g.arboreum_cottongen_reftransV1_0013307, g.arboreum_cottongen_reftransV1_0013307 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy TrEMBL
Match: G7JN49_MEDTR (P-loop nucleoside triphosphate hydrolase superfamily protein OS=Medicago truncatula GN=MTR_4g032220 PE=4 SV=2) HSP 1 Score: 468.389 bits (1204), Expect = 6.521e-160 Identity = 252/350 (72.00%), Postives = 293/350 (83.71%), Query Frame = -1 Query: 275 MMGGSAIDDDWEFTSP---------SNGIKTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELFAELKKGATKLRDQQEVVAALKGYSKREISEFKEQIERSYEEQLMRITEMVESKLKETTVRLEQQLAEEQAARLKAEELAQLAQMKSNDEIRKLRENLERAEKETEELRKQAAR--CAIL 1291 MMGGS ++DDWE S +N +TVVLVGRTGNGKSATGNSILGKK FKSRASSSGVTSSCE+Q L DGQI+NVIDTPGLF+ SAGSEFIGKEIVKCID AKDGIHA+LVV SVR+RFS+EEE ALRSLQTLFGSKIV+YMIVVFTGGDELE++E+TL+DYLGRECP+ LK IL LCGNR VLFDNKTKDE KR QVQ LL+ VN+++ QNGGQPYTDELFAELKKGA KL +Q V +L+GYS+ +ISE K+ ++++YEEQL ITEM+ESKLKE T RLE+QLAEEQAARL+AE+ A+LAQ KS+DEIRKLR++LE+A EELRK+ + CAIL Sbjct: 1 MMGGSYVEDDWELASSGSASEVQISANEARTVVLVGRTGNGKSATGNSILGKKVFKSRASSSGVTSSCEMQTAELSDGQIVNVIDTPGLFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVLSVRSRFSEEEENALRSLQTLFGSKIVDYMIVVFTGGDELEDDEDTLDDYLGRECPESLKQILSLCGNRCVLFDNKTKDEKKRSGQVQQLLSFVNLIVLQNGGQPYTDELFAELKKGAMKLHREQRKVDSLEGYSEGQISELKKHMQQTYEEQLKHITEMIESKLKEATTRLEKQLAEEQAARLRAEDSAKLAQKKSDDEIRKLRKHLEKAH---EELRKRGDKGGCAIL 347
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy TrEMBL
Match: V4TTG1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020992mg PE=4 SV=1) HSP 1 Score: 462.611 bits (1189), Expect = 9.269e-158 Identity = 246/340 (72.35%), Postives = 285/340 (83.82%), Query Frame = -1 Query: 275 MGGSAIDDDWEFTSPSNGIKTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELFAELKKGATKLRDQQEVVAALKGYSKREISEFKEQIERSYEEQLMRITEMVESKLKETTVRLEQQLAEEQAARLKAEELAQLAQMKSNDEIRKLRENLERAEKETEELRKQAAR--CAIL 1288 MGG ID D + SPSNG + +VLVGRTGNGKSAT NSILGKK+F S+A SSGVT +CE+Q+T+LK GQ++NVIDTPGLFD SA EF+ KEIVKCI +AKDGIHAVL+VFS+R RFS+EE AA+ L++LFG KI +YMIVVFTGGDELE+N+ETLEDYLGRECP+PLK+IL LC NR VLFDNKTKD KR QV LL+LVN VI QN GQPYTDE+FAELKKGATKLRD Q V +LKGYSKREISE KEQ+++SYE+QL R TEMVESKLKETT RLEQQLAEE ARLKAE AQLAQMKSN++I KLRE LER+++ET+ELR +A + C IL Sbjct: 1 MGGRVIDADSKPNSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIAQNAGQPYTDEIFAELKKGATKLRDTQVEVDSLKGYSKREISELKEQMQKSYEDQLKRTTEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQMKSNEKIFKLREKLERSQRETQELRNRAPQPPCPIL 340
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy TrEMBL
Match: Q9ZRD1_TOBAC (NTGP4 (Fragment) OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 462.225 bits (1188), Expect = 1.431e-157 Identity = 243/341 (71.26%), Postives = 296/341 (86.80%), Query Frame = -1 Query: 275 MGGSAIDDDWEFTSPSNGIKTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELFAELKKGATKLRDQQEVVAALKGYSKREISEFKEQIERSYEEQLMRITEMVESKLKETTVRLEQQLAEEQAARLKAEELAQLAQMKSNDEIRKLRENLERAEKETEELRKQAAR---CAIL 1288 MGGSAI DDWEF + NG +T+VLVGRTGNGKSATGNSILG+K+F+S +SS+GVTS+CELQ+TVL+DGQIL+VIDTPGLFDFSA EFIG EIVKCI++AKDGIHAVLVV SVRTRFS+EE+AA++SL+ FG KI +YM++VFTGGD+LE+NEETLEDYLGR+CP+PLKDIL +CGNR VLFDNK+KD K+ Q++ LL+LVN+V+E NGG+PYTD+LF ELKKGA KLR+Q V L GYSK+EI E KEQ+++SYEEQL RITE+VESKLK+TT RLE+QLA+EQAARL+AE A+ AQ KS++EIRKLRE LERA++ETEELR ++A C IL Sbjct: 6 MGGSAISDDWEFAA--NGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCELQRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSREEQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRRVLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNNLVGYSKQEILELKEQMQKSYEEQLRRITEVVESKLKDTTHRLEEQLAKEQAARLEAELSAKEAQKKSDNEIRKLREYLERAQRETEELRGRSADRGVCNIL 344
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy TrEMBL
Match: V7AGT1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G000400g PE=4 SV=1) HSP 1 Score: 454.907 bits (1169), Expect = 9.046e-155 Identity = 242/341 (70.97%), Postives = 290/341 (85.04%), Query Frame = -1 Query: 275 MGGSAIDDDWEFTSPS-NGIKTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELFAELKKGATKLRDQQEVVAALKG-YSKREISEFKEQIERSYEEQLMRITEMVESKLKETTVRLEQQLAEEQAARLKAEELAQLAQMKSNDEIRKLRENLERAEKETEELRKQA-ARCAIL 1288 MGG++IDDDWE TS S N ++TVVLVGRTGNGKSATGNSI+G++ F SRASSS V++SCELQ L DGQ +NVIDTPGLFD S+GSEF+GKEIVKCIDLAKDGIHA++VVFS+RTRF++EEE ALRSLQ LFGSKIV+YMIVVFTGGDELEEN E++E+YLGRECP+ LK+IL LC NR+VLFDNKTKDE KR QVQ LL+ VN+V+ +NGG+PYTDELF ELKKGA L +QQ +LKG YS+ I EF++Q+++ Y +QL RITEMVESKL E T+RL+QQL EEQAARLKAEE A LAQM+S++EIRKLRE+LE+A EELR++A + CAIL Sbjct: 1 MGGNSIDDDWELTSSSSNEVRTVVLVGRTGNGKSATGNSIIGRRVFLSRASSSAVSTSCELQTAELDDGQRVNVIDTPGLFDLSSGSEFVGKEIVKCIDLAKDGIHAIVVVFSIRTRFTEEEETALRSLQRLFGSKIVDYMIVVFTGGDELEENNESIEEYLGRECPKALKEILVLCENRVVLFDNKTKDEGKRSGQVQQLLSFVNIVLSRNGGRPYTDELFTELKKGAMNLHNQQRKFDSLKGHYSEGAILEFEKQMQQKYNDQLKRITEMVESKLSEATLRLKQQLDEEQAARLKAEEKAMLAQMRSDEEIRKLREHLEKAH---EELRQRAQSHCAIL 338
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy TrEMBL
Match: I3SDB7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 449.129 bits (1154), Expect = 1.414e-152 Identity = 236/339 (69.62%), Postives = 284/339 (83.78%), Query Frame = -1 Query: 275 MGGSAIDDDWEFTSPSNGIKTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELFAELKKGATKLRDQQEVVAALKGYSKREISEFKEQIERSYEEQLMRITEMVESKLKETTVRLEQQLAEEQAARLKAEELAQLAQMKSNDEIRKLRENLERAEKETEELRKQA-ARCAIL 1288 MGG++ D+DWE TS +N ++TVV VGRTGNGKSATGNSILGKK FKSRASS GVTSSCE T+ DGQ +NVIDTPGLFD SAGS+F+GKEIV CI+LAKDGIHA++VVFSVRTRFSQEE ALRSLQTLFG KI +Y +VVFTGGDELEE ++TLEDYLG +CP+PLKD+L LC NR +LFDNKTKDE KR QVQ L + VNMV+ QNGG+PYTD+LFAELKKGA KL +QQ V +L+G+S +EI E+K+Q +++Y++QL RI EMVESKL++ T+RLEQQLA+EQAARLKAEE A LA+++S+ EIR+LR++LERA EELRK RC IL Sbjct: 1 MGGNSFDEDWELTSSANEVRTVVSVGRTGNGKSATGNSILGKKVFKSRASSVGVTSSCE-SHTIELDGQTVNVIDTPGLFDISAGSDFVGKEIVNCINLAKDGIHAIIVVFSVRTRFSQEEATALRSLQTLFGDKIYDYTVVVFTGGDELEEEDQTLEDYLGCDCPEPLKDLLSLCENRRLLFDNKTKDERKRSEQVQQLFSFVNMVLSQNGGRPYTDDLFAELKKGALKLHNQQSQVNSLEGHSNKEILEYKKQAKQAYDDQLKRIAEMVESKLRDATLRLEQQLAKEQAARLKAEENANLARVRSDKEIRELRKHLERAH---EELRKHGENRCGIL 335
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Match: AIG1_ARATH (Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 9.421e-82 Identity = 162/334 (48.50%), Postives = 231/334 (69.16%), Query Frame = -1 Query: 275 IDDDWEFT-SPSNGIKTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELFAELKKGATKLRDQQEVVAALKGYSKREISEFKEQIERSYEEQLMRITEMVESKLKETTVRLEQQLAEEQAARLKAEELAQLAQMKSNDEIRKLRENLERAEKETEELRKQAARCAIL 1273 +D EF+ S + ++ +VLVGRTGNGKSATGNSI+ K FKS+ SSGVT C K V +G ILNVIDTPGLFD S +EFIGKEIVKC+ LA G+HAVL+V SVRTR SQEEE L +LQ LFGSKIV+Y+IVVFTGGD LE++ TLEDYLG P LK +L LCG R++LFDNKTKD+ K+ QV +LL L+++V +QN PYTDE++ +K+ + + +QE + + KG+S+ +++ ++++ E L + EM+E +K + +++L E+ R KA+E++ +M+ ++++++ E RAE E + L +Q +C+IL Sbjct: 28 VDHKDEFSASQPHPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELES-KGHSEEQLAALMKELQIMNERNLKAMAEMMEKNMK-IAMEAQEKLFEQ---REKAQEMSYQQKMEMQEKLKQM-EGRMRAEMEAQMLSRQ--QCSIL 353
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Match: P2A03_ARATH (Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=3 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 1.713e-64 Identity = 144/327 (44.04%), Postives = 215/327 (65.75%), Query Frame = -1 Query: 281 SNGIKTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELFAELK-KGATKLRDQQEVVAALKGYSKREISEFKEQIERSYEEQLMRITEMVESKLKETTVRLE--QQLAEEQAARLKAE-ELAQLAQMKSNDEIRKLRENLERAEKETEELRKQAAR--CA 1243 S IK +VLVGRTGNGKS+TGN++LG K FKS+ + GVT CE+ + ++DG I+NVIDTPGL D + I EI+ C+ +A++GIHAVL+V S R R S+EEE+ + +LQ +FGS+I++Y IVVFTGGD+LEE+++TL+DY CP+ L +L LCG R VLFDNK+KDE K+V QV+ LL V V EQ GG PYT +L ++K + +LR+++ V+ + K ++ E++E ++ + E+ +M E+K K+ + E ++L E++ A+ +AE ELA + + E L+ E++ ++L QA R CA Sbjct: 2 SEPIKNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGLCDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDYCIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQLLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIES-KNRAEAELAEMQQNLLMEKEK-----LQMEEAKNKQLIAQAEANEKLMEQERAKNRAETELAAV-----------MVEKLQMEEEKNKQLIAQANRMICA 311
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Match: GIMA4_HUMAN (GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 3.975e-36 Identity = 88/277 (31.77%), Postives = 160/277 (57.76%), Query Frame = -1 Query: 416 PSNGIKTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELFAELKKGATKLRDQQEVVAALKGYSKREISEFKEQIERSYEEQLMRITEMVESKLKETTVRLEQQLAEEQA 1246 P N +VLVG+TG GKSATGNSILG+K F S ++ +T CE + + K+ +++ V+DTPG+FD + KEI++CI L G HA+L+V + R+++EE A + +FG + ++MI++F + + + L DYL RE P+ ++D++ + G+R +NK + + Q LL L+ V+ +N YT+ ++ ++ + Q+ A++ + E+ K +I YEE++ ++ + VE + ++ ++E++LAE++A Sbjct: 26 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGERARSFMILIF--TRKDDLGDTNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQ-LLGLIQRVVRENKEGCYTNRMYQRAEE------EIQKQTQAMQELHRVELEREKARIREEYEEKIRKLEDKVEQEKRKK--QMEKKLAEQEA 288
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Match: GIMA4_RAT (GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.989e-27 Identity = 70/200 (35.00%), Postives = 118/200 (59.00%), Query Frame = -1 Query: 626 VVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELF 1225 +VL+G+TG GKS+TGNSILG+K+F S + +T CE + + DG+ L V+DTPG+FD KEI +C+ L G HA+L+V + ++ EE A R L ++F K +MI++ + + + + +YL P+ L++++ NR LF+NK ++ Q + LLTLV ++ +NGG+ +T++++ Sbjct: 33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFDTEVPDADTQKEITRCVALTSPGPHALLLVIPLGC-YTVEEHKATRKLLSMFEKKARRFMILLL--TRKDDLEDTDIHEYL-ETAPEVLQELIYEFRNRYCLFNNKASG-AEQEEQKRQLLTLVQSMVRENGGKYFTNKMY 226
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Match: GIMA7_HUMAN (GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.436e-27 Identity = 73/218 (33.49%), Postives = 130/218 (59.63%), Query Frame = -1 Query: 575 VVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTK-DETKRVTQVQDLLTLVNMVIEQNGGQPYTDELFAELKKGATKLRDQQEVV 1225 +VLVG+TG+GKSAT N+ILG++ F SR ++ VT +C+ + + G+ L V+DTPGLFD + KEI +CI + G HA+++V + R+++EE+ + ++ +FG + +M+++FT +ELE + LK I+ CGNR F N K + ++ +QVQ+L+ L+ +++ N G ++D+++ K +L+ ++EV+ Sbjct: 11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFDTKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMVILFTRKEELEGQSFHD---FIADADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQELVELIEKMVQCNEGAYFSDDIY---KDTEERLKQREEVL 220
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Match: GIMA1_MOUSE (GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3) HSP 1 Score: 111.694 bits (278), Expect = 1.972e-26 Identity = 73/219 (33.33%), Postives = 123/219 (56.16%), Query Frame = -1 Query: 572 VVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGK-EIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELFAELKKGATKLRDQQEVVA 1225 ++LVGRTG GKSATGNSILG+K F SR + VT SC L + Q+ V+DTP +F G E +C L+ G HA+L+V + RF+ ++ AL +++ LFG +++ +VVFT ++L + + + L+D++ CG R+ +N+ ++R Q + LL +V ++ ++GG Y++E++ ++ T+ D Q+ VA Sbjct: 6 LILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQV-EVVDTPDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQL-GRFTMQDSQALAAVKRLFGKQVMARTVVVFTRQEDLAGDSLQDYVHCTDN--RALRDLVAECGGRVCALNNRATG-SEREAQAEQLLGMVACLVREHGGAHYSNEVYELVQD--TRCADPQDQVA 217
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Match: GIMA1_HUMAN (GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.700e-25 Identity = 73/227 (32.16%), Postives = 128/227 (56.39%), Query Frame = -1 Query: 569 KTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIG-KEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELF--AELKKGAT---KLRDQQEVVAA 1231 + ++LVGRTG GKSATGNSILG++ F SR ++ VT +C D + V+DTP +F G +E C L+ G HA+L+V + RF+ +++ A+R ++ +FG ++ +M++VF + + +L DY+ + L++++ CG R+ FDN+ + QV+ LL +V ++ ++ G Y++E++ A++ + A +LR E VAA Sbjct: 28 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLKWMVIVF--TRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEA-QVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPEERLRRVAERVAA 249
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Match: GIMA8_HUMAN (GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 2.305e-24 Identity = 69/195 (35.38%), Postives = 119/195 (61.03%), Query Frame = -1 Query: 641 VVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPY 1225 ++L+G+ +GKSATGN+ILGK FKS+ S V C+ + VL++ +++ VIDTP LF A +E + I C++L+ +HA+L+V ++ F++E+E + +Q +FG++ ++I+VFT D+L ++ E +PLK ++ R +F+NKT + +++TQV +LL V ++ NGG PY Sbjct: 13 LLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-VIDTPDLFSSIACAEDKQRNIQHCLELSAPSLHALLLVIAI-GHFTREDEETAKGIQQVFGAEARRHIIIVFTRKDDLGDDLLQDFI----EKNKPLKQLVQDYEGRYCIFNNKTNSKDEQITQVLELLRKVESLVNTNGG-PY 200 HSP 2 Score: 100.908 bits (250), Expect = 1.940e-21 Identity = 73/228 (32.02%), Postives = 125/228 (54.82%), Query Frame = -1 Query: 560 TVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPG---LFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNG--GQPYTDELFAELKKGATKLRDQQEVVAALKG 1228 +VLVGR+G GKSATGNSILG F SR + VT + + + DGQ + V+DTP + D + +E+ +C+ + G ++VF + RF++E++ A+ L+ +FG+ Y I++F + + LED++ + L+ I CG R+ F+NK + + TQV+ LLT VN + +++G G P+T E ++L K ++ ++++ L G Sbjct: 440 NIVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFNQMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTAVAKLEAIFGADFTKYAIMLF--TRKEDLGAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQE-TQVKALLTKVNDLRKESGWSGYPHTQENVSKLIKNVQEMSQAEKLLKNLIG 662 HSP 3 Score: 70.4774 bits (171), Expect = 1.457e-11 Identity = 59/202 (29.21%), Postives = 103/202 (50.99%), Query Frame = -1 Query: 647 SPSNGIKTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNK-TKDETKRVTQVQDLLTLVNMVIEQNGGQ 1249 +P TV+LVG+ G GKSA GNSILG+++F++ S VT S + + ++ ++ID P + + K I G HA L+V + +++ +EA L ++Q FG K YMI++ + + ++ L+ +L R + L ++ C NR F+ + T +E +R Q +LL + ++ QNG + Sbjct: 242 NPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQSVTQSFLSESRSWRKKKV-SIIDAPDISSLKNIDSEVRKHICT-------GPHAFLLVTPL-GFYTKNDEAVLSTIQNNFGEKFFEYMIILL--TRKEDLGDQDLDTFL-RNSNKALYGLIQKCKNRYSAFNYRATGEEEQR--QADELLEKIESMVHQNGNK 429
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Match: GIMA6_MOUSE (GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.740e-23 Identity = 77/201 (38.31%), Postives = 122/201 (60.70%), Query Frame = -1 Query: 629 VVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLK-DGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGL-CGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDEL 1225 ++LVG+TG+GKSATGNSILG+++F+S+ S+ VT++ QK + +G+ L VIDTP +F E K+I C LA G HAVL+V V R++ E++A R LQ +FG+ I+ Y I+VF + + E +LE+Y+ + L D+L + C R F+NK + + + Q++ L+ V +++ +N G YT E Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTT--FQKGTREFEGKELEVIDTPDIFSPQNQPEATAKKI--CDLLASPGPHAVLLVIQV-GRYTAEDQAVARCLQEIFGNTILAYTILVF--TRKEDLAEGSLEEYIQENNNKSL-DVLDVACERRHCGFNNKAQGDEQEA-QLKKLMEEVELILWENEGHCYTMEF 297
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Match: GIMA5_HUMAN (GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 3.497e-22 Identity = 76/270 (28.15%), Postives = 149/270 (55.19%), Query Frame = -1 Query: 476 DDDWEFTSPSNGIKTVVLVGRTGNGKSATGNSILGKKSFKSRASSSGVTSSCELQKTVLKDGQILNVIDTPGLFDFSAGSEFIGKEIVKCIDLAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIVNYMIVVFXXXXXXXXXXXXXXDYLGRECPQPLKDILGLCGNRLVLFDNKTKDETKRVTQVQDLLTLVNMVIEQNGGQPYTDELF--AEL--KKGATKLR-DQQEVVAALKGYSKREISEFKEQIERSYEEQLMRITEMV 1270 +D+ T P+ ++LVG+TG GKSATGNSILG+ F+S+ + VT +C++ KT +G+ + V+DTP +F+ A ++ + K I C L+ G H +L+V + RF+ ++ A+R ++ +FG+ + +++++F + + + L+DY+ LKD++ C R F+N E +R Q +LL ++ + + G ++++LF A+L + GA + D ++ A ++ ++ E +E + L+R+ ++ Sbjct: 18 EDNLSATPPA---LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-KTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQDTVAIRKVKEVFGTGAMRHVVILF--THKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQA-ELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQAKVEWQVEKHKQELRENESNWAYKALLRVKHLM 279 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0013307 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013307 ID=g.arboreum_cottongen_reftransV1_0013307; Name=g.arboreum_cottongen_reftransV1_0013307; organism=Gossypium arboreum; type=contig; length=1375bpback to top |