g.arboreum_cottongen_reftransV1_0012685, g.arboreum_cottongen_reftransV1_0012685 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: I1KU61_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 4.424e-112 Identity = 174/290 (60.00%), Postives = 226/290 (77.93%), Query Frame = 3 Query: 102 NVEKAVNALLKWRDSQSQAQKPQLLEQDE-FLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDR-SKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQE 965 V KAV+ALLKWR SQS+ KP+L ++DE ++YLI++LKKIP K+RVNP K+PLPH + +E CL +DDR +K+ +TK A +I+SE+IP+NK++KLSKL +DY+PFEAKRKLCDSYD+FFA+K I+PLLPRLLGK FFKK+KIPVPVDLK NWKEQ+ ACSSAMLF+ +GTC VV+VAK+ +E+ EIVENV+AAI G E VP KWGN+RS HLKLL+SLALP++Q +PD++LKI ++ K++ E +E D S + KK KGRIH+V+YMD E Sbjct: 10 TVSKAVDALLKWRRSQSETLKPKLFDEDEEYVYLILTLKKIPSKSRVNPHKIPLPHSLFSPFSEQCLILDDRPNKARVTKAQAQARIQSESIPVNKILKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKSFFKKRKIPVPVDLKKGNWKEQVEKACSSAMLFMRTGTCSVVRVAKVRMERDEIVENVVAAIEGAVEVVPKKWGNVRSLHLKLLESLALPVYQTVPDVKLKIDGFKVEEGATTTTKKKNETKEKD-SEGEVSDSKKKKGRIHEVRYMDEIE 298
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A0B2QYR0_GLYSO (Ribosomal L1 domain-containing protein 1 OS=Glycine soja GN=glysoja_011393 PE=4 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 4.424e-112 Identity = 174/290 (60.00%), Postives = 226/290 (77.93%), Query Frame = 3 Query: 102 NVEKAVNALLKWRDSQSQAQKPQLLEQDE-FLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDR-SKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQE 965 V KAV+ALLKWR SQS+ KP+L ++DE ++YLI++LKKIP K+RVNP K+PLPH + +E CL +DDR +K+ +TK A +I+SE+IP+NK++KLSKL +DY+PFEAKRKLCDSYD+FFA+K I+PLLPRLLGK FFKK+KIPVPVDLK NWKEQ+ ACSSAMLF+ +GTC VV+VAK+ +E+ EIVENV+AAI G E VP KWGN+RS HLKLL+SLALP++Q +PD++LKI ++ K++ E +E D S + KK KGRIH+V+YMD E Sbjct: 10 TVSKAVDALLKWRRSQSETLKPKLFDEDEEYVYLILTLKKIPSKSRVNPHKIPLPHSLFSPFSEQCLILDDRPNKARVTKAQAQARIQSESIPVNKILKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKSFFKKRKIPVPVDLKKGNWKEQVEKACSSAMLFMRTGTCSVVRVAKVRMERDEIVENVVAAIEGAVEVVPKKWGNVRSLHLKLLESLALPVYQTVPDVKLKIDGFKVEEGATTTTKKKNETKEKD-SEGEVSDSKKKKGRIHEVRYMDEIE 298
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: V7BTD2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G055500g PE=4 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 2.694e-111 Identity = 168/306 (54.90%), Postives = 234/306 (76.47%), Query Frame = 3 Query: 102 NVEKAVNALLKWRDSQSQAQKPQLLEQD-EFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDR-SKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQEHINDSNSEADRKHEIN 1013 V KAV+ LLKWR SQS+ QKP+L +QD EF+YLIV+LKK+P K+RVNP K+PLPH ++ + +E CL +DDR +K+ +TK A +I+SE+IPI KV+KLSKL +DY+ FEAKRKLCDSYD+FF++K I+PLLPRLLGKQFFKK+K+PVPVDLK +NWKEQ+ ACSSAMLF+ +GTC VV+VAK+ +EK IVENV+AA+ GI E VP KWGN+RS HLK+++S+ALP++Q +PD++L+I + ++ +++ +++D + KKK GRIH+V+YMD ++ +E ++N Sbjct: 10 TVSKAVDGLLKWRRSQSETQKPKLFDQDDEFVYLIVTLKKVPSKSRVNPYKIPLPHSLLSEFSEQCLILDDRPNKARVTKAQAQARIQSESIPIAKVLKLSKLASDYRAFEAKRKLCDSYDLFFSEKSIVPLLPRLLGKQFFKKRKLPVPVDLKKSNWKEQVEKACSSAMLFMRTGTCSVVRVAKVGMEKDSIVENVVAAVEGIVEVVPKKWGNVRSLHLKMMESVALPVYQVVPDVKLRI---EGANEQAEIKEKNKRKKKDGEVRESAKKK----GRIHEVRYMDESGGGDEIENELASDDKVN 308
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A078EG23_BRANA (BnaC06g16790D protein OS=Brassica napus GN=BnaC06g16790D PE=4 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 4.817e-111 Identity = 178/310 (57.42%), Postives = 225/310 (72.58%), Query Frame = 3 Query: 102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPII---DDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMD-NQEHINDSNSEADRKHEINAN 1019 V +AV +LLKW+ +S+ KPQLLEQDEF+YLIV+LKKIPQ R P ++ LPHP+I +D ELCL IDDR KSG+TK+ A+KKIKS++IPI K++KLSKLKTDYK FEAKRKLCDSY+MFFAD+R+IPLLPRL+GK+FF KKIP VDLKH NWKEQI AC SAM F+ +GTC VVKV KLS+E EIVENV+A +NG+ E +P +W +RS HLKL +SLALP++Q++PDL+LKI A + ++ E D K KK KGRIH+V+YMD N + D + D + I + Sbjct: 24 TVHEAVTSLLKWKTEKSKLAKPQLLEQDEFVYLIVTLKKIPQTNRTKPHRILLPHPLINTEEDSPELCLIIDDRPKSGLTKEDAAKKIKSDDIPITKILKLSKLKTDYKAFEAKRKLCDSYEMFFADRRVIPLLPRLIGKKFFTSKKIPAAVDLKHRNWKEQIEKACGSAMFFVRTGTCSVVKVGKLSMEGDEIVENVMATLNGVVEVLPGQWKYVRSLHLKLSESLALPVYQSVPDLKLKIDAFGSEKS------KKGESVVDGGEKSDGVKGKKKKGRIHEVRYMDSNVSEVLDEDEIGDVEVSIESG 327
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: Q9LXT5_ARATH (Putative uncharacterized protein At3g58660 OS=Arabidopsis thaliana GN=T20N10_10 PE=2 SV=1) HSP 1 Score: 345.51 bits (885), Expect = 1.415e-110 Identity = 176/292 (60.27%), Postives = 218/292 (74.66%), Query Frame = 3 Query: 102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIID---DPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHT---SSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDN 959 VE A+N L+ WR +S+ +KPQLLE+DE +YL V+LKKIPQK R N ++PLPHP+I+ D E+CL IDDR KSG+TKD A KKIKSENIPI KVIKLSKLK+DYK FEAKRKLCDSYDMFF D+RIIPLLPR++GK+FF KKIPV +DLKH NWK QI AC SAM F+ +GTC V+KV KLS++ EI ENV+A +NG+ E +P+KW +RS HLKL +SLALP++Q++PDL+LKI A + KE + E D T K KK KGRIH+V+YMD+ Sbjct: 28 TVESALNGLINWRSDKSKTEKPQLLEEDELVYLFVTLKKIPQKTRTNAYRIPLPHPLINPTVDSPEICLIIDDRPKSGLTKDDAMKKIKSENIPITKVIKLSKLKSDYKAFEAKRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLKLSESLALPIYQSVPDLKLKIDAFGSGKSVVQEEKEGEVEEVVAVDGGEKSVTGKGKKKKGRIHEVRYMDS 319
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_PONAB (Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 1.842e-35 Identity = 82/235 (34.89%), Postives = 137/235 (58.30%), Query Frame = 3 Query: 105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGI--TKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797 V KAV+ALL S+ + LL ++E L+L+V L KIP K +++ LPH I D ++CLF D S T+ K + I ++++I L LK +YK +EAK +L S+D F D RI LLP L+G+ F+++KK+PV V+L N +I++ +L +S SG+C +++ + ++ + I+EN++A G++E++P KW +++ +K S ALP+F + Sbjct: 36 VRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSF 267
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_HUMAN (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3) HSP 1 Score: 141.354 bits (355), Expect = 1.842e-35 Identity = 82/235 (34.89%), Postives = 137/235 (58.30%), Query Frame = 3 Query: 105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGI--TKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797 V KAV+ALL S+ + LL ++E L+L+V L KIP K +++ LPH I D ++CLF D S T+ K + I ++++I L LK +YK +EAK +L S+D F D RI LLP L+G+ F+++KK+PV V+L N +I++ +L +S SG+C +++ + ++ + I+EN++A G++E++P KW +++ +K S ALP+F + Sbjct: 36 VRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSF 267
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_MOUSE (Ribosomal L1 domain-containing protein 1 OS=Mus musculus GN=Rsl1d1 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.145e-33 Identity = 73/212 (34.43%), Postives = 127/212 (59.91%), Query Frame = 3 Query: 171 LLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKI-KSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSS-GTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797 LL E L+L+V L KIP+K +KVPLPH I+ + +++CLF D S + KK+ K + I+++I LKT+YK +EAK +L S+++F D RI LP +G+ F+++KK+PV V+L N ++I+ + +L +S G+C +++ +E + IV+N++A ++E++P KW +++ LK S++LP+F + Sbjct: 57 LLSGSENLFLMVILWKIPEKELR--VKVPLPHSILSESSDVCLFTKDEFDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLLGSFEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISKRGSCSTIRIGHTGMETEHIVDNILAVSEMLSEKLPEKWQSVKLLFLKTEKSVSLPIFSSF 266
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_BOVIN (Ribosomal L1 domain-containing protein 1 OS=Bos taurus GN=RSL1D1 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 9.133e-33 Identity = 82/238 (34.45%), Postives = 134/238 (56.30%), Query Frame = 3 Query: 96 ELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRS--KSGITKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797 E V+KAV ALL S+ A LL ++E +L+V L KIP K +++ LPH I D A++CLF D S T+ K + + I I+++I LK +YK +EAK +L S+D F D RI LLP LG+ F+ +KK+PV V+L+ +I++ +L +S SG+C +++ + + IVENV+A +++++P KW +++ +K S++LP+F + Sbjct: 31 EEQVKKAVEALLAHSRSRKNANG-LLLNENENFFLMVVLWKIPSKELR--VRLSLPHGIRSDLADVCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAYEAKLRLLGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTVLNISKSGSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTERSVSLPVFSSF 265
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1DB_SCHPO (Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC8F11.04 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.112e-28 Identity = 84/259 (32.43%), Postives = 140/259 (54.05%), Query Frame = 3 Query: 90 SSELNVEKAVNALLKWRDSQ-------SQAQKPQLLEQD----EFLYL-IVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDD--RSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAM--LFLSSGTCC--VVKVAKLSLEKKEIVENVIAAINGIAER-VPSKWGNIRSFHLKLLDSLALPLFQAMPDLR 809 S+ +EK +ALL++ + S+++K LLE + E ++L + +LK I ++ P K+ + +P+I +E CL + D R + +A K+ + +VI LSKLK + +E KR+L D +D+F AD R+IP+LPR+LGK F++K K+PVPV + EQ+ SA + +S C ++K +S E+ ENV + + +++ VP I S HLK S+A+PL+ P+L+ Sbjct: 8 GSDAPLEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYKIAIKNPVIPSSSEACLIVKDPQRVYKDLVNEAGLSKV------VTRVIGLSKLKAKWNSYEQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKISKGT-AEQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPLWNN-PNLK 258
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1DA_SCHPO (Putative ribosome biogenesis protein C306.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC306.07c PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.041e-16 Identity = 63/237 (26.58%), Postives = 120/237 (50.63%), Query Frame = 3 Query: 105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDL--KHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAER-VPSKWGNIRSFHLKLLDSLALPLFQAMPDL 806 +EK + ALL+ S + KP +E+++ + + + + +++ P KV LPH I+ + CL + D ++ +D ++ E I KV+ + +LK YK K +L DS+++F D R++ +P L+GK F +KK P P+ + K + Q+ S L LS+GT + + ++++EN+ + + +P W I + +K DS +LP++ + +L Sbjct: 22 LEKTIRALLQHIRS---SDKP--IEKEKVYIQVNTFQPVEKESLRRPSKVFLPHRIMH-VTDACLIVKDSQQT--YQDLVEQQGLDE--VITKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRVLKYIPLLMGKVFEQKKIKPFPISVLQKKETLRNQVARCLHSTYLKLSAGTSHTILCGLATQTNEQLLENITTVLKCLLTNFIPKGWSAIDNVAIKTADSASLPIWTSDTNL 248
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: Y3096_DROME (Ribosomal L1 domain-containing protein CG13096 OS=Drosophila melanogaster GN=CG13096 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.184e-9 Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = 3 Query: 384 VIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWK--EQIHNACS-SAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK--LLDSLALPLFQAM 797 V+ ++L+ + FEAKRK +SYD D R+ LGK K + + + L +N K +++ A + +A LS G V V + +++ EN++ I + E P NIRS +LK + + ALPL+ +M Sbjct: 372 VVPFNQLRNEMGSFEAKRKFLNSYDYLLCDGRLSGQATAFLGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAFRQLSKGDLIAVPVGNHEITAEQLAENILLVIKQLQEVYPGGLANIRSMYLKIDITGTSALPLYVSM 514
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 2.252e-7 Identity = 31/103 (30.10%), Postives = 49/103 (47.57%), Query Frame = 3 Query: 450 SYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758 +Y F A +I +PRLLG K K P P++ N +E + + S L C V VA + + + EI N++ AIN + + W N+R ++K Sbjct: 104 AYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN---KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIK 203
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 2.776e-7 Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 3 Query: 450 SYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLF-LSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758 SY F A + +I +PRLLG K K P V H E N + + F L C V V LS+E+K++ +NV ++N + + W N+R +LK Sbjct: 105 SYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 3.681e-7 Identity = 34/103 (33.01%), Postives = 49/103 (47.57%), Query Frame = 3 Query: 453 YDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLF-LSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758 Y F A + +I +PRLLG K K P V H E N + + F L C V V LS+E+K+I +NV ++N + + W N+R +LK Sbjct: 106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 11
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0012685 ID=g.arboreum_cottongen_reftransV1_0012685; Name=g.arboreum_cottongen_reftransV1_0012685; organism=Gossypium arboreum; type=contig; length=1356bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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