g.arboreum_cottongen_reftransV1_0005152, g.arboreum_cottongen_reftransV1_0005152 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: B9H3R3_POPTR (Proline-rich spliceosome-associated family protein OS=Populus trichocarpa GN=POPTR_0004s10410g PE=4 SV=1) HSP 1 Score: 386.341 bits (991), Expect = 1.344e-124 Identity = 203/331 (61.33%), Postives = 242/331 (73.11%), Query Frame = -2 Query: 526 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFSD---YEDEGVPGVDSRVS---SSYPPRYG 1494 RASK+KLEELLQ+WSEW A+ SS + +E+ +SGE TYFPALR+G K SAV+FWI++Q R D IPL N VPLYDRG+A+GLTSAD N+E GLEI +A+RC+NC SY+HSLK+CPKPRDN AVNNARKQH K KRNQ+++SRN TRYYQ+S GGKYD LKPG L ET++LLGLGE DPPPWLNRM+E+GYPPGYL P DED+PSGITI+AD +V+E QEDGEI E PEP+ KM+VEFPGINA IP AD++LW S HR H + S R + + Y D+G PGVDS S SSYPPRYG Sbjct: 145 RASKKKLEELLQQWSEWHAQQNSSSHDSDEMLQSGEDTYFPALRIGMVKSSAVTFWIENQTRKQQDNAIIPLQSNYVPLYDRGYALGLTSADGPINIERGLEIVGDAARCYNCASYNHSLKECPKPRDNAAVNNARKQH-KFKRNQNSSSRNPTRYYQSSSGGKYDGLKPGSLDTETQKLLGLGELDPPPWLNRMQELGYPPGYLDPDDEDQPSGITIFADGDVNEEQEDGEITETDPPPEPQRKMSVEFPGINAAIPENADQRLW-----EVGPTSSDPWRHRSQHRLKYSSEATGRWHHHEQRQYRDDGPPGVDSVFSPSMSSYPPRYG 469
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: F6GVR1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00220 PE=4 SV=1) HSP 1 Score: 388.652 bits (997), Expect = 3.473e-124 Identity = 213/336 (63.39%), Postives = 249/336 (74.11%), Query Frame = -2 Query: 508 RASKQKLEELLQKWSEWQAEHGSSLQENE-LTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDE-PSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHX--XXXXXXXXXXRYFSDYEDEGVPGVDSRVS---SSYPPRYGNYDSPY 1494 R SK+KLEELLQ+WSEW A++ SS + + +SGEKTYFPAL VG +K SAVSFW+D+Q R D EFI LDG+ VPLYDRGFA+GL S D S EG LEI D ASRCFNCGSY+HS+K+CPKPRDNVAVNNARKQH KS+RNQ+ SRN TRYYQNS GG+YD L+PG LG ETR+LLGLGE DPPPWLNRMRE+GYPPGYL P+E+E PSGITIYAD EV + QEDGEI E + EP+ KM+VEFPGINAPIP ADE+ WA + S+ H R+NHS S E+R+ DY D+G D +S SSYPPR+G DS Y Sbjct: 188 RDSKRKLEELLQQWSEWHAKYVSSSHDPKGQLDSGEKTYFPALHVGLNKSSAVSFWVDNQTRKQQDKEFISLDGDSVPLYDRGFALGLVSEDGQSKPEGALEIID-ASRCFNCGSYNHSMKECPKPRDNVAVNNARKQH-KSRRNQNPGSRNPTRYYQNSPGGRYDGLRPGALGVETRELLGLGELDPPPWLNRMREMGYPPGYLDPEEEEQPSGITIYADEEVKDEQEDGEILE-TEYLEPQRKMSVEFPGINAPIPKNADERRWA---------AGSRPHRRLNHSYEPSSRRNSHEQRWSRDYRDDGPCDSDMEISPPRSSYPPRHGGIDSSY 511
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: V4S980_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10013582mg PE=4 SV=1) HSP 1 Score: 398.282 bits (1022), Expect = 2.722e-123 Identity = 223/380 (58.68%), Postives = 257/380 (67.63%), Query Frame = -2 Query: 364 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS-DYEDEGVPGVDSRVSSSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGSRYSPR 1494 RASKQKLEELLQ+WSEWQA+ GSS + NE E GE+T+FPA+RVG K AV ++D Q + + FIP D + PLYDRG+A+GLTS D SSNLEGGLEI D+ASRCFNCGSYSHSLK+CPKPRD AVNNARKQH KSKRNQ++ASRN RYYQNS GGKYD L+PG L AETRQLLGLGE DPPPWL+RMRE+GYPPGYL + D+D+PSGITIYAD E+ EGQEDGEI E +P + KMT EFPGINAPIP ADE+LWA SS H +HS + +S DY D+G PGVD SSYPPRYG YD + +D+ SHGSY S YS R Sbjct: 678 RASKQKLEELLQQWSEWQAQFGSSSNDPNEGIEFGEQTFFPAIRVGKAKGPAVVIFLDRQPKQQQNKNFIPSDSHSTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQH-KSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQEDGEIIE-TGRPASKRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYDYYSSHSRSPTRGRSYSDRDR---------------DDYASHGSYSSPYSNR 1038
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: E5GCT2_CUCME (Nucleic acid binding protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 377.096 bits (967), Expect = 6.256e-120 Identity = 205/337 (60.83%), Postives = 254/337 (75.37%), Query Frame = -2 Query: 508 RASKQKLEELLQKWSEWQAEHGSSLQENELTE---SGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNH---XXXXXXXXXXXRYFSDYEDEGVPGVDSRVS-SSYPPRYGNYDSPY 1494 R SKQKL+ELL++WSEW A+ GS ++++ TE SGE+T+FPAL VG K SAV+FW+D+Q+ F+P+D N VPLYDRGF +GLTSA+ SSN+EGG +I D+ASRCFNCGSY+HSLK C KPRDN AVNNAR ++ K+ ++ASRN+TRYYQNS+GGKYDDL+PG L AETRQLLGL E DPPPWLNRMRE+GYPPGYL P DED+PSGITIYAD + DE QEDGEI E + +P+ KM+VEFPGINAPIP ADE+LWAP S S R++S+ R+NH G+ ++R+ DY D+ PGVDS S S+ PRYG +D Y Sbjct: 228 RDSKQKLDELLKQWSEWHAQQGSLSRDDKDTENLESGEETFFPALCVGTKKTSAVTFWMDNQKSE-QQQTFVPIDDNSVPLYDRGFTLGLTSANDSSNVEGGQKIIDDASRCFNCGSYNHSLKDCRKPRDNAAVNNARNKY---KKQHNSASRNSTRYYQNSRGGKYDDLRPGTLDAETRQLLGLKELDPPPWLNRMRELGYPPGYLDPEDEDQPSGITIYADEKTDE-QEDGEITE-AEYRKPQKKMSVEFPGINAPIPENADERLWAP-EPSSSGLPRNRSNQRLNHYPEYDTRGNDHHQQRWSRDYRDDRPPGVDSIKSPPSFTPRYGGHDFSY 557
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A059AEG1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01460 PE=4 SV=1) HSP 1 Score: 374.015 bits (959), Expect = 7.847e-120 Identity = 187/286 (65.38%), Postives = 219/286 (76.57%), Query Frame = -2 Query: 640 RASKQKLEELLQKWSEWQAEHGSSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNH 1494 RASKQKLEELLQ+WSEW +HGSS E ESGE+T+FPALRVG +K S+VSFWID Q RN+ + I LD N VPLYDRG+A+GLT AD S+N+ G LEI ++A+RCFNCGSYSHSL++CPKPRDNVAVNNARKQH KSKR Q+ SRN+TRYY++ GK+D L+PG L ETRQLLGLGE DPPPWLNRMRE+GYPPGYL DED+ SGITI+AD+EV E EDGEI E + EP+ KMTV FPGINAPIP ADE+ WA +S+ R NH Sbjct: 159 RASKQKLEELLQQWSEWHTKHGSSQDTGEALESGEETFFPALRVGMEKQSSVSFWIDHQTRNVLNDGVITLDSNTVPLYDRGYALGLTLADGSNNVAGRLEIIEDAARCFNCGSYSHSLRECPKPRDNVAVNNARKQH-KSKRGQNPVSRNSTRYYEDPSPGKFDGLQPGTLDTETRQLLGLGELDPPPWLNRMRELGYPPGYLDIDDEDDVSGITIFADSEVSEKGEDGEIVEA--EREPKKKMTVNFPGINAPIPKNADERRWAAVPLRPESSRHHRSYQRSNH 441
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A059AF62_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01460 PE=4 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 1.940e-119 Identity = 187/286 (65.38%), Postives = 219/286 (76.57%), Query Frame = -2 Query: 640 RASKQKLEELLQKWSEWQAEHGSSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNH 1494 RASKQKLEELLQ+WSEW +HGSS E ESGE+T+FPALRVG +K S+VSFWID Q RN+ + I LD N VPLYDRG+A+GLT AD S+N+ G LEI ++A+RCFNCGSYSHSL++CPKPRDNVAVNNARKQH KSKR Q+ SRN+TRYY++ GK+D L+PG L ETRQLLGLGE DPPPWLNRMRE+GYPPGYL DED+ SGITI+AD+EV E EDGEI E + EP+ KMTV FPGINAPIP ADE+ WA +S+ R NH Sbjct: 159 RASKQKLEELLQQWSEWHTKHGSSQDTGEALESGEETFFPALRVGMEKQSSVSFWIDHQTRNVLNDGVITLDSNTVPLYDRGYALGLTLADGSNNVAGRLEIIEDAARCFNCGSYSHSLRECPKPRDNVAVNNARKQH-KSKRGQNPVSRNSTRYYEDPSPGKFDGLQPGTLDTETRQLLGLGELDPPPWLNRMRELGYPPGYLDIDDEDDVSGITIFADSEVSEKGEDGEIVEA--EREPKKKMTVNFPGINAPIPKNADERRWAAVPLRPESSRHHRSYQRSNH 441
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A0A0KSK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643930 PE=4 SV=1) HSP 1 Score: 375.555 bits (963), Expect = 2.813e-119 Identity = 206/337 (61.13%), Postives = 251/337 (74.48%), Query Frame = -2 Query: 508 RASKQKLEELLQKWSEWQAEHGS---SLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNH---XXXXXXXXXXXRYFSDYEDEGVPGVDSRVS-SSYPPRYGNYDSPY 1494 R SKQKL+ELL++WSEW A+ GS ++ E ESGE+T+FPAL VG K SAV+FW+D+Q+ F+P+D N VPLYDRGF +GLTSA+ SSN EGG +I D+ASRCFNCGSY+HSLK C KPRDN AVNNAR ++ K+ ++ASRN+TRYYQNS+GGKYDDL+PG L AETRQLLGL E DPPPWLNRMRE+GYPPGYL P DED+PSGITIYAD + DE QEDGEI E + +PR K +VEFPGINAPIP ADE+LWAP S S SR++S+ R+NH G+ ++R+ DY D+ PGVDS S S+ PRYG +D Y Sbjct: 235 RDSKQKLDELLKQWSEWHAQQGSLSCDDKDTENLESGEETFFPALCVGTKKTSAVTFWMDNQKSE-QQQNFVPIDDNSVPLYDRGFTLGLTSANDSSNAEGGQKIIDDASRCFNCGSYNHSLKDCRKPRDNAAVNNARNKY---KKQHNSASRNSTRYYQNSRGGKYDDLRPGTLDAETRQLLGLKELDPPPWLNRMRELGYPPGYLDPEDEDQPSGITIYADEKTDE-QEDGEITE-AEYRKPRKKKSVEFPGINAPIPENADERLWAP-EPSNSGLSRNRSNQRLNHYPEYDTRGNDHHQQRWSRDYRDDRPPGVDSIKSPPSFTPRYGGHDFSY 564
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: K7LXS2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 372.089 bits (954), Expect = 2.938e-119 Identity = 204/335 (60.90%), Postives = 252/335 (75.22%), Query Frame = -2 Query: 514 RASKQKLEELLQKWSEWQAEHG-SSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLW---APXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRY-FSDYEDEGVPGVDSRVSS--SYPPRYGNYDS 1494 RAS+QKL+ELLQ+WSEW A+H SS +E+ ESGE+T+FPAL VG +K SAVSFW+++Q R + +FIPL N VPLYDRG+ +GLTSAD SSN++GGLEI D A+RCFNCGSY+HSL++CP+PRDN AVNNAR +H KS+RNQ+++SRN TRYYQNS GKYD L+PG L TRQLLGLGE DPPPWLNRMRE+GYPPGYL DED+PSGITIY D E+ + QEDGEI E +P+ K TV+FPGINAPIP ADE+LW A SS+ ++ S HR N+S++ GSRG R + D D+G PG SS S+ PR+G +DS Sbjct: 101 RASRQKLQELLQQWSEWHAKHVLSSNDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRKDKNKDFIPLADNSVPLYDRGYTLGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNTAVNNARNKH-KSRRNQNSSSRNPTRYYQNSPAGKYDGLRPGALDDATRQLLGLGELDPPPWLNRMRELGYPPGYLDVDDEDQPSGITIYTDREIAD-QEDGEIME-ADASKPKRKKTVKFPGINAPIPDNADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDDGPPGDPGHSSSKFSFHPRFGGHDS 432
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A0B2PNH7_GLYSO (Zinc finger CCHC domain-containing protein 8 OS=Glycine soja GN=glysoja_047756 PE=4 SV=1) HSP 1 Score: 372.089 bits (954), Expect = 3.329e-119 Identity = 204/335 (60.90%), Postives = 252/335 (75.22%), Query Frame = -2 Query: 514 RASKQKLEELLQKWSEWQAEHG-SSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLW---APXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRY-FSDYEDEGVPGVDSRVSS--SYPPRYGNYDS 1494 RAS+QKL+ELLQ+WSEW A+H SS +E+ ESGE+T+FPAL VG +K SAVSFW+++Q R + +FIPL N VPLYDRG+ +GLTSAD SSN++GGLEI D A+RCFNCGSY+HSL++CP+PRDN AVNNAR +H KS+RNQ+++SRN TRYYQNS GKYD L+PG L TRQLLGLGE DPPPWLNRMRE+GYPPGYL DED+PSGITIY D E+ + QEDGEI E +P+ K TV+FPGINAPIP ADE+LW A SS+ ++ S HR N+S++ GSRG R + D D+G PG SS S+ PR+G +DS Sbjct: 98 RASRQKLQELLQQWSEWHAKHVLSSNDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRKDKNKDFIPLADNSVPLYDRGYTLGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNTAVNNARNKH-KSRRNQNSSSRNPTRYYQNSPAGKYDGLRPGALDDATRQLLGLGELDPPPWLNRMRELGYPPGYLDVDDEDQPSGITIYTDREIAD-QEDGEIME-ADASKPKRKKTVKFPGINAPIPDNADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDDGPPGDPGHSSSKFSFHPRFGGHDS 429
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: K7MWG1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 365.925 bits (938), Expect = 6.801e-117 Identity = 201/335 (60.00%), Postives = 254/335 (75.82%), Query Frame = -2 Query: 514 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPD-EDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLW---APXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRY-FSDYEDEGVPG--VDSRVSSSYPPRYGNYDS 1494 RAS+QKL+ELLQKWS W A+H SS + +E+ ESGE+T+FPAL VG +K SAVSFW+++Q RN + +FIPL N VPLYDRG+A+GLTSAD SSN++GGLEI D A+RCFNCGSY+HSL++CP+PRDN+AVNNAR + KS+RNQ+++SR+ TRYYQNS GKYD L+PG L TR+LLGL E DPPPWLNRMRE+GYPPGYL D ED+PSGITI+ D+E+ + QEDGEI E +P+ K TV+FPGINAPIP +ADE+LW A SS+ ++ S HR N+S++ GSRG R + D DEG PG S S+ PR+G +DS Sbjct: 103 RASRQKLQELLQKWSAWHAKHVSSSSDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRNDKNKDFIPLADNTVPLYDRGYALGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNIAVNNARDK-LKSRRNQNSSSRHPTRYYQNSPAGKYDGLRPGSLDDATRKLLGLRELDPPPWLNRMRELGYPPGYLDVDNEDQPSGITIFTDSEIAD-QEDGEIME-ANASKPKRKKTVKFPGINAPIPEKADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDEGPPGDPGHSSFMFSFHPRFGGHDS 434
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_XENLA (Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis GN=zcchc8 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 4.347e-21 Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = -2 Query: 727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEI----AEMVQQPEPRMKMTVEFPGINAPIP 1269 +P Y + F + S D G EI+ +A R CFNCGS H ++ CPKPRD +N RK+ + A ++N RY+ ++ KPGV+ E ++ LG+ + + PP++ RMRE+GYPPG+L E E SG+++Y D + DGEI E + + V +PG N P Sbjct: 186 IPKYQQVFTQ-IVSLD-------GQEIQVKAKRPKPCCFNCGSEEHQMRDCPKPRDQAHINMKRKEFLDA--CGEAGNQNQQRYHAEEVEERFGKYKPGVISEELQEALGIMDKNLPPFIYRMRELGYPPGWLKEAELENSGLSLY-DGKERLDASDGEIEDRDTEAKKHVSYDVSKLVNYPGFNISAP 363
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_CHICK (Zinc finger CCHC domain-containing protein 8 OS=Gallus gallus GN=ZCCHC8 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.350e-18 Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2 Query: 727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPR---MKMTVEFPGINAPIP 1269 +P Y + F+ L S D E ++ K S CFNCGS H +K CPKPR+ ++ RK+ ++ +++ RY+ ++ KPGV+ E + LG+ PP++ RMR++GYPPG+L E E SG+ +Y + +E +++G + QP+ + + +PG N P Sbjct: 99 IPKYQQVFSQIL-SLDGQ---EIQVKPKRPKSHCFNCGSEEHQIKDCPKPRNAARISEKRKEFMEA-YGEASNQNFQQRYHAEEVEERFGKFKPGVISGELQDALGVTAKSLPPFIYRMRQLGYPPGWLKEAEMEHSGLALYDGKDDNETEDEGYL-----QPKHVTYDVSKLINYPGFNISTP 272
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_PONAB (Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii GN=ZCCHC8 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.524e-18 Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = -2 Query: 727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRN-ATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200 G EI+ +A R CFNCGS H +K CP PR+ ++ RK++ + A ++N RY+ ++ KPGV+ E + LG+ + PP++ RMR++GYPPG+L E E SG+ +Y + +G+ E+ E+ Q ++ V +PG N P Sbjct: 213 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDA--CGEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDGE--TEVGEIQQNKSVTYDLSKLVNYPGFNISTP 373
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_HUMAN (Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens GN=ZCCHC8 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 6.784e-18 Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = -2 Query: 727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200 G EI+ +A R CFNCGS H +K CP PR+ ++ RK++ + ++ RY+ ++ KPGV+ E + LG+ + PP++ RMR++GYPPG+L E E SG+ +Y + +G + E+ E+ Q ++ V +PG N P Sbjct: 215 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDAC-GEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDG--ETEVGEIQQNKSVTYDLSKLVNYPGFNISTP 375
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_MOUSE (Zinc finger CCHC domain-containing protein 8 OS=Mus musculus GN=Zcchc8 PE=2 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 9.519e-18 Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2 Query: 727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-ADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIP 1200 G E++ +A R CFNCGS H +K+CP PR+ ++ RK++ + S S RY+ ++ KPGV+ E + LG+ + PP++ RMR++GYPPG+L E E SG+ +Y + + D E GEI + + V +PG N P Sbjct: 218 GQEMQVKAKRPKPHCFNCGSEEHQMKECPMPRNAARISEKRKEYMDACGEASGQSFQ-QRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGNDDADGETETGEIQN--KNVTYDLSKLVNYPGFNISTP 377
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_DROME (Zinc finger CCHC domain-containing protein 8 homolog OS=Drosophila melanogaster GN=CG4622 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.478e-13 Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = -2 Query: 736 SRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-AD-AEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINA 1176 S CFNCG HSL+ C KPR+N + ARK+ + RY+ +++ ++ ++PG + +TR +G P RMR +GYPP +L + + SGI ++ AD +EV + E+ +E + + VE+PG N Sbjct: 183 SSCFNCGDTEHSLRDCTKPRNNSRITRARKK----------MTSRTERYHVDTE-QRFGHIRPGKISTKTRHAMGYSRGQLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESETFKYD---VNKIVEYPGFNV 317 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005152 ID=g.arboreum_cottongen_reftransV1_0005152; Name=g.arboreum_cottongen_reftransV1_0005152; organism=Gossypium arboreum; type=contig; length=1495bpback to top |