g.arboreum_cottongen_reftransV1_0012685, g.arboreum_cottongen_reftransV1_0012685 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0012685
Unique Nameg.arboreum_cottongen_reftransV1_0012685
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1356
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
Chr11chromosomeg.arboreum_cottongen_reftransV1_0012685:1..1356 .
Chr11:103808052..103809407 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: I1KU61_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 4.424e-112
Identity = 174/290 (60.00%), Postives = 226/290 (77.93%), Query Frame = 3
Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDE-FLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDR-SKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQE 965
             V KAV+ALLKWR SQS+  KP+L ++DE ++YLI++LKKIP K+RVNP K+PLPH +    +E CL +DDR +K+ +TK  A  +I+SE+IP+NK++KLSKL +DY+PFEAKRKLCDSYD+FFA+K I+PLLPRLLGK FFKK+KIPVPVDLK  NWKEQ+  ACSSAMLF+ +GTC VV+VAK+ +E+ EIVENV+AAI G  E VP KWGN+RS HLKLL+SLALP++Q +PD++LKI        ++   K++ E +E D S  +    KK KGRIH+V+YMD  E
Sbjct:   10 TVSKAVDALLKWRRSQSETLKPKLFDEDEEYVYLILTLKKIPSKSRVNPHKIPLPHSLFSPFSEQCLILDDRPNKARVTKAQAQARIQSESIPVNKILKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKSFFKKRKIPVPVDLKKGNWKEQVEKACSSAMLFMRTGTCSVVRVAKVRMERDEIVENVVAAIEGAVEVVPKKWGNVRSLHLKLLESLALPVYQTVPDVKLKIDGFKVEEGATTTTKKKNETKEKD-SEGEVSDSKKKKGRIHEVRYMDEIE 298          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A0B2QYR0_GLYSO (Ribosomal L1 domain-containing protein 1 OS=Glycine soja GN=glysoja_011393 PE=4 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 4.424e-112
Identity = 174/290 (60.00%), Postives = 226/290 (77.93%), Query Frame = 3
Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDE-FLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDR-SKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQE 965
             V KAV+ALLKWR SQS+  KP+L ++DE ++YLI++LKKIP K+RVNP K+PLPH +    +E CL +DDR +K+ +TK  A  +I+SE+IP+NK++KLSKL +DY+PFEAKRKLCDSYD+FFA+K I+PLLPRLLGK FFKK+KIPVPVDLK  NWKEQ+  ACSSAMLF+ +GTC VV+VAK+ +E+ EIVENV+AAI G  E VP KWGN+RS HLKLL+SLALP++Q +PD++LKI        ++   K++ E +E D S  +    KK KGRIH+V+YMD  E
Sbjct:   10 TVSKAVDALLKWRRSQSETLKPKLFDEDEEYVYLILTLKKIPSKSRVNPHKIPLPHSLFSPFSEQCLILDDRPNKARVTKAQAQARIQSESIPVNKILKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKSFFKKRKIPVPVDLKKGNWKEQVEKACSSAMLFMRTGTCSVVRVAKVRMERDEIVENVVAAIEGAVEVVPKKWGNVRSLHLKLLESLALPVYQTVPDVKLKIDGFKVEEGATTTTKKKNETKEKD-SEGEVSDSKKKKGRIHEVRYMDEIE 298          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: V7BTD2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G055500g PE=4 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 2.694e-111
Identity = 168/306 (54.90%), Postives = 234/306 (76.47%), Query Frame = 3
Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQD-EFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDR-SKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQEHINDSNSEADRKHEIN 1013
             V KAV+ LLKWR SQS+ QKP+L +QD EF+YLIV+LKK+P K+RVNP K+PLPH ++ + +E CL +DDR +K+ +TK  A  +I+SE+IPI KV+KLSKL +DY+ FEAKRKLCDSYD+FF++K I+PLLPRLLGKQFFKK+K+PVPVDLK +NWKEQ+  ACSSAMLF+ +GTC VV+VAK+ +EK  IVENV+AA+ GI E VP KWGN+RS HLK+++S+ALP++Q +PD++L+I      +  ++ +++   +++D    +  KKK    GRIH+V+YMD     ++  +E     ++N
Sbjct:   10 TVSKAVDGLLKWRRSQSETQKPKLFDQDDEFVYLIVTLKKVPSKSRVNPYKIPLPHSLLSEFSEQCLILDDRPNKARVTKAQAQARIQSESIPIAKVLKLSKLASDYRAFEAKRKLCDSYDLFFSEKSIVPLLPRLLGKQFFKKRKLPVPVDLKKSNWKEQVEKACSSAMLFMRTGTCSVVRVAKVGMEKDSIVENVVAAVEGIVEVVPKKWGNVRSLHLKMMESVALPVYQVVPDVKLRI---EGANEQAEIKEKNKRKKKDGEVRESAKKK----GRIHEVRYMDESGGGDEIENELASDDKVN 308          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A078EG23_BRANA (BnaC06g16790D protein OS=Brassica napus GN=BnaC06g16790D PE=4 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 4.817e-111
Identity = 178/310 (57.42%), Postives = 225/310 (72.58%), Query Frame = 3
Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPII---DDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMD-NQEHINDSNSEADRKHEINAN 1019
             V +AV +LLKW+  +S+  KPQLLEQDEF+YLIV+LKKIPQ  R  P ++ LPHP+I   +D  ELCL IDDR KSG+TK+ A+KKIKS++IPI K++KLSKLKTDYK FEAKRKLCDSY+MFFAD+R+IPLLPRL+GK+FF  KKIP  VDLKH NWKEQI  AC SAM F+ +GTC VVKV KLS+E  EIVENV+A +NG+ E +P +W  +RS HLKL +SLALP++Q++PDL+LKI A     +      ++ E   D        K KK KGRIH+V+YMD N   + D +   D +  I + 
Sbjct:   24 TVHEAVTSLLKWKTEKSKLAKPQLLEQDEFVYLIVTLKKIPQTNRTKPHRILLPHPLINTEEDSPELCLIIDDRPKSGLTKEDAAKKIKSDDIPITKILKLSKLKTDYKAFEAKRKLCDSYEMFFADRRVIPLLPRLIGKKFFTSKKIPAAVDLKHRNWKEQIEKACGSAMFFVRTGTCSVVKVGKLSMEGDEIVENVMATLNGVVEVLPGQWKYVRSLHLKLSESLALPVYQSVPDLKLKIDAFGSEKS------KKGESVVDGGEKSDGVKGKKKKGRIHEVRYMDSNVSEVLDEDEIGDVEVSIESG 327          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: Q9LXT5_ARATH (Putative uncharacterized protein At3g58660 OS=Arabidopsis thaliana GN=T20N10_10 PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.415e-110
Identity = 176/292 (60.27%), Postives = 218/292 (74.66%), Query Frame = 3
Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIID---DPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHT---SSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDN 959
             VE A+N L+ WR  +S+ +KPQLLE+DE +YL V+LKKIPQK R N  ++PLPHP+I+   D  E+CL IDDR KSG+TKD A KKIKSENIPI KVIKLSKLK+DYK FEAKRKLCDSYDMFF D+RIIPLLPR++GK+FF  KKIPV +DLKH NWK QI  AC SAM F+ +GTC V+KV KLS++  EI ENV+A +NG+ E +P+KW  +RS HLKL +SLALP++Q++PDL+LKI A     +     KE + E     D      T K KK KGRIH+V+YMD+
Sbjct:   28 TVESALNGLINWRSDKSKTEKPQLLEEDELVYLFVTLKKIPQKTRTNAYRIPLPHPLINPTVDSPEICLIIDDRPKSGLTKDDAMKKIKSENIPITKVIKLSKLKSDYKAFEAKRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLKLSESLALPIYQSVPDLKLKIDAFGSGKSVVQEEKEGEVEEVVAVDGGEKSVTGKGKKKKGRIHEVRYMDS 319          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_PONAB (Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.842e-35
Identity = 82/235 (34.89%), Postives = 137/235 (58.30%), Query Frame = 3
Query:  105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGI--TKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            V KAV+ALL    S+ +     LL ++E L+L+V L KIP K     +++ LPH I  D  ++CLF  D   S    T+    K +    I  ++++I L  LK +YK +EAK +L  S+D F  D RI  LLP L+G+ F+++KK+PV V+L   N   +I++     +L +S SG+C  +++  + ++ + I+EN++A   G++E++P KW +++   +K   S ALP+F + 
Sbjct:   36 VRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSF 267          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_HUMAN (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.842e-35
Identity = 82/235 (34.89%), Postives = 137/235 (58.30%), Query Frame = 3
Query:  105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGI--TKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            V KAV+ALL    S+ +     LL ++E L+L+V L KIP K     +++ LPH I  D  ++CLF  D   S    T+    K +    I  ++++I L  LK +YK +EAK +L  S+D F  D RI  LLP L+G+ F+++KK+PV V+L   N   +I++     +L +S SG+C  +++  + ++ + I+EN++A   G++E++P KW +++   +K   S ALP+F + 
Sbjct:   36 VRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSF 267          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_MOUSE (Ribosomal L1 domain-containing protein 1 OS=Mus musculus GN=Rsl1d1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.145e-33
Identity = 73/212 (34.43%), Postives = 127/212 (59.91%), Query Frame = 3
Query:  171 LLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKI-KSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSS-GTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            LL   E L+L+V L KIP+K     +KVPLPH I+ + +++CLF  D   S    +   KK+ K   +  I+++I    LKT+YK +EAK +L  S+++F  D RI   LP  +G+ F+++KK+PV V+L   N  ++I+   +  +L +S  G+C  +++    +E + IV+N++A    ++E++P KW +++   LK   S++LP+F + 
Sbjct:   57 LLSGSENLFLMVILWKIPEKELR--VKVPLPHSILSESSDVCLFTKDEFDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLLGSFEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISKRGSCSTIRIGHTGMETEHIVDNILAVSEMLSEKLPEKWQSVKLLFLKTEKSVSLPIFSSF 266          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_BOVIN (Ribosomal L1 domain-containing protein 1 OS=Bos taurus GN=RSL1D1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.133e-33
Identity = 82/238 (34.45%), Postives = 134/238 (56.30%), Query Frame = 3
Query:   96 ELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRS--KSGITKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            E  V+KAV ALL    S+  A    LL ++E  +L+V L KIP K     +++ LPH I  D A++CLF  D     S  T+    K + +  I  I+++I    LK +YK +EAK +L  S+D F  D RI  LLP  LG+ F+ +KK+PV V+L+      +I++     +L +S SG+C  +++    +  + IVENV+A    +++++P KW +++   +K   S++LP+F + 
Sbjct:   31 EEQVKKAVEALLAHSRSRKNANG-LLLNENENFFLMVVLWKIPSKELR--VRLSLPHGIRSDLADVCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAYEAKLRLLGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTVLNISKSGSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTERSVSLPVFSSF 265          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1DB_SCHPO (Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC8F11.04 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.112e-28
Identity = 84/259 (32.43%), Postives = 140/259 (54.05%), Query Frame = 3
Query:   90 SSELNVEKAVNALLKWRDSQ-------SQAQKPQLLEQD----EFLYL-IVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDD--RSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAM--LFLSSGTCC--VVKVAKLSLEKKEIVENVIAAINGIAER-VPSKWGNIRSFHLKLLDSLALPLFQAMPDLR 809
             S+  +EK  +ALL++   +       S+++K  LLE +    E ++L + +LK I    ++ P K+ + +P+I   +E CL + D  R    +  +A   K+      + +VI LSKLK  +  +E KR+L D +D+F AD R+IP+LPR+LGK F++K K+PVPV +      EQ+     SA    + +S  C   ++K   +S    E+ ENV + +  +++  VP     I S HLK   S+A+PL+   P+L+
Sbjct:    8 GSDAPLEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYKIAIKNPVIPSSSEACLIVKDPQRVYKDLVNEAGLSKV------VTRVIGLSKLKAKWNSYEQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKISKGT-AEQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPLWNN-PNLK 258          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1DA_SCHPO (Putative ribosome biogenesis protein C306.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC306.07c PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.041e-16
Identity = 63/237 (26.58%), Postives = 120/237 (50.63%), Query Frame = 3
Query:  105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDL--KHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAER-VPSKWGNIRSFHLKLLDSLALPLFQAMPDL 806
            +EK + ALL+   S   + KP  +E+++    + + + + +++   P KV LPH I+    + CL + D  ++   +D   ++   E   I KV+ + +LK  YK    K +L DS+++F  D R++  +P L+GK F +KK  P P+ +  K    + Q+     S  L LS+GT   +     +   ++++EN+   +  +    +P  W  I +  +K  DS +LP++ +  +L
Sbjct:   22 LEKTIRALLQHIRS---SDKP--IEKEKVYIQVNTFQPVEKESLRRPSKVFLPHRIMH-VTDACLIVKDSQQT--YQDLVEQQGLDE--VITKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRVLKYIPLLMGKVFEQKKIKPFPISVLQKKETLRNQVARCLHSTYLKLSAGTSHTILCGLATQTNEQLLENITTVLKCLLTNFIPKGWSAIDNVAIKTADSASLPIWTSDTNL 248          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: Y3096_DROME (Ribosomal L1 domain-containing protein CG13096 OS=Drosophila melanogaster GN=CG13096 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.184e-9
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = 3
Query:  384 VIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWK--EQIHNACS-SAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK--LLDSLALPLFQAM 797
            V+  ++L+ +   FEAKRK  +SYD    D R+       LGK   K + +   + L  +N K  +++  A + +A   LS G    V V    +  +++ EN++  I  + E  P    NIRS +LK  +  + ALPL+ +M
Sbjct:  372 VVPFNQLRNEMGSFEAKRKFLNSYDYLLCDGRLSGQATAFLGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAFRQLSKGDLIAVPVGNHEITAEQLAENILLVIKQLQEVYPGGLANIRSMYLKIDITGTSALPLYVSM 514          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.252e-7
Identity = 31/103 (30.10%), Postives = 49/103 (47.57%), Query Frame = 3
Query:  450 SYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758
            +Y  F A   +I  +PRLLG    K  K P P++    N +E + +   S    L    C  V VA + + + EI  N++ AIN +   +   W N+R  ++K
Sbjct:  104 AYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN---KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIK 203          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.776e-7
Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 3
Query:  450 SYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLF-LSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758
            SY  F A + +I  +PRLLG    K  K P  V   H    E   N   + + F L    C  V V  LS+E+K++ +NV  ++N +   +   W N+R  +LK
Sbjct:  105 SYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.681e-7
Identity = 34/103 (33.01%), Postives = 49/103 (47.57%), Query Frame = 3
Query:  453 YDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLF-LSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758
            Y  F A + +I  +PRLLG    K  K P  V   H    E   N   + + F L    C  V V  LS+E+K+I +NV  ++N +   +   W N+R  +LK
Sbjct:  106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1KU61_SOYBN4.424e-11260.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2QYR0_GLYSO4.424e-11260.00Ribosomal L1 domain-containing protein 1 OS=Glycin... [more]
V7BTD2_PHAVU2.694e-11154.90Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A078EG23_BRANA4.817e-11157.42BnaC06g16790D protein OS=Brassica napus GN=BnaC06g... [more]
Q9LXT5_ARATH1.415e-11060.27Putative uncharacterized protein At3g58660 OS=Arab... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL1D1_PONAB1.842e-3534.89Ribosomal L1 domain-containing protein 1 OS=Pongo ... [more]
RL1D1_HUMAN1.842e-3534.89Ribosomal L1 domain-containing protein 1 OS=Homo s... [more]
RL1D1_MOUSE1.145e-3334.43Ribosomal L1 domain-containing protein 1 OS=Mus mu... [more]
RL1D1_BOVIN9.133e-3334.45Ribosomal L1 domain-containing protein 1 OS=Bos ta... [more]
RL1DB_SCHPO1.112e-2832.43Putative ribosome biogenesis protein C8F11.04 OS=S... [more]
RL1DA_SCHPO2.041e-1626.58Putative ribosome biogenesis protein C306.07c OS=S... [more]
Y3096_DROME1.184e-930.07Ribosomal L1 domain-containing protein CG13096 OS=... [more]
RL10A_CHLRE2.252e-730.1060S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
R10A2_ARATH2.776e-732.6960S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
R10A1_ARATH3.681e-733.0160S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 265..289
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 38..276
NoneNo IPR availablePANTHERPTHR23105:SF31RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1coord: 38..276
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwichGENE3D3.30.190.20coord: 192..235
e-value: 1.1E-4
score: 21.4
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 41..239
e-value: 7.0E-62
score: 208.6
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 94..178
e-value: 1.1E-14
score: 53.8
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 20..245

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0012685 ID=g.arboreum_cottongen_reftransV1_0012685; Name=g.arboreum_cottongen_reftransV1_0012685; organism=Gossypium arboreum; type=contig; length=1356bp
CGGCAGGGGAAAAAGTGAATAAAACCCTAGCAAAATAGAAAGAAAGAAGG
AAGATGGCGAAGAACATGGGAGTAGCGGGAGCGGCTGCTTCATCCGAATT
GAATGTGGAGAAGGCTGTGAATGCTCTGCTCAAATGGAGAGATTCTCAGT
CCCAAGCCCAAAAACCCCAACTTCTTGAACAGGATGAATTCCTATATCTC
ATCGTCAGCCTCAAGAAAATCCCTCAGAAGGCTCGCGTTAACCCCATCAA
AGTCCCTCTCCCTCACCCCATCATCGATGATCCCGCCGAGCTTTGCTTAT
TCATCGATGACCGCTCCAAGTCTGGTATCACAAAAGACGCTGCGTCTAAG
AAAATCAAGTCGGAAAACATACCCATCAACAAGGTCATTAAGCTGTCCAA
GCTCAAGACTGATTATAAGCCCTTCGAGGCCAAAAGGAAGCTTTGTGATT
CATATGATATGTTTTTCGCTGATAAGAGAATTATCCCACTTCTGCCTCGG
TTATTGGGGAAGCAGTTTTTCAAGAAGAAGAAGATTCCAGTGCCTGTTGA
CCTTAAGCATAACAACTGGAAGGAGCAGATCCATAATGCTTGTTCCTCTG
CTATGTTGTTCTTGAGTAGCGGGACTTGCTGTGTGGTGAAGGTGGCGAAG
CTTTCGTTGGAAAAGAAGGAGATTGTTGAAAACGTGATTGCTGCTATTAA
TGGGATTGCAGAGCGTGTGCCGAGCAAGTGGGGTAATATCAGGTCGTTTC
ATTTGAAGTTGCTCGATAGCTTGGCTTTACCTCTTTTTCAAGCTATGCCT
GATTTGCGTTTGAAGATTCTCGCTGATGCTGATCACCATACTTCTTCCAA
GGAGGAAAAACAAGAAGTTGAAGAAGAGGAAGACGATGCTTCCCATCAGA
AGACGAAGAAAAAGAAGAAAAACAAGGGGAGGATACACGACGTTCAGTAC
ATGGATAATCAAGAACATATTAATGACTCTAACTCTGAGGCTGATAGAAA
ACATGAAATCAATGCGAATATCTCAACCAAGAAAAAGAAGACTGCACTAA
AAAAGTTATGCCCTATTGACATCAAGGTCAAGGATAAGAAAAAGAAGAAA
AGTTTAGCAGCTTAATGATTTTTCTTACTTAGCACCTAGTAAACTTTAAG
TTCAATTTTACTGCTTCTTGTTCTTCCGGATTAGTACTCATTATTGTTTC
TTTTGTAATTGGTTTTACCTTTCAATTTTGGGTTGTTCTTGATCTTTTGA
AGGTCTATGTTATTTTTGAATGCTTCTTTACTTAGCTTTTTATTTGTATT
AGATTGTTAAGAATGAATTTGGAGCATGATTGCTGTAAGCAGCATTTGAA
TCTGAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR016094Ribosomal_L1_2-a/b-sand
IPR028364Ribosomal_uL1/biogenesis
IPR016095Ribosomal_uL1_3-a/b-sand
IPR023674Ribosomal_uL1-like
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding