g.arboreum_cottongen_reftransV1_0013038, g.arboreum_cottongen_reftransV1_0013038 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0013038
Unique Name	g.arboreum_cottongen_reftransV1_0013038
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	513

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr12	chromosome	g.arboreum_cottongen_reftransV1_0013038:1..513 . Chr12:121744077..121744589 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A0B0PGJ9_GOSAR (Cleavage and polyadenylation specificity factor subunit OS=Gossypium arboreum GN=F383_09226 PE=4 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.414e-95
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ
Sbjct:  190 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ 345

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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A0D2W0D0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G173800 PE=4 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.377e-95
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ
Sbjct:  190 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ 345

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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E6X2_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_010663 PE=4 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.230e-88
Identity = 143/156 (91.67%), Postives = 150/156 (96.15%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQGA  VPPNQMG+NVNHPM++ENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYD ASAAACKEGM+GYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPN+G G+GGNMNYQ
Sbjct:  194 TGGPQGAPHVPPNQMGLNVNHPMISENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDPASAAACKEGMDGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNDGLGRGGNMNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E722_THECC (RNA-binding family protein isoform 6 OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 6.114e-86
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E6X5_THECC (RNA-binding family protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 9.766e-86
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E718_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.030e-85
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061EER0_THECC (RNA-binding family protein isoform 4 OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.555e-85
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: F6GVJ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0137g00270 PE=4 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 7.352e-74
Identity = 120/158 (75.95%), Postives = 132/158 (83.54%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVN--HPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGP+   Q+  NQMGMNVN   PM+NENQ+RP ++NG TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYD+++AAACKEGMNGY+FNGRACVVAFASPQTLKQMGASYMNK           R  N+G G+GG MN Q
Sbjct:  190 TGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGASYMNK-TQAQSQSQGRRPMNDGVGRGGGMNMQ 346

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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: M5XN02_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002814mg PE=4 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 9.177e-73
Identity = 121/159 (76.10%), Postives = 135/159 (84.91%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGM--NVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXX-XXXXXNEGFGKGGNMNYQ 468
            T GP G +Q+P NQ+ +  N N PM NENQ+RPP+ENG TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEF+D A+A ACKEGM+GY+FNGRACVVAFASPQTLKQMGASY++K QGQ Q Q    R  NEG G+GG +NYQ
Sbjct:  165 TAGPTGVTQMPTNQISIKVNANRPMFNENQIRPPVENGSTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFHDPAAATACKEGMDGYLFNGRACVVAFASPQTLKQMGASYLSKSQGQTQSQQPGRRPMNEGVGRGGGVNYQ 323

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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: V4VFX3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030915mg PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.991e-69
Identity = 123/157 (78.34%), Postives = 137/157 (87.26%), Query Frame = 1

Query:    7 GPQGASQVPPNQMG--MNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXX-XXXXXXXXXXNEGFGKGGNMNYQ 468
            GPQGA  +P NQMG  +NVN  M+NENQ+RPP+ENG TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEF+D+A+AAACK+GMNG++FNGR CVVAFASPQTLKQMGASYMNK+QGQ        R  N+G G+GGNMNYQ
Sbjct:  197 GPQGA-LIPANQMGVNINVNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQTQGRRPMNDGGGRGGNMNYQ 352

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: CPSF7_HUMAN (Cleavage and polyadenylation specificity factor subunit 7 OS=Homo sapiens GN=CPSF7 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.227e-9
Identity = 34/94 (36.17%), Postives = 47/94 (50.00%), Query Frame = 1

Query:   97 IENGPTMLFVGELHWWTTDAELESVLSQYG--RVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGA 372
            + N    ++VG   WWTTD +L  V+   G   V E+KF + RA+G+SKGY +V      S     E + G + NG    V  A+ Q L Q  A
Sbjct:   77 LRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEA 170

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: CPSF7_RAT (Cleavage and polyadenylation specificity factor subunit 7 OS=Rattus norvegicus GN=Cpsf7 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.938e-9
Identity = 33/87 (37.93%), Postives = 45/87 (51.72%), Query Frame = 1

Query:  118 LFVGELHWWTTDAELESVLSQYG--RVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGA 372
            ++VG   WWTTD +L  V+   G   V E+KF + RA+G+SKGY +V      S     E + G + NG    V  A+ Q L Q  A
Sbjct:   84 VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEA 170

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: CPSF7_MOUSE (Cleavage and polyadenylation specificity factor subunit 7 OS=Mus musculus GN=Cpsf7 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 2.022e-9
Identity = 33/87 (37.93%), Postives = 45/87 (51.72%), Query Frame = 1

Query:  118 LFVGELHWWTTDAELESVLSQYG--RVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGA 372
            ++VG   WWTTD +L  V+   G   V E+KF + RA+G+SKGY +V      S     E + G + NG    V  A+ Q L Q  A
Sbjct:   84 VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEA 170

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBMX_BOVIN (RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.837e-9
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 1

Query:  109 PTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFAS 345
            P  LF+G L+  T +  LE+   +YGR+ E+    +R + KS+G+  + F   A A A    MNG   +G+A  VA A+
Sbjct:    7 PGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQAT 85

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBG8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.743e-9
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T D +L+   SQ+G V + K  ++R SG+S+G+  V F D  +     E MNG   +GR   V
Sbjct:    9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RMXL1_MOUSE (RNA binding motif protein, X-linked-like-1 OS=Mus musculus GN=Rbmxl1 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.183e-9
Identity = 29/79 (36.71%), Postives = 42/79 (53.16%), Query Frame = 1

Query:  109 PTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFAS 345
            P  LF+G L+  T +  LE+V  +YGR+ EI    +R + KS+G+  V F   A A      MNG   +G+A  V  A+
Sbjct:    7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQAT 85

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RMXL1_RAT (RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus GN=Rbmxl1 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 8.809e-9
Identity = 29/79 (36.71%), Postives = 42/79 (53.16%), Query Frame = 1

Query:  109 PTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFAS 345
            P  LF+G L+  T +  LE+V  +YGR+ EI    +R + KS+G+  V F   A A      MNG   +G+A  V  A+
Sbjct:    7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQAT 85

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RMXRL_RAT (RNA-binding motif protein, X chromosome retrogene-like OS=Rattus norvegicus GN=Rbmxrtl PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 9.482e-9
Identity = 29/79 (36.71%), Postives = 42/79 (53.16%), Query Frame = 1

Query:  109 PTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFAS 345
            P  LF+G L+  T +  LE+V  +YGR+ EI    +R + KS+G+  V F   A A      MNG   +G+A  V  A+
Sbjct:    7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQAT 85

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RMXL2_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 56.6102 bits (135), Expect = 1.260e-8
Identity = 29/79 (36.71%), Postives = 43/79 (54.43%), Query Frame = 1

Query:  109 PTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFAS 345
            P  LF+G L+  T +  LE+   +YGR+ E+    +R + KS+G+  V F   A A A    MNG   +G+A  VA A+
Sbjct:    7 PGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQAT 85

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RMXL1_HUMAN (RNA binding motif protein, X-linked-like-1 OS=Homo sapiens GN=RBMXL1 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.314e-8
Identity = 28/79 (35.44%), Postives = 42/79 (53.16%), Query Frame = 1

Query:  109 PTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFAS 345
            P  LF+G L+  T +  LE+V  +YGR+ E+    +R + KS+G+  V F   A A      MNG   +G+A  V  A+
Sbjct:    7 PGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQAT 85

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PGJ9_GOSAR	5.414e-95	100.00	Cleavage and polyadenylation specificity factor su...	[more]
A0A0D2W0D0_GOSRA	7.377e-95	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061E6X2_THECC	1.230e-88	91.67	RNA-binding family protein isoform 1 OS=Theobroma ...	[more]
A0A061E722_THECC	6.114e-86	89.10	RNA-binding family protein isoform 6 OS=Theobroma ...	[more]
A0A061E6X5_THECC	9.766e-86	89.10	RNA-binding family protein isoform 5 (Fragment) OS...	[more]
A0A061E718_THECC	1.030e-85	89.10	RNA-binding family protein isoform 1 OS=Theobroma ...	[more]
A0A061EER0_THECC	1.555e-85	89.10	RNA-binding family protein isoform 4 OS=Theobroma ...	[more]
F6GVJ6_VITVI	7.352e-74	75.95	Putative uncharacterized protein OS=Vitis vinifera...	[more]
M5XN02_PRUPE	9.177e-73	76.10	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
V4VFX3_9ROSI	3.991e-69	78.34	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
CPSF7_HUMAN	1.227e-9	36.17	Cleavage and polyadenylation specificity factor su...	[more]
CPSF7_RAT	1.938e-9	37.93	Cleavage and polyadenylation specificity factor su...	[more]
CPSF7_MOUSE	2.022e-9	37.93	Cleavage and polyadenylation specificity factor su...	[more]
RBMX_BOVIN	4.837e-9	35.44	RNA-binding motif protein, X chromosome OS=Bos tau...	[more]
RBG8_ARATH	6.743e-9	39.44	Glycine-rich RNA-binding protein 8 OS=Arabidopsis ...	[more]
RMXL1_MOUSE	8.183e-9	36.71	RNA binding motif protein, X-linked-like-1 OS=Mus ...	[more]
RMXL1_RAT	8.809e-9	36.71	RNA binding motif protein, X-linked-like-1 OS=Ratt...	[more]
RMXRL_RAT	9.482e-9	36.71	RNA-binding motif protein, X chromosome retrogene-...	[more]
RMXL2_HUMAN	1.260e-8	36.71	RNA-binding motif protein, X-linked-like-2 OS=Homo...	[more]
RMXL1_HUMAN	1.314e-8	35.44	RNA binding motif protein, X-linked-like-1 OS=Homo...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 25..98 e-value: 1.3E-19 score: 81.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 26..94 e-value: 3.3E-17 score: 61.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 24..102 score: 14.368
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 11..137 e-value: 1.6E-25 score: 89.0
IPR012677	Nucleotide-binding alpha-beta plait domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..130
None	No IPR available	PANTHER	PTHR24012:SF425	F3F19.21 PROTEIN	coord: 23..107 coord: 129..157
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 23..107 coord: 129..157

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0013038 ID=g.arboreum_cottongen_reftransV1_0013038; Name=g.arboreum_cottongen_reftransV1_0013038; organism=Gossypium arboreum; type=contig; length=513bp
ACTGGTGGTCCTCAAGGAGCTTCACAGGTTCCGCCTAATCAAATGGGTAT
GAATGTAAATCATCCTATGATGAATGAAAATCAGGTTCGGCCACCTATAG
AGAATGGTCCAACAATGCTGTTTGTTGGTGAGTTACATTGGTGGACAACT
GATGCAGAGCTTGAGAGCGTTTTATCTCAATATGGAAGGGTGAAGGAGAT
TAAGTTCTTTGATGAGAGAGCTAGTGGCAAATCCAAAGGCTATTGTCAAG
TTGAGTTCTATGATTCAGCATCTGCAGCTGCATGTAAAGAGGGAATGAAT
GGTTATATGTTCAATGGTCGAGCTTGCGTTGTGGCTTTTGCTTCACCACA
AACATTGAAGCAGATGGGAGCGTCTTATATGAACAAAGACCAAGGCCAGC
CTCAAGTACAGCCTCAAGGAAGGAGGCCAAATGAAGGTTTTGGGAAAGGT
GGTAATATGAATTACCAAGGTGGGGATGCAGGTAGGAACTATGGAAGGGG
TGGCTGGGGACGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Search form

g.arboreum_cottongen_reftransV1_0013038, g.arboreum_cottongen_reftransV1_0013038 (contig) Gossypium arboreum

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