g.arboreum_cottongen_reftransV1_0002977, g.arboreum_cottongen_reftransV1_0002977 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002977
Unique Nameg.arboreum_cottongen_reftransV1_0002977
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1106
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0002977 vs. ExPASy TrEMBL
Match: A0A0D2TQF7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G237000 PE=4 SV=1)

HSP 1 Score: 467.618 bits (1202), Expect = 8.755e-159
Identity = 228/285 (80.00%), Postives = 258/285 (90.53%), Query Frame = -3 
Query:  250 SRCGMKSKRFGKLCKPLTWKHGDIFLMCXXXXXXXXXXXLKQDSLPPSYRSFLNKHGGKDLVILQGVKEIASGLPFTNLEAIEKLYKASGVDVKLDPNMKIPCSMIHGNQSCSAHVISFFTEGYKRALPVYLPVYLIPALIVHRQDLLKRPSTILRKGIVGTARSSLFLSAYCTSAWLWTCLLFRLFRRCNIPMVAMGTFPTGLALAIEKKSRRIEISLYCLARAIESLFTCMADVGYLPKSMYLKRADVVIFSLSTAIIMHCYAQEREVFRSKYLSVLDWVFGV 1104
            SRCG+KSKRFGK CKPLTWKHGDIFLMCLS+S+ILSSYILKQD LPPSY+SFLN+HGGKD+VILQGVKE+AS LPFT LEAIEK+YKA+GVDVKLDPNMKIPCSM+HGN+SC AH I+F  E YKRALPVYLPVYLIPALIVH Q L KRP TIL KGIV  ARSSLFL+ YCTSAW+WTC+LF   RRC+IP++A+G+FP GL++AIEKKSRR+EISLYCLARAIES FT +AD+GYLP+S  LKR DV+IFSLSTAIIMHCYAQERE+F SKYL+VLDW+FGV
Sbjct:  195 SRCGIKSKRFGKFCKPLTWKHGDIFLMCLSTSEILSSYILKQDCLPPSYKSFLNQHGGKDIVILQGVKELASDLPFTTLEAIEKIYKATGVDVKLDPNMKIPCSMVHGNKSCRAHAITFLIEAYKRALPVYLPVYLIPALIVHHQGLFKRPCTILGKGIVDIARSSLFLATYCTSAWMWTCMLFGFLRRCSIPLIAIGSFPAGLSVAIEKKSRRMEISLYCLARAIESFFTWVADIGYLPRSKNLKRPDVMIFSLSTAIIMHCYAQERELFNSKYLNVLDWIFGV 479
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BLAST of g.arboreum_cottongen_reftransV1_0002977 vs. ExPASy TrEMBL
Match: A0A0B0PAC0_GOSAR (Transmembrane protein OS=Gossypium arboreum GN=F383_00523 PE=4 SV=1)

HSP 1 Score: 463.381 bits (1191), Expect = 1.032e-157
Identity = 228/294 (77.55%), Postives = 257/294 (87.41%), Query Frame = -3 
Query:  250 SRCGMKSKRFGKLCKPLTWKHGDIFLMCXXXXX---------XXXXXXLKQDSLPPSYRSFLNKHGGKDLVILQGVKEIASGLPFTNLEAIEKLYKASGVDVKLDPNMKIPCSMIHGNQSCSAHVISFFTEGYKRALPVYLPVYLIPALIVHRQDLLKRPSTILRKGIVGTARSSLFLSAYCTSAWLWTCLLFRLFRRCNIPMVAMGTFPTGLALAIEKKSRRIEISLYCLARAIESLFTCMADVGYLPKSMYLKRADVVIFSLSTAIIMHCYAQEREVFRSKYLSVLDWVFGV 1104
            SRCG+KSKRFGK CKPLTWKHGDIFLMCLS+S+           SSYILKQD LPPSY+SFLN+HGGKD+VILQGVKE+ASGLPFT LEAIEK+YKA+GVDVKLDPNMKIPCSM+HGN+SC AH I+F  E YKRALPVYLPVYLIPALIVH Q L KRP TIL KGIV  ARSSLFL+ YCTSAW+WTC+LF   RRC+IP++A+G+FP GL++AIEKKSRR+EISLYCLARAIES FT MAD+GYLP+S  LKR DV+IFSLSTAIIMHCYAQERE+F SKYL+VLDW+FGV
Sbjct:  148 SRCGIKSKRFGKFCKPLTWKHGDIFLMCLSTSEILYVTPVKFSRSSYILKQDCLPPSYKSFLNQHGGKDIVILQGVKELASGLPFTTLEAIEKIYKATGVDVKLDPNMKIPCSMVHGNKSCRAHAITFLIEAYKRALPVYLPVYLIPALIVHHQGLFKRPCTILGKGIVDIARSSLFLATYCTSAWMWTCILFGFLRRCSIPLIAIGSFPAGLSVAIEKKSRRMEISLYCLARAIESFFTWMADIGYLPRSKNLKRPDVMIFSLSTAIIMHCYAQERELFNSKYLNVLDWIFGV 441
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BLAST of g.arboreum_cottongen_reftransV1_0002977 vs. ExPASy TrEMBL
Match: R0I3M8_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10008861mg PE=4 SV=1)

HSP 1 Score: 465.692 bits (1197), Expect = 1.193e-157
Identity = 228/284 (80.28%), Postives = 254/284 (89.44%), Query Frame = -3 
Query:  253 SRCGMKSKRFGKLCKPLTWKHGDIFLMCXXXXXXXXXXXLKQDSLPPSYRSFLNKHGGKDLVILQGVKEIASGLPFTNLEAIEKLYKASGVDVKLDPNMKIPCSMIHGNQSCSAHVISFFTEGYKRALPVYLPVYLIPALIVHRQDLLKRPSTILRKGIVGTARSSLFLSAYCTSAWLWTCLLFRLFRRCNIPMVAMGTFPTGLALAIEKKSRRIEISLYCLARAIESLFTCMADVGYLPKSMYLKRADVVIFSLSTAIIMHCYAQEREVFRSKYLSVLDWVFG 1104
            SRCG+KSKRFG +CKPLTWKHGD+FLMCLSSSQILS+YILKQ+SLP SY+SFLNKHGGKDL ILQGVK+IAS  PFTNL AIEK YK+ GVD+KLDPNMK+PCS+IHGN+SC  H I+FF E YKRALPVY+PVYLIPALIVHRQDLLK+  +IL KG++GTARSSLFLS YC+SAW WTCLLFR F  CNIP+VA+ TFPTGLALAIEKKSRRIEISLYCLARAIES FTCM D GY+     L+RADVV+FS+STAIIMHCYAQEREVFRSKYL+VLDWVFG
Sbjct:  217 SRCGIKSKRFGTICKPLTWKHGDLFLMCLSSSQILSAYILKQESLPSSYKSFLNKHGGKDLSILQGVKDIASAQPFTNLRAIEKYYKSVGVDMKLDPNMKVPCSIIHGNESCVKHGITFFLEAYKRALPVYVPVYLIPALIVHRQDLLKKQYSILGKGLLGTARSSLFLSTYCSSAWAWTCLLFRTFETCNIPLVAIATFPTGLALAIEKKSRRIEISLYCLARAIESFFTCMTDAGYIRPPKSLRRADVVVFSVSTAIIMHCYAQEREVFRSKYLNVLDWVFG 500
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BLAST of g.arboreum_cottongen_reftransV1_0002977 vs. ExPASy TrEMBL
Match: K4BTV2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g074140.2 PE=4 SV=1)

HSP 1 Score: 462.996 bits (1190), Expect = 4.280e-157
Identity = 226/285 (79.30%), Postives = 257/285 (90.18%), Query Frame = -3 
Query:  250 SRCGMKSKRFGKLCKPLTWKHGDIFLMCXXXXXXXXXXXLKQDSLPPSYRSFLNKHGGKDLVILQGVKEIASGLPFTNLEAIEKLYKASGVDVKLDPNMKIPCSMIHGNQSCSAHVISFFTEGYKRALPVYLPVYLIPALIVHRQDLLKRPSTILRKGIVGTARSSLFLSAYCTSAWLWTCLLFRLFRRCNIPMVAMGTFPTGLALAIEKKSRRIEISLYCLARAIESLFTCMADVGYLPKSMYLKRADVVIFSLSTAIIMHCYAQEREVFRSKYLSVLDWVFGV 1104
            SRCG+KSKRFG++CKPLTW HGDIFLMCLSSSQILS+YILKQDSL PSY+SFLNKHGGK LVILQGVK++A G    NLEAIE  YK++G+++KLDP MK+PCS++H NQ C AH ISF  + YKRALPVYLPVYL+PALIVHRQ +LKRP+TIL KG++GTARSSLFLS YC+SAWLWTC LFRLF+RCNIPMVA+GTFPTGLALAIEKKSRRIEISLYCLARA+ES  TCMADVGYLP+S  LKR DVVIFS++TAIIMHCYA ER+VF+SKYL+VLDWVFGV
Sbjct:  189 SRCGIKSKRFGRICKPLTWAHGDIFLMCLSSSQILSAYILKQDSLHPSYKSFLNKHGGKALVILQGVKDLACGNSVMNLEAIENHYKSNGINIKLDPQMKVPCSIVHENQGCGAHFISFLIQAYKRALPVYLPVYLVPALIVHRQGILKRPNTILAKGLLGTARSSLFLSMYCSSAWLWTCFLFRLFKRCNIPMVALGTFPTGLALAIEKKSRRIEISLYCLARALESFVTCMADVGYLPQSEKLKRGDVVIFSMATAIIMHCYAMERDVFKSKYLNVLDWVFGV 473
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BLAST of g.arboreum_cottongen_reftransV1_0002977 vs. ExPASy TrEMBL
Match: D7KK79_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_891060 PE=4 SV=1)

HSP 1 Score: 461.84 bits (1187), Expect = 9.221e-157
Identity = 226/285 (79.30%), Postives = 254/285 (89.12%), Query Frame = -3 
Query:  250 SRCGMKSKRFGKLCKPLTWKHGDIFLMCXXXXXXXXXXXLKQDSLPPSYRSFLNKHGGKDLVILQGVKEIASGLPFTNLEAIEKLYKASGVDVKLDPNMKIPCSMIHGNQSCSAHVISFFTEGYKRALPVYLPVYLIPALIVHRQDLLKRPSTILRKGIVGTARSSLFLSAYCTSAWLWTCLLFRLFRRCNIPMVAMGTFPTGLALAIEKKSRRIEISLYCLARAIESLFTCMADVGYLPKSMYLKRADVVIFSLSTAIIMHCYAQEREVFRSKYLSVLDWVFGV 1104
            SRCG+KSKRFG +CKPLTWKHGD+FLMCLSSSQILS+YILKQ+SLP SY+SFLNK GGKDL ILQGVK+IAS  PFTNL AIEK YK+ GVD+KLDPNMK+PCS+IHGN+SC  H I+FF + YKRALPVY+PVYLIPALIVHRQDLLK+  +IL KG++GTARSSLFL+ YC+SAW WTCLLFR F  CNIP+VA+ TFPTGLALAIEKKSRRIEISLYCLARAIES FTCM D GY+     L+RADVV+FS+STAIIMHCYAQEREVFRSKYL+VLDWVFGV
Sbjct:  185 SRCGIKSKRFGSICKPLTWKHGDLFLMCLSSSQILSAYILKQESLPSSYKSFLNKQGGKDLSILQGVKDIASAQPFTNLRAIEKYYKSVGVDIKLDPNMKVPCSIIHGNESCVKHGITFFLQAYKRALPVYVPVYLIPALIVHRQDLLKKQYSILGKGLLGTARSSLFLATYCSSAWAWTCLLFRTFETCNIPLVAIATFPTGLALAIEKKSRRIEISLYCLARAIESFFTCMTDAGYIRPPKSLRRADVVVFSVSTAIIMHCYAQEREVFRSKYLNVLDWVFGV 469
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002977 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TQF7_GOSRA8.755e-15980.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0PAC0_GOSAR1.032e-15777.55Transmembrane protein OS=Gossypium arboreum GN=F38... [more]
R0I3M8_9BRAS1.193e-15780.28Uncharacterized protein (Fragment) OS=Capsella rub... [more]
K4BTV2_SOLLC4.280e-15779.30Uncharacterized protein OS=Solanum lycopersicum GN... [more]
D7KK79_ARALL9.221e-15779.30Putative uncharacterized protein OS=Arabidopsis ly... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002977 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031926Transmembrane protein 135, N-terminal domainPFAMPF15982TMEM135_C_richcoord: 106..227
e-value: 6.8E-9
score: 36.2
NoneNo IPR availablePANTHERPTHR12459:SF6TRANSMEMBRANE PROTEINcoord: 1..285
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..141
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..123
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 205..212
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 213..234
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 188..204
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 183..187
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 240..261
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 262..294
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 162..182
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 142..161
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 235..239
IPR026749Transmembrane protein 135PANTHERPTHR12459UNCHARACTERIZEDcoord: 1..285

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002977 ID=g.arboreum_cottongen_reftransV1_0002977; Name=g.arboreum_cottongen_reftransV1_0002977; organism=Gossypium arboreum; type=contig; length=1106bp
TTGGAATCTCATTCAAAATGCATTGCTATATTTAGTACAAGTCCCACAGC
ACACCCGTGCAGACCCAAGAGAAGAATACATGAATTCGAGGACTTTCCAC
ACCAGGGCCTGGATTCAAGCCCTTAGACCCAACATGCAATTAGAGTCGTA
AGACGAACACTTCGGTGGCTGCCAGGAAATACCTGAGTCCAAAGCCCTGT
GAACTGCTCATCTGTTTTTGCAGGGAGGAGTTTCACATGGGGGAGGGGGC
ACACCAAAGACCCAATCGAGAACACTTAAGTACTTGGAACGGAACACTTC
CCTCTCCTGTGCGTAGCAGTGCATTATTATCGCTGTTGACAAGCTAAATA
TTACCACATCAGCTCTCTTCAGATACATTGACTTGGGCAAATACCCAACA
TCTGCCATGCATGTAAACAAGCTCTCTATGGCTCGTGCAAGGCAGTAGAG
TGATATCTCAATCCGTCTACTTTTCTTCTCAATTGCCAAGGCCAGACCCG
TCGGAAACGTTCCCATTGCTACCATCGGTATGTTACATCTTCTGAAAAGC
CTAAACAGCAGGCAAGTCCACAACCAAGCAGATGTGCAATAAGCAGACAA
AAATAAGCTTGATCTGGCAGTACCAACAATACCCTTTCTTAATATTGTGG
AAGGCCTTTTTAAGAGGTCTTGACGATGAACTATTAATGCAGGAATTAAA
TAAACTGGAAGATATACTGGTAATGCCCTTTTATATCCTTCAGTGAAAAA
AGAAATAACATGTGCACTGCATGATTGATTCCCATGTATCATCGAGCAAG
GGATTTTCATGTTTGGATCTAATTTAACATCTACTCCTGATGCCTTGTAA
AGTTTCTCTATTGCCTCCAAATTAGTGAATGGAAGACCACTGGCAATCTC
TTTTACACCTTGCAAGATGACAAGATCCTTTCCACCATGTTTATTGAGAA
AGGACCTATATGATGGGGGCAAACTGTCTTGCTTCAAAATGTAAGATGAC
AAAATTTGCGAAGAGGAGAGACACATAAGGAATATGTCACCATGCTTCCA
TGTAAGAGGTTTACAAAGCTTCCCAAATCGTTTACTCTTCATTCCGCAGC
GCGAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031926TMEM135_N
IPR026749Tmem135