g.arboreum_cottongen_reftransV1_0012685, g.arboreum_cottongen_reftransV1_0012685 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0012685
Unique Name	g.arboreum_cottongen_reftransV1_0012685
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr11	chromosome	g.arboreum_cottongen_reftransV1_0012685:1..1356 . Chr11:103808052..103809407 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: U5FMM2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12760g PE=4 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 7.271e-116
Identity = 180/290 (62.07%), Postives = 224/290 (77.24%), Query Frame = 3

Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKA--RVNPIKVPLPH----PIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYM 953
             VEKAVNALLKWR S    QKPQLLEQDEF YLI++LKKIPQK   R+N  K+PLP+    P+I+ P E+CL IDDR KSG+ KDAA KKI+++N+PI+K+IK+SKLKTDY+PFEAKRKL DSYDMFFADKR++PLLP++LGKQFFKKKKIPV +DLKH+NWKEQI  AC SA+L+L SGTC VVKV ++S+ ++EI +NV+AAINGIA+ VP KWG +RSFHLKLLDSLALP++Q +PD +LKI        + +      EE+  +          K KGRI +V+YM
Sbjct:   16 TVEKAVNALLKWRSSTLNTQKPQLLEQDEFFYLILTLKKIPQKGVSRINAHKIPLPNSLINPLIEAP-EICLIIDDRPKSGLNKDAAKKKIQNDNLPISKIIKVSKLKTDYRPFEAKRKLRDSYDMFFADKRVVPLLPKMLGKQFFKKKKIPVTLDLKHHNWKEQIDKACGSALLYLRSGTCSVVKVGRVSMSREEIAKNVMAAINGIADIVPRKWGGVRSFHLKLLDSLALPVYQVVPDSKLKIDGGPKEQENDEGVVSVEEEKAKEGR------VGKKKGRIQEVRYM 298

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A059A169_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01212 PE=4 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 3.834e-115
Identity = 177/292 (60.62%), Postives = 227/292 (77.74%), Query Frame = 3

Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIID-DPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDD--ASHQXXXXXXXXXGRIHDVQYMDNQEH 968
             VE+AV ALLKWRD++S+ QK  LLE D+F+YLI++LKKIP  AR NP K+PLPHP +D   AE CL IDDR KSG+TKDAA KKIK++ +P+ KV+KLSKL+T+Y+PFEAKRKLCDSYD+F AD+R++ +LPRLLGKQFF+K+KIPV VDL+H +WKEQ+   CSSA+LF+ +GTC V+KV ++S+ K+EI  NV AA+ G+AE VP KW N+RSFHLKLLDSLALP++QA+PD++LKI    D      EE +E  E E++   S    KKK   KGRIH+V+YMD   H
Sbjct:   22 TVERAVQALLKWRDAKSKTQKASLLEPDDFVYLILTLKKIPAAARTNPFKIPLPHPPLDPAAAEACLIIDDRPKSGLTKDAAQKKIKADGVPVAKVLKLSKLRTNYRPFEAKRKLCDSYDLFLADRRVVGMLPRLLGKQFFRKRKIPVGVDLRHKSWKEQVERVCSSALLFVGTGTCSVLKVGRVSMGKEEIAANVAAALEGVAEAVPRKWRNVRSFHLKLLDSLALPIYQALPDVKLKIEGRKDKEEVEAEEGKEGNEVEEEGKGSKSAGKKKGAKKGRIHEVRYMDTNMH 313

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A0A0KML2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154220 PE=4 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 4.980e-115
Identity = 181/326 (55.52%), Postives = 244/326 (74.85%), Query Frame = 3

Query:   66 MGVAGAAASSELNVE---KAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXD--DASHQXXXXXXXXXGRIHDVQYMD-NQEHINDSNSEADRKH-EINANI 1022
            M +A    ++++  E   KAV +LL+WR+S+ +  KPQL +Q++FLYLIV+LKKIP K R NP K+PLPH +  D +ELCL IDDR+KS +TKD A KKI+SENIPI+KVIKLSKLK+DY+PFEAKRKLCDSYDMFFAD R+IPLLP LLGK F+KKKKIPVP++L+H NWKEQ+  +CSS +L+L +GTC VVKVA+ S+E +EIV+NVIAAI+GIAE VP KW N+RSF LK+L+S+ALP++Q +P+L+ KI A          +++E  +         +K +K  K KGRIH+++YMD N   +++ +  +D    E+N N+
Sbjct:    1 MALADVTPTTKVRRETAAKAVESLLQWRNSKRE--KPQLFDQEDFLYLIVTLKKIPPKGRTNPYKIPLPHSLHSDSSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQVERSCSSGLLYLRTGTCSVVKVARTSMEVEEIVDNVIAAIDGIAEVVPKKWSNVRSFFLKVLESIALPIYQTVPELKFKIEAGVKGKEDEITKEEEAAKSPTPVKVGSKKERKLSKKKGRIHEIRYMDTNGRELSNEDEGSDLDDVEVNENL 324

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: M5WRW3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005319mg PE=4 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 1.455e-114
Identity = 181/287 (63.07%), Postives = 221/287 (77.00%), Query Frame = 3

Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKI-LADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDN 959
             V KAVNALLKWR+S+ Q +KP LLE DEF YL+++LKKIP KAR+N  KVPLP+P+    +ELCL  DD  KS +TKD   KKIK+ENIPI+K++KLSKLKTDY PFEAKRKL  SYDMF AD+RI+PLLP+ LGKQFFKKKKIPVPVDL+H NWKEQ+  AC SA+LFLS+GTC VV+VAK+S+   EIVENV+AAINGI E VP KW ++RSFHLK L+SLALP++QA+PDL LKI  A +D     + +K    E +   S +      K KGRIH+V+YMD+
Sbjct:   22 TVRKAVNALLKWRNSKLQTEKPDLLESDEFAYLVLTLKKIPPKARINAYKVPLPNPLHSQLSELCLIYDDGPKSNLTKDFIQKKIKAENIPISKILKLSKLKTDYVPFEAKRKLLYSYDMFLADRRIVPLLPKYLGKQFFKKKKIPVPVDLEHKNWKEQVDKACGSALLFLSTGTCSVVRVAKVSMSVDEIVENVLAAINGIVEIVPKKWRDVRSFHLKFLESLALPVYQAVPDLTLKIEGAKSDEEGKEEVKKVVKSESKSLKSEK----VSKKKGRIHEVRYMDS 304

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: I1MJ53_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 5.451e-113
Identity = 180/298 (60.40%), Postives = 236/298 (79.19%), Query Frame = 3

Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDE-FLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDR-SKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQEHINDSNSE 989
             V KAV+ALL+WR SQS+ QKP+LL +DE F+YLI++LKKIP K+RVNP K+PLPH +I   +E CL +DDR +K+ +TK  A  KI+SE+IP++KV+KLSKL +DY+PFEAKRKLCDSYD+FFA+K I+PLLPRLLGK FFKK+KIPVPVDLK  +WKEQ+  ACSSAMLF+ +GTC VV+VAK+ +E+ EIVENV+AAI GI E VP KWGN+RS HLKLL+S+ALP++Q +PD++LKI          K+ ++E + E  D+    T+KKKK KGRIH+V+YMD  E++ ++  E
Sbjct:   10 TVSKAVDALLQWRRSQSEIQKPKLLGEDEEFVYLILTLKKIPSKSRVNPHKIPLPHSLISPFSEQCLILDDRPNKARVTKAQAQAKIQSESIPVHKVLKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKSFFKKRKIPVPVDLKKGSWKEQVERACSSAMLFMRTGTCSVVRVAKVRMERDEIVENVVAAIEGIVEVVPKKWGNVRSLHLKLLESVALPVYQTVPDVKLKI---EGFKVEEKKNEKERDGEVSDSIEGGTEKKKKKKGRIHEVRYMD--ENVVEAGME 302

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: M5WQ16_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016535mg PE=4 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 8.289e-113
Identity = 177/293 (60.41%), Postives = 221/293 (75.43%), Query Frame = 3

Query:   84 AASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKI-LADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDN 959
            A+     V+KAVN+LLKWR+S+ Q +KP LLE DEF YL+++LKKIP KARVN  KVPLP+P+    +ELCL  DD  KS +TKD   KKIK+ENIPI+K++KLSKLK+ Y PFEAKRKL  SYDMF  D+RI+PLLP+ LGKQFFKKKKIPVPVDL+H NWKEQ+  AC SA+LF+S+GTC VV+VAK+S+   EIVENV+AAINGI E VP KW ++RSFHLK L+SLALP++QA+PDL LKI  A +D       ++    E +   S +      K KGRIH+V+YMD+
Sbjct:    2 ASVGSSTVQKAVNSLLKWRNSKLQTEKPDLLESDEFAYLVLTLKKIPPKARVNAYKVPLPNPLHSQLSELCLIYDDGPKSNLTKDFIQKKIKAENIPISKILKLSKLKSAYVPFEAKRKLLHSYDMFLVDRRIVPLLPKYLGKQFFKKKKIPVPVDLEHKNWKEQVDRACESALLFMSTGTCSVVRVAKVSMSVDEIVENVVAAINGIVEIVPKKWRDVRSFHLKFLESLALPVYQAVPDLTLKIEGAKSDEDGKEAVKEVVKSESKGLKSEK----VSKKKGRIHEVRYMDS 290

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: I3SBI9_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 9.837e-113
Identity = 175/290 (60.34%), Postives = 224/290 (77.24%), Query Frame = 3

Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDE-FLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSK--SGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQ 962
             V KAV++LLKWR S+ + +KP+L ++DE F+YLI++LKKIP K RVNP K+P+PH +I   +E CL IDDR+   S ITKD A KK++SE+IPI+K++KLSKL TDY+PFEAKRKLC+SYD+FFADK I+PLLPRLLGKQFFKK+KIPV VDL+  NWKEQI  ACSSA+LFL +GTC VVKVAKLS+E+ EIVENV+AA+ G+ E +P KW  +RSFH+KLL+SLALP++QA+PD+RLKI    D             +   D    K  KK K KGRIH+++YMD++
Sbjct:   10 TVAKAVDSLLKWRKSRLETEKPKLFDEDEEFVYLILTLKKIPSKGRVNPHKIPIPHSLISAASEQCLIIDDRANKPSRITKDEAQKKVQSESIPISKILKLSKLMTDYRPFEAKRKLCNSYDLFFADKAIVPLLPRLLGKQFFKKRKIPVQVDLQKKNWKEQIEKACSSALLFLRTGTCSVVKVAKLSMERDEIVENVVAAMEGVVEVLPKKWAVVRSFHVKLLESLALPVYQAVPDVRLKIEGVKDLED----------KLVKDEKKVKDAKKSKKKGRIHEIKYMDDR 289

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A072V9B4_MEDTR (Ribosomal protein L1p/L10e family protein OS=Medicago truncatula GN=MTR_2g064460 PE=4 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 1.032e-112
Identity = 175/290 (60.34%), Postives = 224/290 (77.24%), Query Frame = 3

Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDE-FLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSK--SGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQ 962
             V KAV++LLKWR S+ + +KP+L ++DE F+YLI++LKKIP K RVNP K+P+PH +I   +E CL IDDR+   S ITKD A KK++SE+IPI+K++KLSKL TDY+PFEAKRKLC+SYD+FFADK I+PLLPRLLGKQFFKK+KIPV VDL+  NWKEQI  ACSSA+LFL +GTC VVKVAKLS+E+ EIVENV+AA+ G+ E +P KW  +RSFH+KLL+SLALP++QA+PD+RLKI    D             +   D    K  KK K KGRIH+++YMD++
Sbjct:   10 TVAKAVDSLLKWRKSRLETEKPKLFDEDEEFVYLILTLKKIPSKGRVNPHKIPIPHSLISAASEQCLIIDDRANKPSRITKDEAQKKVQSESIPISKILKLSKLMTDYRPFEAKRKLCNSYDLFFADKAIVPLLPRLLGKQFFKKRKIPVQVDLQKKNWKEQIEKACSSALLFLRTGTCSVVKVAKLSMERDEIVENVVAAMEGVVEVLPKKWAVVRSFHVKLLESLALPVYQAVPDVRLKIEGVKDLED----------KLVKDEKKVKDAKKSKKKGRIHEIKYMDDR 289

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: G7IGY3_MEDTR (Ribosomal protein L1p/L10e family protein OS=Medicago truncatula GN=MTR_2g064460 PE=4 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 2.115e-112
Identity = 175/290 (60.34%), Postives = 224/290 (77.24%), Query Frame = 3

Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDE-FLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSK--SGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQ 962
             V KAV++LLKWR S+ + +KP+L ++DE F+YLI++LKKIP K RVNP K+P+PH +I   +E CL IDDR+   S ITKD A KK++SE+IPI+K++KLSKL TDY+PFEAKRKLC+SYD+FFADK I+PLLPRLLGKQFFKK+KIPV VDL+  NWKEQI  ACSSA+LFL +GTC VVKVAKLS+E+ EIVENV+AA+ G+ E +P KW  +RSFH+KLL+SLALP++QA+PD+RLKI    D             +   D    K  KK K KGRIH+++YMD++
Sbjct:   10 TVAKAVDSLLKWRKSRLETEKPKLFDEDEEFVYLILTLKKIPSKGRVNPHKIPIPHSLISAASEQCLIIDDRANKPSRITKDEAQKKVQSESIPISKILKLSKLMTDYRPFEAKRKLCNSYDLFFADKAIVPLLPRLLGKQFFKKRKIPVQVDLQKKNWKEQIEKACSSALLFLRTGTCSVVKVAKLSMERDEIVENVVAAMEGVVEVLPKKWAVVRSFHVKLLESLALPVYQAVPDVRLKIEGVKDLED----------KLVKDEKKVKDAKKSKKKGRIHEIKYMDDR 289

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A0B2R6I9_GLYSO (Ribosomal L1 domain-containing protein 1 OS=Glycine soja GN=glysoja_025554 PE=4 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 2.240e-112
Identity = 180/298 (60.40%), Postives = 236/298 (79.19%), Query Frame = 3

Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDE-FLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDR-SKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQEHINDSNSE 989
             V KAV+ALLKWR SQS+ QKP+LL +DE F+YLI++LKKIP K+RVNP K+PLPH +I   +E CL +DDR +K+ +TK  A  KI+SE+IP++KV+KLSKL +DY+PFEAKRKLCDSYD+FFA+K I+PLLPRLLGK FFKK+KIPVPVDLK  +WKEQ+  ACSSAMLF+ +GTC VV+VAK+ +E+ EIVENV+AAI GI E VP KWGN+RS HLKLL+S+ALP++Q +PD++LKI          K++++E + E  D S +   +KKK KGRIH+V+YMD  E++ ++  E
Sbjct:   10 TVSKAVDALLKWRRSQSEIQKPKLLGEDEEFVYLILTLKKIPSKSRVNPHKIPLPHSLISPFSEQCLILDDRPNKARVTKAQAQAKIQSESIPVHKVLKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKSFFKKRKIPVPVDLKKGSWKEQVERACSSAMLFMRTGTCSVVRVAKVRMERDEIVENVVAAIEGIVEVVPKKWGNVRSLHLKLLESVALPVYQTVPDVKLKI---EGFKVEEKKKEKERDGEVSD-SIEGGTEKKKKKGRIHEVRYMD--ENVVEAGME 301

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_PONAB (Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.842e-35
Identity = 82/235 (34.89%), Postives = 137/235 (58.30%), Query Frame = 3

Query:  105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGI--TKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            V KAV+ALL    S+ +     LL ++E L+L+V L KIP K     +++ LPH I  D  ++CLF  D   S    T+    K +    I  ++++I L  LK +YK +EAK +L  S+D F  D RI  LLP L+G+ F+++KK+PV V+L   N   +I++     +L +S SG+C  +++  + ++ + I+EN++A   G++E++P KW +++   +K   S ALP+F + 
Sbjct:   36 VRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSF 267

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_HUMAN (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.842e-35
Identity = 82/235 (34.89%), Postives = 137/235 (58.30%), Query Frame = 3

Query:  105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGI--TKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            V KAV+ALL    S+ +     LL ++E L+L+V L KIP K     +++ LPH I  D  ++CLF  D   S    T+    K +    I  ++++I L  LK +YK +EAK +L  S+D F  D RI  LLP L+G+ F+++KK+PV V+L   N   +I++     +L +S SG+C  +++  + ++ + I+EN++A   G++E++P KW +++   +K   S ALP+F + 
Sbjct:   36 VRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSF 267

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_MOUSE (Ribosomal L1 domain-containing protein 1 OS=Mus musculus GN=Rsl1d1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.145e-33
Identity = 73/212 (34.43%), Postives = 127/212 (59.91%), Query Frame = 3

Query:  171 LLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKI-KSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSS-GTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            LL   E L+L+V L KIP+K     +KVPLPH I+ + +++CLF  D   S    +   KK+ K   +  I+++I    LKT+YK +EAK +L  S+++F  D RI   LP  +G+ F+++KK+PV V+L   N  ++I+   +  +L +S  G+C  +++    +E + IV+N++A    ++E++P KW +++   LK   S++LP+F + 
Sbjct:   57 LLSGSENLFLMVILWKIPEKELR--VKVPLPHSILSESSDVCLFTKDEFDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLLGSFEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISKRGSCSTIRIGHTGMETEHIVDNILAVSEMLSEKLPEKWQSVKLLFLKTEKSVSLPIFSSF 266

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_BOVIN (Ribosomal L1 domain-containing protein 1 OS=Bos taurus GN=RSL1D1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.133e-33
Identity = 82/238 (34.45%), Postives = 134/238 (56.30%), Query Frame = 3

Query:   96 ELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRS--KSGITKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            E  V+KAV ALL    S+  A    LL ++E  +L+V L KIP K     +++ LPH I  D A++CLF  D     S  T+    K + +  I  I+++I    LK +YK +EAK +L  S+D F  D RI  LLP  LG+ F+ +KK+PV V+L+      +I++     +L +S SG+C  +++    +  + IVENV+A    +++++P KW +++   +K   S++LP+F + 
Sbjct:   31 EEQVKKAVEALLAHSRSRKNANG-LLLNENENFFLMVVLWKIPSKELR--VRLSLPHGIRSDLADVCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAYEAKLRLLGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTVLNISKSGSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTERSVSLPVFSSF 265

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1DB_SCHPO (Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC8F11.04 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.112e-28
Identity = 84/259 (32.43%), Postives = 140/259 (54.05%), Query Frame = 3

Query:   90 SSELNVEKAVNALLKWRDSQ-------SQAQKPQLLEQD----EFLYL-IVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDD--RSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAM--LFLSSGTCC--VVKVAKLSLEKKEIVENVIAAINGIAER-VPSKWGNIRSFHLKLLDSLALPLFQAMPDLR 809
             S+  +EK  +ALL++   +       S+++K  LLE +    E ++L + +LK I    ++ P K+ + +P+I   +E CL + D  R    +  +A   K+      + +VI LSKLK  +  +E KR+L D +D+F AD R+IP+LPR+LGK F++K K+PVPV +      EQ+     SA    + +S  C   ++K   +S    E+ ENV + +  +++  VP     I S HLK   S+A+PL+   P+L+
Sbjct:    8 GSDAPLEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYKIAIKNPVIPSSSEACLIVKDPQRVYKDLVNEAGLSKV------VTRVIGLSKLKAKWNSYEQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKISKGT-AEQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPLWNN-PNLK 258

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1DA_SCHPO (Putative ribosome biogenesis protein C306.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC306.07c PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.041e-16
Identity = 63/237 (26.58%), Postives = 120/237 (50.63%), Query Frame = 3

Query:  105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDL--KHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAER-VPSKWGNIRSFHLKLLDSLALPLFQAMPDL 806
            +EK + ALL+   S   + KP  +E+++    + + + + +++   P KV LPH I+    + CL + D  ++   +D   ++   E   I KV+ + +LK  YK    K +L DS+++F  D R++  +P L+GK F +KK  P P+ +  K    + Q+     S  L LS+GT   +     +   ++++EN+   +  +    +P  W  I +  +K  DS +LP++ +  +L
Sbjct:   22 LEKTIRALLQHIRS---SDKP--IEKEKVYIQVNTFQPVEKESLRRPSKVFLPHRIMH-VTDACLIVKDSQQT--YQDLVEQQGLDE--VITKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRVLKYIPLLMGKVFEQKKIKPFPISVLQKKETLRNQVARCLHSTYLKLSAGTSHTILCGLATQTNEQLLENITTVLKCLLTNFIPKGWSAIDNVAIKTADSASLPIWTSDTNL 248

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: Y3096_DROME (Ribosomal L1 domain-containing protein CG13096 OS=Drosophila melanogaster GN=CG13096 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.184e-9
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = 3

Query:  384 VIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWK--EQIHNACS-SAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK--LLDSLALPLFQAM 797
            V+  ++L+ +   FEAKRK  +SYD    D R+       LGK   K + +   + L  +N K  +++  A + +A   LS G    V V    +  +++ EN++  I  + E  P    NIRS +LK  +  + ALPL+ +M
Sbjct:  372 VVPFNQLRNEMGSFEAKRKFLNSYDYLLCDGRLSGQATAFLGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAFRQLSKGDLIAVPVGNHEITAEQLAENILLVIKQLQEVYPGGLANIRSMYLKIDITGTSALPLYVSM 514

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.252e-7
Identity = 31/103 (30.10%), Postives = 49/103 (47.57%), Query Frame = 3

Query:  450 SYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758
            +Y  F A   +I  +PRLLG    K  K P P++    N +E + +   S    L    C  V VA + + + EI  N++ AIN +   +   W N+R  ++K
Sbjct:  104 AYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN---KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIK 203

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.776e-7
Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 3

Query:  450 SYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLF-LSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758
            SY  F A + +I  +PRLLG    K  K P  V   H    E   N   + + F L    C  V V  LS+E+K++ +NV  ++N +   +   W N+R  +LK
Sbjct:  105 SYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.681e-7
Identity = 34/103 (33.01%), Postives = 49/103 (47.57%), Query Frame = 3

Query:  453 YDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLF-LSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758
            Y  F A + +I  +PRLLG    K  K P  V   H    E   N   + + F L    C  V V  LS+E+K+I +NV  ++N +   +   W N+R  +LK
Sbjct:  106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
U5FMM2_POPTR	7.271e-116	62.07	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A059A169_EUCGR	3.834e-115	60.62	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A0A0KML2_CUCSA	4.980e-115	55.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
M5WRW3_PRUPE	1.455e-114	63.07	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
I1MJ53_SOYBN	5.451e-113	60.40	Uncharacterized protein OS=Glycine max PE=4 SV=2	[more]
M5WQ16_PRUPE	8.289e-113	60.41	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
I3SBI9_MEDTR	9.837e-113	60.34	Uncharacterized protein OS=Medicago truncatula PE=...	[more]
A0A072V9B4_MEDTR	1.032e-112	60.34	Ribosomal protein L1p/L10e family protein OS=Medic...	[more]
G7IGY3_MEDTR	2.115e-112	60.34	Ribosomal protein L1p/L10e family protein OS=Medic...	[more]
A0A0B2R6I9_GLYSO	2.240e-112	60.40	Ribosomal L1 domain-containing protein 1 OS=Glycin...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 11


Match Name	E-value	Identity	Description
RL1D1_PONAB	1.842e-35	34.89	Ribosomal L1 domain-containing protein 1 OS=Pongo ...	[more]
RL1D1_HUMAN	1.842e-35	34.89	Ribosomal L1 domain-containing protein 1 OS=Homo s...	[more]
RL1D1_MOUSE	1.145e-33	34.43	Ribosomal L1 domain-containing protein 1 OS=Mus mu...	[more]
RL1D1_BOVIN	9.133e-33	34.45	Ribosomal L1 domain-containing protein 1 OS=Bos ta...	[more]
RL1DB_SCHPO	1.112e-28	32.43	Putative ribosome biogenesis protein C8F11.04 OS=S...	[more]
RL1DA_SCHPO	2.041e-16	26.58	Putative ribosome biogenesis protein C306.07c OS=S...	[more]
Y3096_DROME	1.184e-9	30.07	Ribosomal L1 domain-containing protein CG13096 OS=...	[more]
RL10A_CHLRE	2.252e-7	30.10	60S ribosomal protein L10a OS=Chlamydomonas reinha...	[more]
R10A2_ARATH	2.776e-7	32.69	60S ribosomal protein L10a-2 OS=Arabidopsis thalia...	[more]
R10A1_ARATH	3.681e-7	33.01	60S ribosomal protein L10a-1 OS=Arabidopsis thalia...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 265..289
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 38..276
None	No IPR available	PANTHER	PTHR23105:SF31	RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1	coord: 38..276
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich	GENE3D	3.30.190.20		coord: 192..235 e-value: 1.1E-4 score: 21.4
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 41..239 e-value: 7.0E-62 score: 208.6
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 94..178 e-value: 1.1E-14 score: 53.8
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 20..245

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0012685 ID=g.arboreum_cottongen_reftransV1_0012685; Name=g.arboreum_cottongen_reftransV1_0012685; organism=Gossypium arboreum; type=contig; length=1356bp
CGGCAGGGGAAAAAGTGAATAAAACCCTAGCAAAATAGAAAGAAAGAAGG
AAGATGGCGAAGAACATGGGAGTAGCGGGAGCGGCTGCTTCATCCGAATT
GAATGTGGAGAAGGCTGTGAATGCTCTGCTCAAATGGAGAGATTCTCAGT
CCCAAGCCCAAAAACCCCAACTTCTTGAACAGGATGAATTCCTATATCTC
ATCGTCAGCCTCAAGAAAATCCCTCAGAAGGCTCGCGTTAACCCCATCAA
AGTCCCTCTCCCTCACCCCATCATCGATGATCCCGCCGAGCTTTGCTTAT
TCATCGATGACCGCTCCAAGTCTGGTATCACAAAAGACGCTGCGTCTAAG
AAAATCAAGTCGGAAAACATACCCATCAACAAGGTCATTAAGCTGTCCAA
GCTCAAGACTGATTATAAGCCCTTCGAGGCCAAAAGGAAGCTTTGTGATT
CATATGATATGTTTTTCGCTGATAAGAGAATTATCCCACTTCTGCCTCGG
TTATTGGGGAAGCAGTTTTTCAAGAAGAAGAAGATTCCAGTGCCTGTTGA
CCTTAAGCATAACAACTGGAAGGAGCAGATCCATAATGCTTGTTCCTCTG
CTATGTTGTTCTTGAGTAGCGGGACTTGCTGTGTGGTGAAGGTGGCGAAG
CTTTCGTTGGAAAAGAAGGAGATTGTTGAAAACGTGATTGCTGCTATTAA
TGGGATTGCAGAGCGTGTGCCGAGCAAGTGGGGTAATATCAGGTCGTTTC
ATTTGAAGTTGCTCGATAGCTTGGCTTTACCTCTTTTTCAAGCTATGCCT
GATTTGCGTTTGAAGATTCTCGCTGATGCTGATCACCATACTTCTTCCAA
GGAGGAAAAACAAGAAGTTGAAGAAGAGGAAGACGATGCTTCCCATCAGA
AGACGAAGAAAAAGAAGAAAAACAAGGGGAGGATACACGACGTTCAGTAC
ATGGATAATCAAGAACATATTAATGACTCTAACTCTGAGGCTGATAGAAA
ACATGAAATCAATGCGAATATCTCAACCAAGAAAAAGAAGACTGCACTAA
AAAAGTTATGCCCTATTGACATCAAGGTCAAGGATAAGAAAAAGAAGAAA
AGTTTAGCAGCTTAATGATTTTTCTTACTTAGCACCTAGTAAACTTTAAG
TTCAATTTTACTGCTTCTTGTTCTTCCGGATTAGTACTCATTATTGTTTC
TTTTGTAATTGGTTTTACCTTTCAATTTTGGGTTGTTCTTGATCTTTTGA
AGGTCTATGTTATTTTTGAATGCTTCTTTACTTAGCTTTTTATTTGTATT
AGATTGTTAAGAATGAATTTGGAGCATGATTGCTGTAAGCAGCATTTGAA
TCTGAT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR016094	Ribosomal_L1_2-a/b-sand
IPR028364	Ribosomal_uL1/biogenesis
IPR016095	Ribosomal_uL1_3-a/b-sand
IPR023674	Ribosomal_uL1-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Search form

g.arboreum_cottongen_reftransV1_0012685, g.arboreum_cottongen_reftransV1_0012685 (contig) Gossypium arboreum

Pages

Pages