g.arboreum_cottongen_reftransV1_0005152, g.arboreum_cottongen_reftransV1_0005152 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A0B2R494_GLYSO (Zinc finger CCHC domain-containing protein 8 OS=Glycine soja GN=glysoja_040401 PE=4 SV=1) HSP 1 Score: 365.54 bits (937), Expect = 8.963e-117 Identity = 201/335 (60.00%), Postives = 254/335 (75.82%), Query Frame = -2 Query: 514 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPD-EDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLW---APXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRY-FSDYEDEGVPGV--DSRVSSSYPPRYGNYDS 1494 RAS+QKL+ELLQKWS W A+H SS + +E+ ESGE+T+FPAL VG +K SAVSFW+++Q RN + +FIPL N VPLYDRG+A+GLTSAD SSN++GGLEI D A+RCFNCGSY+HSL++CP+PRDN+AVNNAR + KS+RNQ+++SR+ TRYYQNS GKYD L+PG L TR+LLGL E DPPPWLNRMRE+GYPPGYL D ED+PSGITI+ D+E+ + QEDGEI E +P+ K TV+FPGINAPIP +ADE+LW A SS+ ++ S HR N+S++ GSRG R + D DEG PG S S+ PR+G +DS Sbjct: 100 RASRQKLQELLQKWSAWHAKHVSSSSDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRNDKNKDFIPLADNTVPLYDRGYALGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNIAVNNARDK-LKSRRNQNSSSRHPTRYYQNSPAGKYDGLRPGSLDDATRKLLGLRELDPPPWLNRMRELGYPPGYLDVDNEDQPSGITIFTDSEIAD-QEDGEIME-ADASKPKRKKTVKFPGINAPIPEKADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDEGPPGDPGHSSFMFSFHPRFGGHDS 431
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A068U1K4_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00039762001 PE=4 SV=1) HSP 1 Score: 365.54 bits (937), Expect = 2.073e-116 Identity = 181/267 (67.79%), Postives = 216/267 (80.90%), Query Frame = -2 Query: 700 RASKQKLEELLQKWSEWQAEHGSSLQEN-ELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPD-EDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWA 1494 R SK+KLEELLQ+WS+W A+H SS +E+ ++ ESGE TYFPAL+VG DK SAVSFW++++ R + E IP DGN VP+YDRG+++ LT+ D SSNL G LE+ E SRCFNCGSY+H+LK CPKPRDN+AVNNARKQH KS+RNQ+ +SRN TRYYQNS GGKYD LKPG L +ETRQLLGLGEFDPPPWLNRMREIGYPPGYL PD ED+PSGITI+ D E E E+GEI + PEP KM++EFPG+NAPIP +ADE WA Sbjct: 156 RDSKRKLEELLQQWSQWHAQHCSSSKESSQVLESGEDTYFPALQVGVDKHSAVSFWMENETRCRQNKEVIPFDGNSVPVYDRGYSLALTAMDGSSNL-GVLEVV-EGSRCFNCGSYNHALKDCPKPRDNIAVNNARKQH-KSRRNQNPSSRNPTRYYQNSPGGKYDGLKPGTLDSETRQLLGLGEFDPPPWLNRMREIGYPPGYLDPDNEDQPSGITIFGDEENGEDTEEGEILDS-SHPEPARKMSIEFPGVNAPIPQKADEMRWA 418
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: K4BGB8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g045060.2 PE=4 SV=1) HSP 1 Score: 363.614 bits (932), Expect = 8.243e-116 Identity = 221/378 (58.47%), Postives = 275/378 (72.75%), Query Frame = -2 Query: 379 RASKQKLEELLQKWSEWQAEHGSSLQEN-ELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXX--XXXXXXXXXRYFSDYEDEGVPGVDSRVS---SSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGS 1494 R S++ LE LLQ+WSEW A+H SS Q++ EL ESGE+TYFPAL VG +K SAV++W+D Q N + EFIPLDGN +PLYDRG++ LT+ D+S+N+E G+E+ D +SRCFNCGSY H+LK+CPKPRDN AVN+ARKQH KS+RNQSA+SRN TRYYQ+S GKYD L+PG L +ETR+LLGLGE DPPPW+NRMR++GYPPGYL DED+PSGITI+AD + E E+GEI + PR KMTV+FPG+NAPIP ADE+ W + S S SRS SH+R NH+ + E+R D+ED+G PG D R S S+Y RYG YD Y +SPRD PRS + GRS ER RR+P+V E H YGS Sbjct: 156 RESRKMLEGLLQQWSEWHAKHCSSAQDSRELLESGEETYFPALHVGLEKPSAVTYWVDKQASN-NKSEFIPLDGNSIPLYDRGYSFALTATDSSTNVERGIEMVD-SSRCFNCGSYGHALKECPKPRDNAAVNSARKQH-KSRRNQSASSRNPTRYYQDSPRGKYDGLRPGALDSETRKLLGLGELDPPPWINRMRQMGYPPGYLEDDEDQPSGITIFADEKNKEETEEGEILDKSLPNLPR-KMTVDFPGVNAPIPEHADERRWE-AAPSSSRYSRSHSHNRYNHAQDYVNRGHYHEQRRSRDFEDDGPPGCDPRTSPLLSTYSYRYGAYDPRYSSHSPRDSASMPRSHSFGRSLSERERRNPIVKEGSYHHSFYGS 528
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: W9RG55_9ROSA (Zinc finger CCHC domain-containing protein 8 OS=Morus notabilis GN=L484_009142 PE=4 SV=1) HSP 1 Score: 367.081 bits (941), Expect = 1.322e-115 Identity = 208/338 (61.54%), Postives = 243/338 (71.89%), Query Frame = -2 Query: 508 RASKQKLEELLQKWSEWQAEHGSSLQEN-ELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPD-EDEPSGITIYADAEVDEG-QEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXX--XXXXXXXXXRYFSDYEDEGVPGVDSRVS---SSYPPRYG-NYDSPY 1494 R+SK KLEEL+Q+WSEWQA+H SS Q+ E ESGE+TYF AL +G +K S+V FWID Q + E PLD N VPLYDRGFA+GLTS SSN+EGGLEI ++A RCFNCGSY+H+LK+CPKPRDNVAVNNARKQ KSKRNQ+ +SRN TRYYQNS GKYD LKPG L ETR+LLGL E DPPPWL RMREIGYPPGYL PD ED+PSGITIYAD E ++ QEDGEI E + PR KMTVEFPGIN PIP AD ++W + +S R NHSS S E R+ ++ D+G PGVD S S+Y PRYG +Y+S Y Sbjct: 243 RSSKYKLEELMQQWSEWQAQHHSSSQDPPEALESGEETYFSALHIGLEKASSVPFWIDKQTGKQQNNELSPLDCNSVPLYDRGFALGLTSDGGSSNVEGGLEIVEDAVRCFNCGSYNHALKECPKPRDNVAVNNARKQ-LKSKRNQNPSSRNPTRYYQNSPAGKYDGLKPGTLDPETRKLLGLRELDPPPWLGRMREIGYPPGYLDPDEEDQPSGITIYADGEGNKAEQEDGEIIEADNREPPR-KMTVEFPGINGPIPENADRRIWTAAPASSDIYRNRLL-RRSNHSSEPTGRSHHREERWSREFRDDGPPGVDQGFSPAMSTYLPRYGSSYESSY 577
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: V7BNB8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G009500g PE=4 SV=1) HSP 1 Score: 355.91 bits (912), Expect = 8.976e-114 Identity = 174/268 (64.93%), Postives = 215/268 (80.22%), Query Frame = -2 Query: 700 RASKQKLEELLQKWSEWQAEHG-SSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEM-VQQPEPRMKMTVEFPGINAPIPVEADEKLWA 1494 RAS+QKL+ELL++WSEW A+H SS ++E+ ESGE+T+FPAL VG +K SAVSFW+++Q RN + +F PL + VPLYDRG+ +GLTSAD SSN++GGLEI D+A+RCFNCGSY+HSL++C +PRDN AV+NARKQH KS+RNQ+++SRN TRYYQNS GKY L+PG L TRQLLGL E DPPPWLNRMREIGYPPGYL DED+PSGI IY D E+ + QEDGEI E +P+ +MTV+FPGINAPIP ADE+LW Sbjct: 44 RASRQKLQELLRQWSEWHAKHAMSSNVDSEVMESGEETFFPALHVGLEKTSAVSFWMENQTRNDKNTDFNPLADDSVPLYDRGYTLGLTSADGSSNVDGGLEIIDDAARCFNCGSYNHSLRECQRPRDNTAVSNARKQH-KSRRNQNSSSRNPTRYYQNSPAGKYAGLRPGALDDATRQLLGLEELDPPPWLNRMREIGYPPGYLDVDDEDQPSGIMIYTDREIAD-QEDGEIMETESDSSKPKRRMTVKFPGINAPIPDNADERLWG 309
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_XENLA (Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis GN=zcchc8 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 4.347e-21 Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = -2 Query: 727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEI----AEMVQQPEPRMKMTVEFPGINAPIP 1269 +P Y + F + S D G EI+ +A R CFNCGS H ++ CPKPRD +N RK+ + A ++N RY+ ++ KPGV+ E ++ LG+ + + PP++ RMRE+GYPPG+L E E SG+++Y D + DGEI E + + V +PG N P Sbjct: 186 IPKYQQVFTQ-IVSLD-------GQEIQVKAKRPKPCCFNCGSEEHQMRDCPKPRDQAHINMKRKEFLDA--CGEAGNQNQQRYHAEEVEERFGKYKPGVISEELQEALGIMDKNLPPFIYRMRELGYPPGWLKEAELENSGLSLY-DGKERLDASDGEIEDRDTEAKKHVSYDVSKLVNYPGFNISAP 363
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_CHICK (Zinc finger CCHC domain-containing protein 8 OS=Gallus gallus GN=ZCCHC8 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.350e-18 Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2 Query: 727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPR---MKMTVEFPGINAPIP 1269 +P Y + F+ L S D E ++ K S CFNCGS H +K CPKPR+ ++ RK+ ++ +++ RY+ ++ KPGV+ E + LG+ PP++ RMR++GYPPG+L E E SG+ +Y + +E +++G + QP+ + + +PG N P Sbjct: 99 IPKYQQVFSQIL-SLDGQ---EIQVKPKRPKSHCFNCGSEEHQIKDCPKPRNAARISEKRKEFMEA-YGEASNQNFQQRYHAEEVEERFGKFKPGVISGELQDALGVTAKSLPPFIYRMRQLGYPPGWLKEAEMEHSGLALYDGKDDNETEDEGYL-----QPKHVTYDVSKLINYPGFNISTP 272
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_PONAB (Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii GN=ZCCHC8 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.524e-18 Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = -2 Query: 727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRN-ATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200 G EI+ +A R CFNCGS H +K CP PR+ ++ RK++ + A ++N RY+ ++ KPGV+ E + LG+ + PP++ RMR++GYPPG+L E E SG+ +Y + +G+ E+ E+ Q ++ V +PG N P Sbjct: 213 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDA--CGEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDGE--TEVGEIQQNKSVTYDLSKLVNYPGFNISTP 373
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_HUMAN (Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens GN=ZCCHC8 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 6.784e-18 Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = -2 Query: 727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200 G EI+ +A R CFNCGS H +K CP PR+ ++ RK++ + ++ RY+ ++ KPGV+ E + LG+ + PP++ RMR++GYPPG+L E E SG+ +Y + +G + E+ E+ Q ++ V +PG N P Sbjct: 215 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDAC-GEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDG--ETEVGEIQQNKSVTYDLSKLVNYPGFNISTP 375
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_MOUSE (Zinc finger CCHC domain-containing protein 8 OS=Mus musculus GN=Zcchc8 PE=2 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 9.519e-18 Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2 Query: 727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-ADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIP 1200 G E++ +A R CFNCGS H +K+CP PR+ ++ RK++ + S S RY+ ++ KPGV+ E + LG+ + PP++ RMR++GYPPG+L E E SG+ +Y + + D E GEI + + V +PG N P Sbjct: 218 GQEMQVKAKRPKPHCFNCGSEEHQMKECPMPRNAARISEKRKEYMDACGEASGQSFQ-QRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGNDDADGETETGEIQN--KNVTYDLSKLVNYPGFNISTP 377
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_DROME (Zinc finger CCHC domain-containing protein 8 homolog OS=Drosophila melanogaster GN=CG4622 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.478e-13 Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = -2 Query: 736 SRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-AD-AEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINA 1176 S CFNCG HSL+ C KPR+N + ARK+ + RY+ +++ ++ ++PG + +TR +G P RMR +GYPP +L + + SGI ++ AD +EV + E+ +E + + VE+PG N Sbjct: 183 SSCFNCGDTEHSLRDCTKPRNNSRITRARKK----------MTSRTERYHVDTE-QRFGHIRPGKISTKTRHAMGYSRGQLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESETFKYD---VNKIVEYPGFNV 317 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005152 ID=g.arboreum_cottongen_reftransV1_0005152; Name=g.arboreum_cottongen_reftransV1_0005152; organism=Gossypium arboreum; type=contig; length=1495bpback to top |