g.arboreum_cottongen_reftransV1_0005152, g.arboreum_cottongen_reftransV1_0005152 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005152
Unique Nameg.arboreum_cottongen_reftransV1_0005152
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr13chromosomeg.arboreum_cottongen_reftransV1_0005152:1..1494 .
Chr13:101631934..101636199 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: B9H3R3_POPTR (Proline-rich spliceosome-associated family protein OS=Populus trichocarpa GN=POPTR_0004s10410g PE=4 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 1.344e-124
Identity = 203/331 (61.33%), Postives = 242/331 (73.11%), Query Frame = -2
Query:  526 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFSD---YEDEGVPGVDSRVS---SSYPPRYG 1494
            RASK+KLEELLQ+WSEW A+  SS  + +E+ +SGE TYFPALR+G  K SAV+FWI++Q R   D   IPL  N VPLYDRG+A+GLTSAD   N+E GLEI  +A+RC+NC SY+HSLK+CPKPRDN AVNNARKQH K KRNQ+++SRN TRYYQ+S GGKYD LKPG L  ET++LLGLGE DPPPWLNRM+E+GYPPGYL P DED+PSGITI+AD +V+E QEDGEI E    PEP+ KM+VEFPGINA IP  AD++LW          S     HR  H  +  S    R +  +   Y D+G PGVDS  S   SSYPPRYG
Sbjct:  145 RASKKKLEELLQQWSEWHAQQNSSSHDSDEMLQSGEDTYFPALRIGMVKSSAVTFWIENQTRKQQDNAIIPLQSNYVPLYDRGYALGLTSADGPINIERGLEIVGDAARCYNCASYNHSLKECPKPRDNAAVNNARKQH-KFKRNQNSSSRNPTRYYQSSSGGKYDGLKPGSLDTETQKLLGLGELDPPPWLNRMQELGYPPGYLDPDDEDQPSGITIFADGDVNEEQEDGEITETDPPPEPQRKMSVEFPGINAAIPENADQRLW-----EVGPTSSDPWRHRSQHRLKYSSEATGRWHHHEQRQYRDDGPPGVDSVFSPSMSSYPPRYG 469          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: F6GVR1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00220 PE=4 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 3.473e-124
Identity = 213/336 (63.39%), Postives = 249/336 (74.11%), Query Frame = -2
Query:  508 RASKQKLEELLQKWSEWQAEHGSSLQENE-LTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDE-PSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHX--XXXXXXXXXXRYFSDYEDEGVPGVDSRVS---SSYPPRYGNYDSPY 1494
            R SK+KLEELLQ+WSEW A++ SS  + +   +SGEKTYFPAL VG +K SAVSFW+D+Q R   D EFI LDG+ VPLYDRGFA+GL S D  S  EG LEI D ASRCFNCGSY+HS+K+CPKPRDNVAVNNARKQH KS+RNQ+  SRN TRYYQNS GG+YD L+PG LG ETR+LLGLGE DPPPWLNRMRE+GYPPGYL P+E+E PSGITIYAD EV + QEDGEI E  +  EP+ KM+VEFPGINAPIP  ADE+ WA         + S+ H R+NHS    S     E+R+  DY D+G    D  +S   SSYPPR+G  DS Y
Sbjct:  188 RDSKRKLEELLQQWSEWHAKYVSSSHDPKGQLDSGEKTYFPALHVGLNKSSAVSFWVDNQTRKQQDKEFISLDGDSVPLYDRGFALGLVSEDGQSKPEGALEIID-ASRCFNCGSYNHSMKECPKPRDNVAVNNARKQH-KSRRNQNPGSRNPTRYYQNSPGGRYDGLRPGALGVETRELLGLGELDPPPWLNRMREMGYPPGYLDPEEEEQPSGITIYADEEVKDEQEDGEILE-TEYLEPQRKMSVEFPGINAPIPKNADERRWA---------AGSRPHRRLNHSYEPSSRRNSHEQRWSRDYRDDGPCDSDMEISPPRSSYPPRHGGIDSSY 511          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: V4S980_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10013582mg PE=4 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.722e-123
Identity = 223/380 (58.68%), Postives = 257/380 (67.63%), Query Frame = -2
Query:  364 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRYFS-DYEDEGVPGVDSRVSSSYPPRYGNYDSPYGFNXXXXXXXXXXXXXXXXXXXXXXXXSPLVYEDFGSHGSYGSRYSPR 1494
            RASKQKLEELLQ+WSEWQA+ GSS  + NE  E GE+T+FPA+RVG  K  AV  ++D Q +   +  FIP D +  PLYDRG+A+GLTS D SSNLEGGLEI D+ASRCFNCGSYSHSLK+CPKPRD  AVNNARKQH KSKRNQ++ASRN  RYYQNS GGKYD L+PG L AETRQLLGLGE DPPPWL+RMRE+GYPPGYL + D+D+PSGITIYAD E+ EGQEDGEI E   +P  + KMT EFPGINAPIP  ADE+LWA   SS         H   +HS          + +S DY D+G PGVD    SSYPPRYG YD     +                             +D+ SHGSY S YS R
Sbjct:  678 RASKQKLEELLQQWSEWQAQFGSSSNDPNEGIEFGEQTFFPAIRVGKAKGPAVVIFLDRQPKQQQNKNFIPSDSHSTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQH-KSKRNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQLLGLGELDPPPWLHRMRELGYPPGYLDSEDDDQPSGITIYADGEIKEGQEDGEIIE-TGRPASKRKMTTEFPGINAPIPENADERLWAARPSSSDSSRDRSHHRLNHHSESISRGRYHEQRWSRDYRDDGPPGVDP--VSSYPPRYGGYDYYSSHSRSPTRGRSYSDRDR---------------DDYASHGSYSSPYSNR 1038          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: E5GCT2_CUCME (Nucleic acid binding protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 6.256e-120
Identity = 205/337 (60.83%), Postives = 254/337 (75.37%), Query Frame = -2
Query:  508 RASKQKLEELLQKWSEWQAEHGSSLQENELTE---SGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNH---XXXXXXXXXXXRYFSDYEDEGVPGVDSRVS-SSYPPRYGNYDSPY 1494
            R SKQKL+ELL++WSEW A+ GS  ++++ TE   SGE+T+FPAL VG  K SAV+FW+D+Q+       F+P+D N VPLYDRGF +GLTSA+ SSN+EGG +I D+ASRCFNCGSY+HSLK C KPRDN AVNNAR ++   K+  ++ASRN+TRYYQNS+GGKYDDL+PG L AETRQLLGL E DPPPWLNRMRE+GYPPGYL P DED+PSGITIYAD + DE QEDGEI E  +  +P+ KM+VEFPGINAPIP  ADE+LWAP   S S   R++S+ R+NH       G+   ++R+  DY D+  PGVDS  S  S+ PRYG +D  Y
Sbjct:  228 RDSKQKLDELLKQWSEWHAQQGSLSRDDKDTENLESGEETFFPALCVGTKKTSAVTFWMDNQKSE-QQQTFVPIDDNSVPLYDRGFTLGLTSANDSSNVEGGQKIIDDASRCFNCGSYNHSLKDCRKPRDNAAVNNARNKY---KKQHNSASRNSTRYYQNSRGGKYDDLRPGTLDAETRQLLGLKELDPPPWLNRMRELGYPPGYLDPEDEDQPSGITIYADEKTDE-QEDGEITE-AEYRKPQKKMSVEFPGINAPIPENADERLWAP-EPSSSGLPRNRSNQRLNHYPEYDTRGNDHHQQRWSRDYRDDRPPGVDSIKSPPSFTPRYGGHDFSY 557          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A059AEG1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01460 PE=4 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 7.847e-120
Identity = 187/286 (65.38%), Postives = 219/286 (76.57%), Query Frame = -2
Query:  640 RASKQKLEELLQKWSEWQAEHGSSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNH 1494
            RASKQKLEELLQ+WSEW  +HGSS    E  ESGE+T+FPALRVG +K S+VSFWID Q RN+ +   I LD N VPLYDRG+A+GLT AD S+N+ G LEI ++A+RCFNCGSYSHSL++CPKPRDNVAVNNARKQH KSKR Q+  SRN+TRYY++   GK+D L+PG L  ETRQLLGLGE DPPPWLNRMRE+GYPPGYL   DED+ SGITI+AD+EV E  EDGEI E   + EP+ KMTV FPGINAPIP  ADE+ WA            +S+ R NH
Sbjct:  159 RASKQKLEELLQQWSEWHTKHGSSQDTGEALESGEETFFPALRVGMEKQSSVSFWIDHQTRNVLNDGVITLDSNTVPLYDRGYALGLTLADGSNNVAGRLEIIEDAARCFNCGSYSHSLRECPKPRDNVAVNNARKQH-KSKRGQNPVSRNSTRYYEDPSPGKFDGLQPGTLDTETRQLLGLGELDPPPWLNRMRELGYPPGYLDIDDEDDVSGITIFADSEVSEKGEDGEIVEA--EREPKKKMTVNFPGINAPIPKNADERRWAAVPLRPESSRHHRSYQRSNH 441          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A059AF62_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01460 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.940e-119
Identity = 187/286 (65.38%), Postives = 219/286 (76.57%), Query Frame = -2
Query:  640 RASKQKLEELLQKWSEWQAEHGSSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNH 1494
            RASKQKLEELLQ+WSEW  +HGSS    E  ESGE+T+FPALRVG +K S+VSFWID Q RN+ +   I LD N VPLYDRG+A+GLT AD S+N+ G LEI ++A+RCFNCGSYSHSL++CPKPRDNVAVNNARKQH KSKR Q+  SRN+TRYY++   GK+D L+PG L  ETRQLLGLGE DPPPWLNRMRE+GYPPGYL   DED+ SGITI+AD+EV E  EDGEI E   + EP+ KMTV FPGINAPIP  ADE+ WA            +S+ R NH
Sbjct:  159 RASKQKLEELLQQWSEWHTKHGSSQDTGEALESGEETFFPALRVGMEKQSSVSFWIDHQTRNVLNDGVITLDSNTVPLYDRGYALGLTLADGSNNVAGRLEIIEDAARCFNCGSYSHSLRECPKPRDNVAVNNARKQH-KSKRGQNPVSRNSTRYYEDPSPGKFDGLQPGTLDTETRQLLGLGELDPPPWLNRMRELGYPPGYLDIDDEDDVSGITIFADSEVSEKGEDGEIVEA--EREPKKKMTVNFPGINAPIPKNADERRWAAVPLRPESSRHHRSYQRSNH 441          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A0A0KSK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643930 PE=4 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 2.813e-119
Identity = 206/337 (61.13%), Postives = 251/337 (74.48%), Query Frame = -2
Query:  508 RASKQKLEELLQKWSEWQAEHGS---SLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAP-DEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLWAPXXXXXXXXXXXXSHHRVNH---XXXXXXXXXXXRYFSDYEDEGVPGVDSRVS-SSYPPRYGNYDSPY 1494
            R SKQKL+ELL++WSEW A+ GS     ++ E  ESGE+T+FPAL VG  K SAV+FW+D+Q+       F+P+D N VPLYDRGF +GLTSA+ SSN EGG +I D+ASRCFNCGSY+HSLK C KPRDN AVNNAR ++   K+  ++ASRN+TRYYQNS+GGKYDDL+PG L AETRQLLGL E DPPPWLNRMRE+GYPPGYL P DED+PSGITIYAD + DE QEDGEI E  +  +PR K +VEFPGINAPIP  ADE+LWAP   S S  SR++S+ R+NH       G+   ++R+  DY D+  PGVDS  S  S+ PRYG +D  Y
Sbjct:  235 RDSKQKLDELLKQWSEWHAQQGSLSCDDKDTENLESGEETFFPALCVGTKKTSAVTFWMDNQKSE-QQQNFVPIDDNSVPLYDRGFTLGLTSANDSSNAEGGQKIIDDASRCFNCGSYNHSLKDCRKPRDNAAVNNARNKY---KKQHNSASRNSTRYYQNSRGGKYDDLRPGTLDAETRQLLGLKELDPPPWLNRMRELGYPPGYLDPEDEDQPSGITIYADEKTDE-QEDGEITE-AEYRKPRKKKSVEFPGINAPIPENADERLWAP-EPSNSGLSRNRSNQRLNHYPEYDTRGNDHHQQRWSRDYRDDRPPGVDSIKSPPSFTPRYGGHDFSY 564          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: K7LXS2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 2.938e-119
Identity = 204/335 (60.90%), Postives = 252/335 (75.22%), Query Frame = -2
Query:  514 RASKQKLEELLQKWSEWQAEHG-SSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLW---APXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRY-FSDYEDEGVPGVDSRVSS--SYPPRYGNYDS 1494
            RAS+QKL+ELLQ+WSEW A+H  SS   +E+ ESGE+T+FPAL VG +K SAVSFW+++Q R   + +FIPL  N VPLYDRG+ +GLTSAD SSN++GGLEI D A+RCFNCGSY+HSL++CP+PRDN AVNNAR +H KS+RNQ+++SRN TRYYQNS  GKYD L+PG L   TRQLLGLGE DPPPWLNRMRE+GYPPGYL   DED+PSGITIY D E+ + QEDGEI E     +P+ K TV+FPGINAPIP  ADE+LW   A   SS+  ++ S   HR N+S++ GSRG  R +   D  D+G PG     SS  S+ PR+G +DS
Sbjct:  101 RASRQKLQELLQQWSEWHAKHVLSSNDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRKDKNKDFIPLADNSVPLYDRGYTLGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNTAVNNARNKH-KSRRNQNSSSRNPTRYYQNSPAGKYDGLRPGALDDATRQLLGLGELDPPPWLNRMRELGYPPGYLDVDDEDQPSGITIYTDREIAD-QEDGEIME-ADASKPKRKKTVKFPGINAPIPDNADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDDGPPGDPGHSSSKFSFHPRFGGHDS 432          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: A0A0B2PNH7_GLYSO (Zinc finger CCHC domain-containing protein 8 OS=Glycine soja GN=glysoja_047756 PE=4 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 3.329e-119
Identity = 204/335 (60.90%), Postives = 252/335 (75.22%), Query Frame = -2
Query:  514 RASKQKLEELLQKWSEWQAEHG-SSLQENELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYL-APDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLW---APXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRY-FSDYEDEGVPGVDSRVSS--SYPPRYGNYDS 1494
            RAS+QKL+ELLQ+WSEW A+H  SS   +E+ ESGE+T+FPAL VG +K SAVSFW+++Q R   + +FIPL  N VPLYDRG+ +GLTSAD SSN++GGLEI D A+RCFNCGSY+HSL++CP+PRDN AVNNAR +H KS+RNQ+++SRN TRYYQNS  GKYD L+PG L   TRQLLGLGE DPPPWLNRMRE+GYPPGYL   DED+PSGITIY D E+ + QEDGEI E     +P+ K TV+FPGINAPIP  ADE+LW   A   SS+  ++ S   HR N+S++ GSRG  R +   D  D+G PG     SS  S+ PR+G +DS
Sbjct:   98 RASRQKLQELLQQWSEWHAKHVLSSNDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRKDKNKDFIPLADNSVPLYDRGYTLGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNTAVNNARNKH-KSRRNQNSSSRNPTRYYQNSPAGKYDGLRPGALDDATRQLLGLGELDPPPWLNRMRELGYPPGYLDVDDEDQPSGITIYTDREIAD-QEDGEIME-ADASKPKRKKTVKFPGINAPIPDNADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDDGPPGDPGHSSSKFSFHPRFGGHDS 429          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Match: K7MWG1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 6.801e-117
Identity = 201/335 (60.00%), Postives = 254/335 (75.82%), Query Frame = -2
Query:  514 RASKQKLEELLQKWSEWQAEHGSSLQE-NELTESGEKTYFPALRVGADKLSAVSFWIDDQRRNLHDMEFIPLDGNIVPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPD-EDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIPVEADEKLW---APXXXXXXXXXXXXSHHRVNHXXXXXXXXXXXRY-FSDYEDEGVPG--VDSRVSSSYPPRYGNYDS 1494
            RAS+QKL+ELLQKWS W A+H SS  + +E+ ESGE+T+FPAL VG +K SAVSFW+++Q RN  + +FIPL  N VPLYDRG+A+GLTSAD SSN++GGLEI D A+RCFNCGSY+HSL++CP+PRDN+AVNNAR +  KS+RNQ+++SR+ TRYYQNS  GKYD L+PG L   TR+LLGL E DPPPWLNRMRE+GYPPGYL  D ED+PSGITI+ D+E+ + QEDGEI E     +P+ K TV+FPGINAPIP +ADE+LW   A   SS+  ++ S   HR N+S++ GSRG  R +   D  DEG PG    S    S+ PR+G +DS
Sbjct:  103 RASRQKLQELLQKWSAWHAKHVSSSSDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRNDKNKDFIPLADNTVPLYDRGYALGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNIAVNNARDK-LKSRRNQNSSSRHPTRYYQNSPAGKYDGLRPGSLDDATRKLLGLRELDPPPWLNRMRELGYPPGYLDVDNEDQPSGITIFTDSEIAD-QEDGEIME-ANASKPKRKKTVKFPGINAPIPEKADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDEGPPGDPGHSSFMFSFHPRFGGHDS 434          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_XENLA (Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis GN=zcchc8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.347e-21
Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = -2
Query:  727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEI----AEMVQQPEPRMKMTVEFPGINAPIP 1269
            +P Y + F   + S D       G EI+ +A R    CFNCGS  H ++ CPKPRD   +N  RK+   +     A ++N  RY+      ++   KPGV+  E ++ LG+ + + PP++ RMRE+GYPPG+L   E E SG+++Y D +      DGEI     E  +     +   V +PG N   P
Sbjct:  186 IPKYQQVFTQ-IVSLD-------GQEIQVKAKRPKPCCFNCGSEEHQMRDCPKPRDQAHINMKRKEFLDA--CGEAGNQNQQRYHAEEVEERFGKYKPGVISEELQEALGIMDKNLPPFIYRMRELGYPPGWLKEAELENSGLSLY-DGKERLDASDGEIEDRDTEAKKHVSYDVSKLVNYPGFNISAP 363          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_CHICK (Zinc finger CCHC domain-containing protein 8 OS=Gallus gallus GN=ZCCHC8 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.350e-18
Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2
Query:  727 VPLYDRGFAMGLTSADASSNLEGGLEIKDEASRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPR---MKMTVEFPGINAPIP 1269
            +P Y + F+  L S D     E  ++ K   S CFNCGS  H +K CPKPR+   ++  RK+  ++   +++      RY+      ++   KPGV+  E +  LG+     PP++ RMR++GYPPG+L   E E SG+ +Y   + +E +++G +     QP+     +   + +PG N   P
Sbjct:   99 IPKYQQVFSQIL-SLDGQ---EIQVKPKRPKSHCFNCGSEEHQIKDCPKPRNAARISEKRKEFMEA-YGEASNQNFQQRYHAEEVEERFGKFKPGVISGELQDALGVTAKSLPPFIYRMRQLGYPPGWLKEAEMEHSGLALYDGKDDNETEDEGYL-----QPKHVTYDVSKLINYPGFNISTP 272          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_PONAB (Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii GN=ZCCHC8 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.524e-18
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = -2
Query:  727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRN-ATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200
            G EI+ +A R    CFNCGS  H +K CP PR+   ++  RK++  +     A ++N   RY+      ++   KPGV+  E +  LG+ +   PP++ RMR++GYPPG+L   E E SG+ +Y   +  +G+   E+ E+ Q       ++  V +PG N   P
Sbjct:  213 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDA--CGEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDGE--TEVGEIQQNKSVTYDLSKLVNYPGFNISTP 373          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_HUMAN (Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens GN=ZCCHC8 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.784e-18
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = -2
Query:  727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIYADAEVDEGQEDGEIAEMVQQPEPRMKMT--VEFPGINAPIP 1200
            G EI+ +A R    CFNCGS  H +K CP PR+   ++  RK++  +   ++       RY+      ++   KPGV+  E +  LG+ +   PP++ RMR++GYPPG+L   E E SG+ +Y   +  +G  + E+ E+ Q       ++  V +PG N   P
Sbjct:  215 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDAC-GEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDG--ETEVGEIQQNKSVTYDLSKLVNYPGFNISTP 375          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_MOUSE (Zinc finger CCHC domain-containing protein 8 OS=Mus musculus GN=Zcchc8 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.519e-18
Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2
Query:  727 GLEIKDEASR----CFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-ADAEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINAPIP 1200
            G E++ +A R    CFNCGS  H +K+CP PR+   ++  RK++  +    S  S    RY+      ++   KPGV+  E +  LG+ +   PP++ RMR++GYPPG+L   E E SG+ +Y  + + D   E GEI    +     +   V +PG N   P
Sbjct:  218 GQEMQVKAKRPKPHCFNCGSEEHQMKECPMPRNAARISEKRKEYMDACGEASGQSFQ-QRYHAEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGNDDADGETETGEIQN--KNVTYDLSKLVNYPGFNISTP 377          
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Match: ZCHC8_DROME (Zinc finger CCHC domain-containing protein 8 homolog OS=Drosophila melanogaster GN=CG4622 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.478e-13
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = -2
Query:  736 SRCFNCGSYSHSLKQCPKPRDNVAVNNARKQHQKSKRNQSAASRNATRYYQNSQGGKYDDLKPGVLGAETRQLLGLGEFDPPPWLNRMREIGYPPGYLAPDEDEPSGITIY-AD-AEVDEGQEDGEIAEMVQQPEPRMKMTVEFPGINA 1176
            S CFNCG   HSL+ C KPR+N  +  ARK+           +    RY+ +++  ++  ++PG +  +TR  +G      P    RMR +GYPP +L   + + SGI ++ AD +EV +  E+   +E  +     +   VE+PG N 
Sbjct:  183 SSCFNCGDTEHSLRDCTKPRNNSRITRARKK----------MTSRTERYHVDTE-QRFGHIRPGKISTKTRHAMGYSRGQLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESETFKYD---VNKIVEYPGFNV 317          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9H3R3_POPTR1.344e-12461.33Proline-rich spliceosome-associated family protein... [more]
F6GVR1_VITVI3.473e-12463.39Putative uncharacterized protein OS=Vitis vinifera... [more]
V4S980_9ROSI2.722e-12358.68Uncharacterized protein (Fragment) OS=Citrus cleme... [more]
E5GCT2_CUCME6.256e-12060.83Nucleic acid binding protein OS=Cucumis melo subsp... [more]
A0A059AEG1_EUCGR7.847e-12065.38Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A059AF62_EUCGR1.940e-11965.38Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A0A0KSK4_CUCSA2.813e-11961.13Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
K7LXS2_SOYBN2.938e-11960.90Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2PNH7_GLYSO3.329e-11960.90Zinc finger CCHC domain-containing protein 8 OS=Gl... [more]
K7MWG1_SOYBN6.801e-11760.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0005152 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ZCHC8_XENLA4.347e-2134.39Zinc finger CCHC domain-containing protein 8 OS=Xe... [more]
ZCHC8_CHICK1.350e-1830.98Zinc finger CCHC domain-containing protein 8 OS=Ga... [more]
ZCHC8_PONAB6.524e-1833.33Zinc finger CCHC domain-containing protein 8 OS=Po... [more]
ZCHC8_HUMAN6.784e-1832.32Zinc finger CCHC domain-containing protein 8 OS=Ho... [more]
ZCHC8_MOUSE9.519e-1833.74Zinc finger CCHC domain-containing protein 8 OS=Mu... [more]
ZCHC8_DROME1.478e-1331.54Zinc finger CCHC domain-containing protein 8 homol... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006568PSP, proline-richSMARTSM00581testneucoord: 154..206
e-value: 3.9E-11
score: 53.0
IPR006568PSP, proline-richPFAMPF04046PSPcoord: 158..196
e-value: 9.3E-14
score: 50.9
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 95..130
e-value: 1.1E-4
score: 21.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 98..114
score: 8.944
NoneNo IPR availablePANTHERPTHR13316ZINC FINGER, CCHC DOMAIN CONTAINING 8coord: 1..341

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005152 ID=g.arboreum_cottongen_reftransV1_0005152; Name=g.arboreum_cottongen_reftransV1_0005152; organism=Gossypium arboreum; type=contig; length=1495bp
GTAATATCCACCCGACTATCATCCCCAAGAAAGAAGAGATTATAATAAGA
GCAAGATGACTAATACATCTACGGTAAACAAACCATTTAAATTAATCTTA
GGCCTATCTATCTAAATCATTGTACAATGATCTTCCCACTTCACTGTTGC
TAAAACTATCAATGCATCCACCCTTTGTCTAGAAATCTTTACAAGTTATG
TGGGCCACAGGGGGTGCTAAACAATCATATCTACTGACAAAATTGAAAGT
TACAACAGTGCCATTCACCACCGGCTGTGATATCGATGGCTACTATACCG
AGATGAATAATCCAGGTAGCTGTTGTCCCATCTTTCATCGGTCTCATATT
CAAATCCATGAGCTCTTGGAGAATATCTTGAACCGTAGGAGCCATGACTA
CCAAAATCTTCATATACCAAGGGGCTCCTTCTACCCCTCTCATAATACGA
CCTTCCCGAGGTGGGGCTTCGTGGCCTTGGAATAGGATCTCTTGGACTGT
TAAAACCGTATGGTGAATCATAATTACCATACCTTGGGGGATAGGATGAA
CTAACTCTGGAGTCAACTCCGGGAACGCCTTCATCTTCATAATCACTAAA
ATACCTTCGTTCCAGCCCTCTGCTGCCAGATTCAGAAGAATGGTTCACTC
TATGGTGCGACTGTGACCTACTCTTGAATGATTCAGAACTTCGACTAGGA
GCCCAAAGTTTTTCATCTGCCTCAACAGGGATTGGTGCATTTATGCCTGG
AAATTCAACTGTCATTTTCATCCGTGGTTCAGGCTGCTGCACCATCTCAG
CAATTTCTCCATCTTCCTGTCCTTCATCGACTTCGGCATCAGCATATATT
GTAATTCCAGATGGCTCATCCTCGTCAGGGGCTAGATATCCCGGTGGGTA
CCCAATTTCTCGCATTCTATTAAGCCACGGTGGAGGGTCGAACTCCCCAA
GGCCTAATAGTTGTCGTGTTTCAGCACCAAGAACACCAGGCTTTAGATCA
TCATACTTTCCACCTTGAGAGTTCTGATAATAGCGAGTTGCATTGCGAGA
AGCAGCACTCTGATTACGTTTGGACTTTTGGTGTTGCTTTCGAGCATTGT
TGACAGCAACATTGTCACGAGGCTTTGGGCATTGCTTCAGGGAATGACTA
TAAGAACCACAGTTGAAACAACGGGAAGCCTCGTCTTTTATCTCCAGGCC
TCCTTCCAAATTACTTGAAGCATCTGCTGAAGTCAAACCCATTGCAAACC
CACGATCATAAAGTGGCACAATATTACCATCCAGAGGGATGAACTCCATA
TCATGCAGATTCCTTCTTTGATCGTCAATCCAGAATGACACGGCAGAGAG
CTTATCTGCACCAACACGTAGAGCAGGAAAGTAGGTCTTTTCTCCTGATT
CTGTAAGTTCATTTTCTTGCAATGATGAACCATGTTCAGCTTGCCATTCT
GACCACTTCTGCAAAAGCTCCTCAAGCTTCTGTTTACTAGCTCTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006568PSP_pro-rich
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding