g.arboreum_cottongen_reftransV1_0013038, g.arboreum_cottongen_reftransV1_0013038 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0013038
Unique Name	g.arboreum_cottongen_reftransV1_0013038
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	513

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr12	chromosome	g.arboreum_cottongen_reftransV1_0013038:1..513 . Chr12:121744077..121744589 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A067K3A8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17863 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 5.399e-69
Identity = 120/157 (76.43%), Postives = 135/157 (85.99%), Query Frame = 1

Query:    7 GPQGASQVPPNQMGMN--VNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXX-XXXXXXXXXXNEGFGKGGNMNYQ 468
            GP+G  Q+P NQ+ +N  VN P MNENQ+RPP+ENG T+LFVGELHWWTTDAELESVLSQYG+VKEIKFFDERASGKSKG+CQVEFYD+A+AAACKEGMNG++FNGR CVVAFASPQTLKQMGASYMNK QGQ        R  N+G G+GGNMNYQ
Sbjct:  190 GPRGIQQLPGNQISINIDVNRPGMNENQIRPPVENGSTVLFVGELHWWTTDAELESVLSQYGKVKEIKFFDERASGKSKGFCQVEFYDAAAAAACKEGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKTQGQPQTQNQARRPMNDGVGRGGNMNYQ 346

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A067K4M1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17872 PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 2.982e-68
Identity = 117/157 (74.52%), Postives = 132/157 (84.08%), Query Frame = 1

Query:    7 GPQGASQVPPNQMGMN--VNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDX-XXXXXXXXXXXXNEGFGKGGNMNYQ 468
            GP+G  Q+P NQ+ +N  VN P +NENQ+RPP+ENG T+LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKG+CQVEFYD+A+AAACKEGMNG++FNGR CVVAFASPQTLKQMGASYMNK Q          R  N+G G+G NMNYQ
Sbjct:  191 GPRGMPQLPGNQISINMDVNRPTVNENQIRPPVENGSTVLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGFCQVEFYDAAAAAACKEGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKTQGQSQTQNQGRRPMNDGAGRGDNMNYQ 347

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: V4TNK7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030917mg PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.490e-67
Identity = 121/157 (77.07%), Postives = 135/157 (85.99%), Query Frame = 1

Query:    7 GPQGASQVPPNQMGMN--VNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXX-XXXXXXXXXXNEGFGKGGNMNYQ 468
            GPQGA  +P NQMG+N  VN  M+NENQ+RPP+ENG TMLFVGELHWWTTDAELESVLSQYGR KEIKFFDERASGKSKGYCQVEF+D+A+AAACK+GMNG++FNGR CVVAFASPQTLKQMGASYMNK+QGQ        R  N+G G+GGN NYQ
Sbjct:  194 GPQGA-LIPANQMGVNANVNRVMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRAKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQNQGSRPMNDGGGRGGNTNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: W9S1C3_9ROSA (Cleavage and polyadenylation specificity factor subunit OS=Morus notabilis GN=L484_027639 PE=4 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 8.724e-67
Identity = 115/157 (73.25%), Postives = 133/157 (84.71%), Query Frame = 1

Query:    7 GPQGASQVPPNQMGMNVN--HPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXX-XXXXXXNEGFGKGGNMNYQ 468
            GP+G   +  NQ  +N N  HP++NENQ+RP IENG TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVE+YD+A+A ACKEGM+G++FNGRACVVAFASPQTLKQMGA+YM+K+Q Q Q Q    R  N+G G+GGN N+Q
Sbjct:  186 GPRGILPMQGNQTTVNANVSHPIVNENQIRPSIENGSTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEYYDAAAAVACKEGMHGHVFNGRACVVAFASPQTLKQMGAAYMSKNQVQNQSQPQGRRPINDGVGRGGNPNFQ 342

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: B9HTF7_POPTR (RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0010s06150g PE=4 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 5.842e-66
Identity = 122/159 (76.73%), Postives = 137/159 (86.16%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMN--VNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXX-XXNEGFGKGGNMNYQ 468
            + GP+G  Q+  NQM MN  VN P++NENQVRPPIENGPT L+VGELHWWTTDAELESV SQYGRVKEIKFFDERASGKSKGYCQV+FY++A+AAACKEGMN ++FNGR CVVAFAS QTLKQMGASYM+K QGQPQ Q QGR   N+G G+GGN NYQ
Sbjct:  133 SAGPRGVPQMQVNQMNMNADVNRPVVNENQVRPPIENGPTTLYVGELHWWTTDAELESVASQYGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNEHVFNGRPCVVAFASAQTLKQMGASYMSKTQGQPQPQSQGRGSMNDGMGRGGNANYQ 291

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: U5FY84_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06150g PE=4 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.897e-65
Identity = 122/159 (76.73%), Postives = 137/159 (86.16%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMN--VNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXX-NEGFGKGGNMNYQ 468
            + GP+G  Q+  NQM MN  VN P++NENQVRPPIENGPT L+VGELHWWTTDAELESV SQYGRVKEIKFFDERASGKSKGYCQV+FY++A+AAACKEGMN ++FNGR CVVAFAS QTLKQMGASYM+K QGQPQ Q QGR   N+G G+GGN NYQ
Sbjct:  133 SAGPRGVPQMQVNQMNMNADVNRPVVNENQVRPPIENGPTTLYVGELHWWTTDAELESVASQYGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNEHVFNGRPCVVAFASAQTLKQMGASYMSKTQGQPQPQSQGRGSMNDGMGRGGNANYQ 291

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: B9HLD1_POPTR (RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0008s18280g PE=4 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.363e-65
Identity = 115/159 (72.33%), Postives = 132/159 (83.02%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGM--NVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXX-XXXXXXXXXXNEGFGKGGNMNYQ 468
            + GP+GA Q+  NQM M  +VN P++NENQVRPPIENG T L+VGELHWWTTDAELES  SQ+GRVKEIKFFDERASGKSKGYCQV+FY++A+AAACKEGMNG++FNGR CVVAFASPQTLKQMGASYMNK QGQ           N+G G+GGN N+Q
Sbjct:  178 SAGPRGAPQMQVNQMHMSADVNRPVVNENQVRPPIENGSTTLYVGELHWWTTDAELESFASQFGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKTQGQPQTQSQGRGSMNDGAGRGGNANFQ 336

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: B9RMS1_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_1083050 PE=4 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.388e-64
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNV--NHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXX-XXXXXXXXXXNEGFGKGGNMNYQ 468
             G P+   Q+P +QM MN+  N    NENQ+RPP+ENG TML+VGELHWWTTDAELE+VLSQYG VKEIKFFDERASGKSKGYCQVEFYD+A+AAACKEGMNG++FNGRACVVAFAS QTLKQMGASYMNK+QGQ        R  N+G G+GGNMNYQ
Sbjct:  181 AGVPRVIPQLPASQMNMNMDTNRSATNENQIRPPLENGSTMLYVGELHWWTTDAELENVLSQYGMVKEIKFFDERASGKSKGYCQVEFYDAAAAAACKEGMNGHLFNGRACVVAFASQQTLKQMGASYMNKNQGQPQSQNQGRRPMNDGAGRGGNMNYQ 339

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A068UYA0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_74 OS=Coffea canephora GN=GSCOC_T00038152001 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.664e-60
Identity = 109/162 (67.28%), Postives = 124/162 (76.54%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVN----HPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXX---NEGFGKGGNMNY 465
             G P+   QVP N M  + N     P++ ENQVRP +ENG TMLFVGELHWWTTD ELESVL+QYG+VKEIKFFDERASGKSKGYCQVEF D A+AAACKEGMNG++FNGRACVVA A+PQT+KQM ASYMNK Q Q Q Q Q +     N+G G+G   NY
Sbjct:  193 AGAPRVIPQVPANHMSSSSNVNSIRPVVTENQVRPAVENGNTMLFVGELHWWTTDTELESVLTQYGKVKEIKFFDERASGKSKGYCQVEFSDPAAAAACKEGMNGHVFNGRACVVALATPQTIKQMAASYMNKTQVQSQSQSQPQGRRPMNDGAGRGNGTNY 354

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: M1AQG2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010778 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.116e-60
Identity = 113/154 (73.38%), Postives = 129/154 (83.77%), Query Frame = 1

Query:    7 GPQGASQVPPNQMG----MNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXX-NEGFGKGG 453
            GP+    +P NQ+     +N+N+P+++E   RP +ENG TMLFVGELHWWTTDAELESVL+QYG VKEIKFFDERASGKSKGYCQVEF+D ASAAACKEGMNGY FNGRACVVAFA+PQT+KQMG+SY NK Q Q Q QPQGRRP NEG G+GG
Sbjct:  192 GPRVVPHMPTNQLNSSGNVNMNNPVISETPFRPSLENGNTMLFVGELHWWTTDAELESVLTQYGNVKEIKFFDERASGKSKGYCQVEFFDPASAAACKEGMNGYNFNGRACVVAFATPQTIKQMGSSYANKTQNQVQSQPQGRRPMNEGVGRGG 345

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: CPSF6_DROME (Cleavage and polyadenylation specificity factor subunit CG7185 OS=Drosophila melanogaster GN=CG7185 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 2.864e-11
Identity = 34/92 (36.96%), Postives = 52/92 (56.52%), Query Frame = 1

Query:  109 PTM-----LFVGELHWWTTDAELESVLSQYG--RVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQ 363
            PTM     L+VG L WWTTD ++ + L   G   ++E+KFF+ RA+G+SKG+  +     +S  A  + +     +G+A VV + S Q L Q
Sbjct:   87 PTMNRRYQLYVGNLTWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQ 178

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.117e-11
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T D  LE+  SQYG V + K  ++R +G+S+G+  V F D  S     EGMNG   +GR+  V
Sbjct:   11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITV 81

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 2.931e-10
Identity = 30/95 (31.58%), Postives = 50/95 (52.63%), Query Frame = 1

Query:  106 GPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKD 390
            GP  L+VG LH+  T+  L  +   +GR++ I+   +  +G+SKGY  + F DS  A    E +NG+   GR   V   + +T     +S+++ D
Sbjct:  248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSD 342

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 2.931e-10
Identity = 30/95 (31.58%), Postives = 50/95 (52.63%), Query Frame = 1

Query:  106 GPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKD 390
            GP  L+VG LH+  T+  L  +   +GR++ I+   +  +G+SKGY  + F DS  A    E +NG+   GR   V   + +T     +S+++ D
Sbjct:  248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSD 342

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.181e-10
Identity = 30/95 (31.58%), Postives = 50/95 (52.63%), Query Frame = 1

Query:  106 GPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKD 390
            GP  L+VG LH+  T+  L  +   +GR++ I+   +  +G+SKGY  + F DS  A    E +NG+   GR   V   + +T     +S+++ D
Sbjct:  248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSD 342

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.963e-10
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T D  LE   SQ+G + + K  ++R +G+S+G+  V F D  S     EGMNG   +GR   V
Sbjct:    9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITV 79

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.293e-10
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T D  LE+  +QYG V + K  ++R +G+S+G+  V F D  +     EGMNG   +GR+  V
Sbjct:   11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITV 81

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.559e-10
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T DAELE   SQ+G V + K  ++R +G+S+G+  V F D  S     + MNG   +GR   V
Sbjct:    9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITV 79

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 8.593e-10
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 1

Query:  112 TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            T LF+G L W T DA L    + +G V + K   +R +G+S+G+  V F D  +A A    M+G   NGR   V
Sbjct:   35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.138e-9
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T +  LE+  SQ+G + + K  ++R +G+S+G+  V F D  S     EGMNG   +GR+  V
Sbjct:   11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITV 81

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067K3A8_JATCU	5.399e-69	76.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A067K4M1_JATCU	2.982e-68	74.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
V4TNK7_9ROSI	1.490e-67	77.07	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
W9S1C3_9ROSA	8.724e-67	73.25	Cleavage and polyadenylation specificity factor su...	[more]
B9HTF7_POPTR	5.842e-66	76.73	RNA recognition motif-containing family protein OS...	[more]
U5FY84_POPTR	1.897e-65	76.73	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
B9HLD1_POPTR	7.363e-65	72.33	RNA recognition motif-containing family protein OS...	[more]
B9RMS1_RICCO	1.388e-64	73.58	RNA binding protein, putative OS=Ricinus communis ...	[more]
A0A068UYA0_COFCA	3.664e-60	67.28	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
M1AQG2_SOLTU	4.116e-60	73.38	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
CPSF6_DROME	2.864e-11	36.96	Cleavage and polyadenylation specificity factor su...	[more]
GRP1_SINAL	4.117e-11	43.66	Glycine-rich RNA-binding protein GRP1A OS=Sinapis ...	[more]
RBM39_MOUSE	2.931e-10	31.58	RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE...	[more]
RBM39_HUMAN	2.931e-10	31.58	RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE...	[more]
RBM39_PONAB	3.181e-10	31.58	RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE...	[more]
GRP1_DAUCA	3.963e-10	40.85	Glycine-rich RNA-binding protein OS=Daucus carota ...	[more]
RBG7_ARATH	4.293e-10	40.85	Glycine-rich RNA-binding protein 7 OS=Arabidopsis ...	[more]
GRP10_BRANA	4.559e-10	42.25	Glycine-rich RNA-binding protein 10 OS=Brassica na...	[more]
RBG2_ARATH	8.593e-10	37.84	Glycine-rich RNA-binding protein 2, mitochondrial ...	[more]
GRP2_SINAL	1.138e-9	39.44	Glycine-rich RNA-binding protein GRP2A OS=Sinapis ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 25..98 e-value: 1.3E-19 score: 81.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 26..94 e-value: 3.3E-17 score: 61.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 24..102 score: 14.368
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 11..137 e-value: 1.6E-25 score: 89.0
IPR012677	Nucleotide-binding alpha-beta plait domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..130
None	No IPR available	PANTHER	PTHR24012:SF425	F3F19.21 PROTEIN	coord: 23..107 coord: 129..157
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 23..107 coord: 129..157

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0013038 ID=g.arboreum_cottongen_reftransV1_0013038; Name=g.arboreum_cottongen_reftransV1_0013038; organism=Gossypium arboreum; type=contig; length=513bp
ACTGGTGGTCCTCAAGGAGCTTCACAGGTTCCGCCTAATCAAATGGGTAT
GAATGTAAATCATCCTATGATGAATGAAAATCAGGTTCGGCCACCTATAG
AGAATGGTCCAACAATGCTGTTTGTTGGTGAGTTACATTGGTGGACAACT
GATGCAGAGCTTGAGAGCGTTTTATCTCAATATGGAAGGGTGAAGGAGAT
TAAGTTCTTTGATGAGAGAGCTAGTGGCAAATCCAAAGGCTATTGTCAAG
TTGAGTTCTATGATTCAGCATCTGCAGCTGCATGTAAAGAGGGAATGAAT
GGTTATATGTTCAATGGTCGAGCTTGCGTTGTGGCTTTTGCTTCACCACA
AACATTGAAGCAGATGGGAGCGTCTTATATGAACAAAGACCAAGGCCAGC
CTCAAGTACAGCCTCAAGGAAGGAGGCCAAATGAAGGTTTTGGGAAAGGT
GGTAATATGAATTACCAAGGTGGGGATGCAGGTAGGAACTATGGAAGGGG
TGGCTGGGGACGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Search form

g.arboreum_cottongen_reftransV1_0013038, g.arboreum_cottongen_reftransV1_0013038 (contig) Gossypium arboreum

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