g.arboreum_cottongen_reftransV1_0013038, g.arboreum_cottongen_reftransV1_0013038 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013038
Unique Nameg.arboreum_cottongen_reftransV1_0013038
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0013038:1..513 .
Chr12:121744077..121744589 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A0B0PGJ9_GOSAR (Cleavage and polyadenylation specificity factor subunit OS=Gossypium arboreum GN=F383_09226 PE=4 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.414e-95
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 
Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ
Sbjct:  190 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ 345
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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A0D2W0D0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G173800 PE=4 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.377e-95
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 
Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ
Sbjct:  190 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ 345
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E6X2_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_010663 PE=4 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.230e-88
Identity = 143/156 (91.67%), Postives = 150/156 (96.15%), Query Frame = 1 
Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQGA  VPPNQMG+NVNHPM++ENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYD ASAAACKEGM+GYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPN+G G+GGNMNYQ
Sbjct:  194 TGGPQGAPHVPPNQMGLNVNHPMISENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDPASAAACKEGMDGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNDGLGRGGNMNYQ 349
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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E722_THECC (RNA-binding family protein isoform 6 OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 6.114e-86
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1 
Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349
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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E6X5_THECC (RNA-binding family protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 9.766e-86
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1 
Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E718_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.030e-85
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1 
Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061EER0_THECC (RNA-binding family protein isoform 4 OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.555e-85
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1 
Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: F6GVJ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0137g00270 PE=4 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 7.352e-74
Identity = 120/158 (75.95%), Postives = 132/158 (83.54%), Query Frame = 1 
Query:    1 TGGPQGASQVPPNQMGMNVN--HPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGP+   Q+  NQMGMNVN   PM+NENQ+RP ++NG TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYD+++AAACKEGMNGY+FNGRACVVAFASPQTLKQMGASYMNK           R  N+G G+GG MN Q
Sbjct:  190 TGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGASYMNK-TQAQSQSQGRRPMNDGVGRGGGMNMQ 346
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: M5XN02_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002814mg PE=4 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 9.177e-73
Identity = 121/159 (76.10%), Postives = 135/159 (84.91%), Query Frame = 1 
Query:    1 TGGPQGASQVPPNQMGM--NVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXX-XXXXXNEGFGKGGNMNYQ 468
            T GP G +Q+P NQ+ +  N N PM NENQ+RPP+ENG TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEF+D A+A ACKEGM+GY+FNGRACVVAFASPQTLKQMGASY++K QGQ Q Q    R  NEG G+GG +NYQ
Sbjct:  165 TAGPTGVTQMPTNQISIKVNANRPMFNENQIRPPVENGSTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFHDPAAATACKEGMDGYLFNGRACVVAFASPQTLKQMGASYLSKSQGQTQSQQPGRRPMNEGVGRGGGVNYQ 323
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: V4VFX3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030915mg PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.991e-69
Identity = 123/157 (78.34%), Postives = 137/157 (87.26%), Query Frame = 1 
Query:    7 GPQGASQVPPNQMG--MNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXX-XXXXXXXXXXNEGFGKGGNMNYQ 468
            GPQGA  +P NQMG  +NVN  M+NENQ+RPP+ENG TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEF+D+A+AAACK+GMNG++FNGR CVVAFASPQTLKQMGASYMNK+QGQ        R  N+G G+GGNMNYQ
Sbjct:  197 GPQGA-LIPANQMGVNINVNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQTQGRRPMNDGGGRGGNMNYQ 352
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: CPSF6_MOUSE (Cleavage and polyadenylation specificity factor subunit 6 OS=Mus musculus GN=Cpsf6 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.410e-8
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:  118 LFVGELHWWTTDAELESVLSQYG--RVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQM 366
            L++G L WWTTD +L   +   G   + EIKFF+ RA+G+SKG+  V     AS+    + +     +G++ VV   + Q L Q 
Sbjct:   83 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQSPVVTPCNKQFLSQF 167
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBMX_PANTR (RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.627e-8
Identity = 28/79 (35.44%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  109 PTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFAS 345
            P  LF+G L+  T +  LE+V  +YGR+ E+    +R + KS+G+  V F   A A      MNG   +G+A  V  A+
Sbjct:    7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQAT 85
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBMX_HUMAN (RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 56.225 bits (134), Expect = 1.627e-8
Identity = 28/79 (35.44%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  109 PTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFAS 345
            P  LF+G L+  T +  LE+V  +YGR+ E+    +R + KS+G+  V F   A A      MNG   +G+A  V  A+
Sbjct:    7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQAT 85
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBMX_MACFA (RNA-binding motif protein, X chromosome OS=Macaca fascicularis GN=RBMX PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.672e-8
Identity = 28/79 (35.44%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  109 PTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFAS 345
            P  LF+G L+  T +  LE+V  +YGR+ E+    +R + KS+G+  V F   A A      MNG   +G+A  V  A+
Sbjct:    7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQAT 85
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBMX_MOUSE (RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.735e-8
Identity = 28/79 (35.44%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  109 PTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFAS 345
            P  LF+G L+  T +  LE+V  +YGR+ E+    +R + KS+G+  V F   A A      MNG   +G+A  V  A+
Sbjct:    7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQAT 85
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PGJ9_GOSAR5.414e-95100.00Cleavage and polyadenylation specificity factor su... [more]
A0A0D2W0D0_GOSRA7.377e-95100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E6X2_THECC1.230e-8891.67RNA-binding family protein isoform 1 OS=Theobroma ... [more]
A0A061E722_THECC6.114e-8689.10RNA-binding family protein isoform 6 OS=Theobroma ... [more]
A0A061E6X5_THECC9.766e-8689.10RNA-binding family protein isoform 5 (Fragment) OS... [more]
A0A061E718_THECC1.030e-8589.10RNA-binding family protein isoform 1 OS=Theobroma ... [more]
A0A061EER0_THECC1.555e-8589.10RNA-binding family protein isoform 4 OS=Theobroma ... [more]
F6GVJ6_VITVI7.352e-7475.95Putative uncharacterized protein OS=Vitis vinifera... [more]
M5XN02_PRUPE9.177e-7376.10Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
V4VFX3_9ROSI3.991e-6978.34Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CPSF6_MOUSE1.410e-835.29Cleavage and polyadenylation specificity factor su... [more]
RBMX_PANTR1.627e-835.44RNA-binding motif protein, X chromosome OS=Pan tro... [more]
RBMX_HUMAN1.627e-835.44RNA-binding motif protein, X chromosome OS=Homo sa... [more]
RBMX_MACFA1.672e-835.44RNA-binding motif protein, X chromosome OS=Macaca ... [more]
RBMX_MOUSE1.735e-835.44RNA-binding motif protein, X chromosome OS=Mus mus... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 25..98
e-value: 1.3E-19
score: 81.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 26..94
e-value: 3.3E-17
score: 61.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 24..102
score: 14.368
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 11..137
e-value: 1.6E-25
score: 89.0
IPR012677Nucleotide-binding alpha-beta plait domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 8..130
NoneNo IPR availablePANTHERPTHR24012:SF425F3F19.21 PROTEINcoord: 23..107
coord: 129..157
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 23..107
coord: 129..157

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013038 ID=g.arboreum_cottongen_reftransV1_0013038; Name=g.arboreum_cottongen_reftransV1_0013038; organism=Gossypium arboreum; type=contig; length=513bp
ACTGGTGGTCCTCAAGGAGCTTCACAGGTTCCGCCTAATCAAATGGGTAT
GAATGTAAATCATCCTATGATGAATGAAAATCAGGTTCGGCCACCTATAG
AGAATGGTCCAACAATGCTGTTTGTTGGTGAGTTACATTGGTGGACAACT
GATGCAGAGCTTGAGAGCGTTTTATCTCAATATGGAAGGGTGAAGGAGAT
TAAGTTCTTTGATGAGAGAGCTAGTGGCAAATCCAAAGGCTATTGTCAAG
TTGAGTTCTATGATTCAGCATCTGCAGCTGCATGTAAAGAGGGAATGAAT
GGTTATATGTTCAATGGTCGAGCTTGCGTTGTGGCTTTTGCTTCACCACA
AACATTGAAGCAGATGGGAGCGTCTTATATGAACAAAGACCAAGGCCAGC
CTCAAGTACAGCCTCAAGGAAGGAGGCCAAATGAAGGTTTTGGGAAAGGT
GGTAATATGAATTACCAAGGTGGGGATGCAGGTAGGAACTATGGAAGGGG
TGGCTGGGGACGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding