGAGTACCCTTC
GTTGTATGCAAACACTTTCTCGTGTGCAGTGTCAGATTCGGATGAGGAGA
ATCCGTATGACCGAAGAAAATCAAGCTCTTCAGAGACAAATCTTGCAGAA
ACATGCGAAAGAGCTTGTGAATTTGCAGATGGGGGAAGATTGGGACGATA
GCTTGCAATCGAAGGAACAAATCGAAGCGAGCTTATTGAGCAAACACGAG
GCTGCAATGAGACGAGAAAGGGCAATGGCTTATTCATTTACTCATCAGCA
AACTTGGAAGAACGGTTCGAAATCTATGAATCCGTTATTCATGGATATGA
ACAACCTGACGTGGGGTTGGAGTTGGTTAGAACGATGG
back to top