g.arboreum_cottongen_reftransV1_0005152, g.arboreum_cottongen_reftransV1_0005152 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005152
Unique Nameg.arboreum_cottongen_reftransV1_0005152
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1495
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
Chr13chromosomeg.arboreum_cottongen_reftransV1_0005152:1..1494 .
Chr13:101631934..101636199 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A0B2R494_GLYSO (Zinc finger CCHC domain-containing protein 8 OS=Glycine soja GN=glysoja_040401 PE=4 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 8.963e-117
Identity = 201/335 (60.00%), Postives = 254/335 (75.82%), Query Frame = -2
Query:  514 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPD-EDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLW---APXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRY-FSDYEDEGVPGV--DSRVSSSYPPRYGNYDS 1494
            RAS+QKL+ELLQKWS W A+H SS  + +E+ ESGE+T+FPAL VG +K SAVSFW+++Q RN  + +FIPL  N VPLYDRG+A+GLTSAD SSN++GGLEI D A+RCFNCGSY+HSL++CP+PRDN+AVNNAR +  KS+RNQ+++SR+ TRYYQNS  GKYD L+PG L   TR+LLGL E DPPPWLNRMRE+GYPPGYL  D ED+PSGITI+ D+E+ + QEDGEI E     +P+ K TV+FPGINAPIP +ADE+LW   A   SS+  ++ S   HR N+S++ GSRG  R +   D  DEG PG    S    S+ PR+G +DS
Sbjct:  100 RASRQKLQELLQKWSAWHAKHVSSSSDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRNDKNKDFIPLADNTVPLYDRGYALGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNIAVNNARDK-LKSRRNQNSSSRHPTRYYQNSPAGKYDGLRPGSLDDATRKLLGLRELDPPPWLNRMRELGYPPGYLDVDNEDQPSGITIFTDSEIAD-QEDGEIME-ADASKPKRKKTVKFPGINAPIPEKADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDEGPPGDPGHSSFMFSFHPRFGGHDS 431          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A068U1K4_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00039762001 PE=4 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 2.073e-116
Identity = 181/267 (67.79%), Postives = 216/267 (80.90%), Query Frame = -2
Query:  700 RASKQKLEELLQKWSEWQAEHGSSLQEN-ELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPD-EDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWA 1494
            R SK+KLEELLQ+WS+W A+H SS +E+ ++ ESGE TYFPAL+VG DK SAVSFW++++ R   + E IP DGN VP+YDRG+++ LT+ D SSNL G LE+  E SRCFNCGSY+H+LK CPKPRDN+AVNNARKQH KS+RNQ+ +SRN TRYYQNS GGKYD LKPG L +ETRQLLGLGEFDPPPWLNRMREIGYPPGYL PD ED+PSGITI+ D E  E  E+GEI +    PEP  KM++EFPG+NAPIP +ADE  WA
Sbjct:  156 RDSKRKLEELLQQWSQWHAQHCSSSKESSQVLESGEDTYFPALQVGVDKHSAVSFWMENETRCRQNKEVIPFDGNSVPVYDRGYSLALTAMDGSSNL-GVLEVV-EGSRCFNCGSYNHALKDCPKPRDNIAVNNARKQH-KSRRNQNPSSRNPTRYYQNSPGGKYDGLKPGTLDSETRQLLGLGEFDPPPWLNRMREIGYPPGYLDPDNEDQPSGITIFGDEENGEDTEEGEILDS-SHPEPARKMSIEFPGVNAPIPQKADEMRWA 418          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: K4BGB8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g045060.2 PE=4 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 8.243e-116
Identity = 221/378 (58.47%), Postives = 275/378 (72.75%), Query Frame = -2
Query:  379 RASKQKLEELLQKWSEWQAEHGSSLQEN-ELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXX--XXXXXXXXXRYFSDYEDEGVPGVDSRVS---SSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGS 1494
            R S++ LE LLQ+WSEW A+H SS Q++ EL ESGE+TYFPAL VG +K SAV++W+D Q  N +  EFIPLDGN +PLYDRG++  LT+ D+S+N+E G+E+ D +SRCFNCGSY H+LK+CPKPRDN AVN+ARKQH KS+RNQSA+SRN TRYYQ+S  GKYD L+PG L +ETR+LLGLGE DPPPW+NRMR++GYPPGYL  DED+PSGITI+AD +  E  E+GEI +      PR KMTV+FPG+NAPIP  ADE+ W  +  S S  SRS SH+R NH+    +     E+R   D+ED+G PG D R S   S+Y  RYG YD  Y  +SPRD    PRS + GRS  ER RR+P+V E    H  YGS
Sbjct:  156 RESRKMLEGLLQQWSEWHAKHCSSAQDSRELLESGEETYFPALHVGLEKPSAVTYWVDKQASN-NKSEFIPLDGNSIPLYDRGYSFALTATDSSTNVERGIEMVD-SSRCFNCGSYGHALKECPKPRDNAAVNSARKQH-KSRRNQSASSRNPTRYYQDSPRGKYDGLRPGALDSETRKLLGLGELDPPPWINRMRQMGYPPGYLEDDEDQPSGITIFADEKNKEETEEGEILDKSLPNLPR-KMTVDFPGVNAPIPEHADERRWE-AAPSSSRYSRSHSHNRYNHAQDYVNRGHYHEQRRSRDFEDDGPPGCDPRTSPLLSTYSYRYGAYDPRYSSHSPRDSASMPRSHSFGRSLSERERRNPIVKEGSYHHSFYGS 528          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: W9RG55_9ROSA (Zinc finger CCHC domain-containing protein 8 OS=Morus notabilis GN=L484_009142 PE=4 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 1.322e-115
Identity = 208/338 (61.54%), Postives = 243/338 (71.89%), Query Frame = -2
Query:  508 RASKQKLEELLQKWSEWQAEHGSSLQEN-ELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPD-EDEPSGITIYADAEVDEG-QEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXX--XXXXXXXXXRYFSDYEDEGVPGVDSRVS---SSYPPRYG-NYDSPY 1494
            R+SK KLEEL+Q+WSEWQA+H SS Q+  E  ESGE+TYF AL +G +K S+V FWID Q     + E  PLD N VPLYDRGFA+GLTS   SSN+EGGLEI ++A RCFNCGSY+H+LK+CPKPRDNVAVNNARKQ  KSKRNQ+ +SRN TRYYQNS  GKYD LKPG L  ETR+LLGL E DPPPWL RMREIGYPPGYL PD ED+PSGITIYAD E ++  QEDGEI E   +  PR KMTVEFPGIN PIP  AD ++W  + +S           R NHSS     S   E R+  ++ D+G PGVD   S   S+Y PRYG +Y+S Y
Sbjct:  243 RSSKYKLEELMQQWSEWQAQHHSSSQDPPEALESGEETYFSALHIGLEKASSVPFWIDKQTGKQQNNELSPLDCNSVPLYDRGFALGLTSDGGSSNVEGGLEIVEDAVRCFNCGSYNHALKECPKPRDNVAVNNARKQ-LKSKRNQNPSSRNPTRYYQNSPAGKYDGLKPGTLDPETRKLLGLRELDPPPWLGRMREIGYPPGYLDPDEEDQPSGITIYADGEGNKAEQEDGEIIEADNREPPR-KMTVEFPGINGPIPENADRRIWTAAPASSDIYRNRLL-RRSNHSSEPTGRSHHREERWSREFRDDGPPGVDQGFSPAMSTYLPRYGSSYESSY 577          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: V7BNB8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G009500g PE=4 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 8.976e-114
Identity = 174/268 (64.93%), Postives = 215/268 (80.22%), Query Frame = -2
Query:  700 RASKQKLEELLQKWSEWQAEHG-SSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEM-VQQPEPRMKMTVEFPGINAPIPVEADEKLWA 1494
            RAS+QKL+ELL++WSEW A+H  SS  ++E+ ESGE+T+FPAL VG +K SAVSFW+++Q RN  + +F PL  + VPLYDRG+ +GLTSAD SSN++GGLEI D+A+RCFNCGSY+HSL++C +PRDN AV+NARKQH KS+RNQ+++SRN TRYYQNS  GKY  L+PG L   TRQLLGL E DPPPWLNRMREIGYPPGYL   DED+PSGI IY D E+ + QEDGEI E      +P+ +MTV+FPGINAPIP  ADE+LW 
Sbjct:   44 RASRQKLQELLRQWSEWHAKHAMSSNVDSEVMESGEETFFPALHVGLEKTSAVSFWMENQTRNDKNTDFNPLADDSVPLYDRGYTLGLTSADGSSNVDGGLEIIDDAARCFNCGSYNHSLRECQRPRDNTAVSNARKQH-KSRRNQNSSSRNPTRYYQNSPAGKYAGLRPGALDDATRQLLGLEELDPPPWLNRMREIGYPPGYLDVDDEDQPSGIMIYTDREIAD-QEDGEIMETESDSSKPKRRMTVKFPGINAPIPDNADERLWG 309          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_XENLA (Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis GN=zcchc8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.347e-21
Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = -2
Query:  727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEI----AEMVQQPEPRMKMTVEFPGINAPIP 1269
            +P Y + F   + S D       G EI+ +A R    CFNCGS  H ++ CPKPRD   +N  RK+   +     A ++N  RY+      ++   KPGV+  E ++ LG+ + + PP++ RMRE+GYPPG+L   E E SG+++Y D +      DGEI     E  +     +   V +PG N   P
Sbjct:  186 IPKYQQVFTQ-IVSLD-------GQEIQVKAKRPKPCCFNCGSEEHQMRDCPKPRDQAHINMKRKEFLDA--CGEAGNQNQQRYHAEEVEERFGKYKPGVISEELQEALGIMDKNLPPFIYRMRELGYPPGWLKEAELENSGLSLY-DGKERLDASDGEIEDRDTEAKKHVSYDVSKLVNYPGFNISAP 363          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_CHICK (Zinc finger CCHC domain-containing protein 8 OS=Gallus gallus GN=ZCCHC8 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.350e-18
Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2
Query:  727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPR---MKMTVEFPGINAPIP 1269
            +P Y + F+  L S D     E  ++ K   S CFNCGS  H +K CPKPR+   ++  RK+  ++   +++      RY+      ++   KPGV+  E +  LG+     PP++ RMR++GYPPG+L   E E SG+ +Y   + +E +++G +     QP+     +   + +PG N   P
Sbjct:   99 IPKYQQVFSQIL-SLDGQ---EIQVKPKRPKSHCFNCGSEEHQIKDCPKPRNAARISEKRKEFMEA-YGEASNQNFQQRYHAEEVEERFGKFKPGVISGELQDALGVTAKSLPPFIYRMRQLGYPPGWLKEAEMEHSGLALYDGKDDNETEDEGYL-----QPKHVTYDVSKLINYPGFNISTP 272          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_PONAB (Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii GN=ZCCHC8 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.524e-18
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = -2
Query:  727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRN-ATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200
            G EI+ +A R    CFNCGS  H +K CP PR+   ++  RK++  +     A ++N   RY+      ++   KPGV+  E +  LG+ +   PP++ RMR++GYPPG+L   E E SG+ +Y   +  +G+   E+ E+ Q       ++  V +PG N   P
Sbjct:  213 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDA--CGEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDGE--TEVGEIQQNKSVTYDLSKLVNYPGFNISTP 373          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_HUMAN (Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens GN=ZCCHC8 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.784e-18
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = -2
Query:  727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200
            G EI+ +A R    CFNCGS  H +K CP PR+   ++  RK++  +   ++       RY+      ++   KPGV+  E +  LG+ +   PP++ RMR++GYPPG+L   E E SG+ +Y   +  +G  + E+ E+ Q       ++  V +PG N   P
Sbjct:  215 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDAC-GEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDG--ETEVGEIQQNKSVTYDLSKLVNYPGFNISTP 375          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_MOUSE (Zinc finger CCHC domain-containing protein 8 OS=Mus musculus GN=Zcchc8 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.519e-18
Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2
Query:  727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-ADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIP 1200
            G E++ +A R    CFNCGS  H +K+CP PR+   ++  RK++  +    S  S    RY+      ++   KPGV+  E +  LG+ +   PP++ RMR++GYPPG+L   E E SG+ +Y  + + D   E GEI    +     +   V +PG N   P
Sbjct:  218 GQEMQVKAKRPKPHCFNCGSEEHQMKECPMPRNAARISEKRKEYMDACGEASGQSFQ-QRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGNDDADGETETGEIQN--KNVTYDLSKLVNYPGFNISTP 377          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_DROME (Zinc finger CCHC domain-containing protein 8 homolog OS=Drosophila melanogaster GN=CG4622 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.478e-13
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = -2
Query:  736 SRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-AD-AEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINA 1176
            S CFNCG   HSL+ C KPR+N  +  ARK+           +    RY+ +++  ++  ++PG +  +TR  +G      P    RMR +GYPP +L   + + SGI ++ AD +EV +  E+   +E  +     +   VE+PG N 
Sbjct:  183 SSCFNCGDTEHSLRDCTKPRNNSRITRARKK----------MTSRTERYHVDTE-QRFGHIRPGKISTKTRHAMGYSRGQLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESETFKYD---VNKIVEYPGFNV 317          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2R494_GLYSO8.963e-11760.00Zinc finger CCHC domain-containing protein 8 OS=Gl... [more]
A0A068U1K4_COFCA2.073e-11667.79Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
K4BGB8_SOLLC8.243e-11658.47Uncharacterized protein OS=Solanum lycopersicum GN... [more]
W9RG55_9ROSA1.322e-11561.54Zinc finger CCHC domain-containing protein 8 OS=Mo... [more]
V7BNB8_PHAVU8.976e-11464.93Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ZCHC8_XENLA4.347e-2134.39Zinc finger CCHC domain-containing protein 8 OS=Xe... [more]
ZCHC8_CHICK1.350e-1830.98Zinc finger CCHC domain-containing protein 8 OS=Ga... [more]
ZCHC8_PONAB6.524e-1833.33Zinc finger CCHC domain-containing protein 8 OS=Po... [more]
ZCHC8_HUMAN6.784e-1832.32Zinc finger CCHC domain-containing protein 8 OS=Ho... [more]
ZCHC8_MOUSE9.519e-1833.74Zinc finger CCHC domain-containing protein 8 OS=Mu... [more]
ZCHC8_DROME1.478e-1331.54Zinc finger CCHC domain-containing protein 8 homol... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006568PSP, proline-richSMARTSM00581testneucoord: 154..206
e-value: 3.9E-11
score: 53.0
IPR006568PSP, proline-richPFAMPF04046PSPcoord: 158..196
e-value: 9.3E-14
score: 50.9
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 95..130
e-value: 1.1E-4
score: 21.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 98..114
score: 8.944
NoneNo IPR availablePANTHERPTHR13316ZINC FINGER, CCHC DOMAIN CONTAINING 8coord: 1..341

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005152 ID=g.arboreum_cottongen_reftransV1_0005152; Name=g.arboreum_cottongen_reftransV1_0005152; organism=Gossypium arboreum; type=contig; length=1495bp
GTAATATCCACCCGACTATCATCCCCAAGAAAGAAGAGATTATAATAAGA
GCAAGATGACTAATACATCTACGGTAAACAAACCATTTAAATTAATCTTA
GGCCTATCTATCTAAATCATTGTACAATGATCTTCCCACTTCACTGTTGC
TAAAACTATCAATGCATCCACCCTTTGTCTAGAAATCTTTACAAGTTATG
TGGGCCACAGGGGGTGCTAAACAATCATATCTACTGACAAAATTGAAAGT
TACAACAGTGCCATTCACCACCGGCTGTGATATCGATGGCTACTATACCG
AGATGAATAATCCAGGTAGCTGTTGTCCCATCTTTCATCGGTCTCATATT
CAAATCCATGAGCTCTTGGAGAATATCTTGAACCGTAGGAGCCATGACTA
CCAAAATCTTCATATACCAAGGGGCTCCTTCTACCCCTCTCATAATACGA
CCTTCCCGAGGTGGGGCTTCGTGGCCTTGGAATAGGATCTCTTGGACTGT
TAAAACCGTATGGTGAATCATAATTACCATACCTTGGGGGATAGGATGAA
CTAACTCTGGAGTCAACTCCGGGAACGCCTTCATCTTCATAATCACTAAA
ATACCTTCGTTCCAGCCCTCTGCTGCCAGATTCAGAAGAATGGTTCACTC
TATGGTGCGACTGTGACCTACTCTTGAATGATTCAGAACTTCGACTAGGA
GCCCAAAGTTTTTCATCTGCCTCAACAGGGATTGGTGCATTTATGCCTGG
AAATTCAACTGTCATTTTCATCCGTGGTTCAGGCTGCTGCACCATCTCAG
CAATTTCTCCATCTTCCTGTCCTTCATCGACTTCGGCATCAGCATATATT
GTAATTCCAGATGGCTCATCCTCGTCAGGGGCTAGATATCCCGGTGGGTA
CCCAATTTCTCGCATTCTATTAAGCCACGGTGGAGGGTCGAACTCCCCAA
GGCCTAATAGTTGTCGTGTTTCAGCACCAAGAACACCAGGCTTTAGATCA
TCATACTTTCCACCTTGAGAGTTCTGATAATAGCGAGTTGCATTGCGAGA
AGCAGCACTCTGATTACGTTTGGACTTTTGGTGTTGCTTTCGAGCATTGT
TGACAGCAACATTGTCACGAGGCTTTGGGCATTGCTTCAGGGAATGACTA
TAAGAACCACAGTTGAAACAACGGGAAGCCTCGTCTTTTATCTCCAGGCC
TCCTTCCAAATTACTTGAAGCATCTGCTGAAGTCAAACCCATTGCAAACC
CACGATCATAAAGTGGCACAATATTACCATCCAGAGGGATGAACTCCATA
TCATGCAGATTCCTTCTTTGATCGTCAATCCAGAATGACACGGCAGAGAG
CTTATCTGCACCAACACGTAGAGCAGGAAAGTAGGTCTTTTCTCCTGATT
CTGTAAGTTCATTTTCTTGCAATGATGAACCATGTTCAGCTTGCCATTCT
GACCACTTCTGCAAAAGCTCCTCAAGCTTCTGTTTACTAGCTCTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006568PSP_pro-rich
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding