g.arboreum_cottongen_reftransV1_0016361, g.arboreum_cottongen_reftransV1_0016361 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: U5FVS1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17660g PE=4 SV=1) HSP 1 Score: 362.844 bits (930), Expect = 2.947e-117 Identity = 174/211 (82.46%), Postives = 189/211 (89.57%), Query Frame = 1 Query: 1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPP---VFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624 GTKQE+SNCVVPVSA+YTPIKPFPNMPVLPY+PLRCR CRS+LNPF VDF+AKIWICPFCFQRN FPPHYASISD+NLPAELF QYTTIE++ P SS P +FMFVVDT +IEEEMAFLKSALSQAI LL +NSLVGLITFGTLVHVHELGF I KTYVFKGSKDVSKEQLLEQM FFL KPKPPTGVIAGA+DGLS++SI+RFL Sbjct: 22 GTKQESSNCVVPVSAIYTPIKPFPNMPVLPYSPLRCRACRSILNPFCTVDFSAKIWICPFCFQRNQFPPHYASISDDNLPAELFSQYTTIEFEDPQTISSSAPSPMIFMFVVDTCMIEEEMAFLKSALSQAIELLHENSLVGLITFGTLVHVHELGFGEITKTYVFKGSKDVSKEQLLEQMGFFLKKPKPPTGVIAGAKDGLSADSISRFL 232
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: B9IB36_POPTR (Transport family protein OS=Populus trichocarpa GN=POPTR_0014s17660g PE=4 SV=1) HSP 1 Score: 362.844 bits (930), Expect = 3.841e-117 Identity = 174/211 (82.46%), Postives = 189/211 (89.57%), Query Frame = 1 Query: 1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPP---VFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624 GTKQE+SNCVVPVSA+YTPIKPFPNMPVLPY+PLRCR CRS+LNPF VDF+AKIWICPFCFQRN FPPHYASISD+NLPAELF QYTTIE++ P SS P +FMFVVDT +IEEEMAFLKSALSQAI LL +NSLVGLITFGTLVHVHELGF I KTYVFKGSKDVSKEQLLEQM FFL KPKPPTGVIAGA+DGLS++SI+RFL Sbjct: 22 GTKQESSNCVVPVSAIYTPIKPFPNMPVLPYSPLRCRACRSILNPFCTVDFSAKIWICPFCFQRNQFPPHYASISDDNLPAELFSQYTTIEFEDPQTISSSAPSPMIFMFVVDTCMIEEEMAFLKSALSQAIELLHENSLVGLITFGTLVHVHELGFGEITKTYVFKGSKDVSKEQLLEQMGFFLKKPKPPTGVIAGAKDGLSADSISRFL 232
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2V912_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G010400 PE=4 SV=1) HSP 1 Score: 360.918 bits (925), Expect = 4.342e-117 Identity = 173/208 (83.17%), Postives = 187/208 (89.90%), Query Frame = 1 Query: 1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624 GTK+EA NCVVPVSA+YTPIKPFPNM VLPYAPLRCRNC SVLNPF ++DFAAKIWICPFCF R+HFP HYAS+S+ENLPAELFPQYTTIEY+SP EA+ + VFMFV+DTSIIEEEMAFLKSALSQ IGL PDNSLVGLITFGTLVH+HE+GF+T PKTYVFKGSKDVSK QLLEQM FFL KPKP TGV RDGLSSESIARFL Sbjct: 22 GTKEEAGNCVVPVSAIYTPIKPFPNMLVLPYAPLRCRNCSSVLNPFCVMDFAAKIWICPFCFHRSHFPAHYASVSEENLPAELFPQYTTIEYKSPREAACLQSVFMFVIDTSIIEEEMAFLKSALSQVIGLFPDNSLVGLITFGTLVHLHEIGFSTAPKTYVFKGSKDVSKGQLLEQMGFFLNKPKPLTGV----RDGLSSESIARFL 225
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2TSX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G010400 PE=4 SV=1) HSP 1 Score: 361.303 bits (926), Expect = 6.500e-117 Identity = 173/208 (83.17%), Postives = 187/208 (89.90%), Query Frame = 1 Query: 1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624 GTK+EA NCVVPVSA+YTPIKPFPNM VLPYAPLRCRNC SVLNPF ++DFAAKIWICPFCF R+HFP HYAS+S+ENLPAELFPQYTTIEY+SP EA+ + VFMFV+DTSIIEEEMAFLKSALSQ IGL PDNSLVGLITFGTLVH+HE+GF+T PKTYVFKGSKDVSK QLLEQM FFL KPKP TGV RDGLSSESIARFL Sbjct: 22 GTKEEAGNCVVPVSAIYTPIKPFPNMLVLPYAPLRCRNCSSVLNPFCVMDFAAKIWICPFCFHRSHFPAHYASVSEENLPAELFPQYTTIEYKSPREAACLQSVFMFVIDTSIIEEEMAFLKSALSQVIGLFPDNSLVGLITFGTLVHLHEIGFSTAPKTYVFKGSKDVSKGQLLEQMGFFLNKPKPLTGV----RDGLSSESIARFL 225
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2V7Q4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G010400 PE=4 SV=1) HSP 1 Score: 360.533 bits (924), Expect = 8.823e-117 Identity = 173/208 (83.17%), Postives = 187/208 (89.90%), Query Frame = 1 Query: 1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624 GTK+EA NCVVPVSA+YTPIKPFPNM VLPYAPLRCRNC SVLNPF ++DFAAKIWICPFCF R+HFP HYAS+S+ENLPAELFPQYTTIEY+SP EA+ + VFMFV+DTSIIEEEMAFLKSALSQ IGL PDNSLVGLITFGTLVH+HE+GF+T PKTYVFKGSKDVSK QLLEQM FFL KPKP TGV RDGLSSESIARFL Sbjct: 22 GTKEEAGNCVVPVSAIYTPIKPFPNMLVLPYAPLRCRNCSSVLNPFCVMDFAAKIWICPFCFHRSHFPAHYASVSEENLPAELFPQYTTIEYKSPREAACLQSVFMFVIDTSIIEEEMAFLKSALSQVIGLFPDNSLVGLITFGTLVHLHEIGFSTAPKTYVFKGSKDVSKGQLLEQMGFFLNKPKPLTGV----RDGLSSESIARFL 225
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_COCIM (Protein transport protein SEC23 OS=Coccidioides immitis (strain RS) GN=SEC23 PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 1.143e-57 Identity = 100/208 (48.08%), Postives = 134/208 (64.42%), Query Frame = 1 Query: 4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624 T+ EAS VVP+ A+YTP+K P+ P+L Y P+ C+ CR+VLNP++ VD A+IWICPFC QRN PPHY I++ +P EL PQ TTIEYQ A + PP+F+FVVDT E+ + +K +L ++ LLP N+LVGLITFGT+ VHELG+ K+YVFKGSKD + +Q+ E + + P R + ARFL Sbjct: 29 TRMEASRLVVPIGAIYTPLKERPDAPLLQYEPVTCKQPCRAVLNPYANVDIRARIWICPFCLQRNPLPPHYKDITENTIPPELHPQSTTIEYQLARPAPA-PPIFLFVVDTCQEEDGLKAVKDSLVMSLSLLPPNALVGLITFGTMAQVHELGYTECAKSYVFKGSKDYTPKQIQEMLGLLAPGLRAPAPQQQPGRPAPAVAPAARFL 235
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_USTMA (Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.378e-55 Identity = 87/180 (48.33%), Postives = 129/180 (71.67%), Query Frame = 1 Query: 4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540 +K EA+ VVP+SA+YTP+K ++P + Y P+ C+ CR+VLNP+ +D K+WICPFC RN FPPHY IS NLPAEL P+YTTIEY + + IPP+F++VVDT + ++++ L+ AL ++ LLP N+LVGLIT+GT+ VHELG++ PK+YVF+G+K+ + + + + + Sbjct: 22 SKIEATRTVVPISALYTPLKEREDLPPVLYEPVTCKPPCRAVLNPYCQIDVRGKLWICPFCLSRNAFPPHYKDISSTNLPAELLPKYTTIEY-TLSRPAQIPPIFLYVVDTCMDDDDLKALREALVVSLSLLPPNALVGLITYGTMAQVHELGYDACPKSYVFRGTKEYAPKAIQDMLGL 200
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_CHAGB (Protein transport protein SEC23 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SEC23 PE=3 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.364e-54 Identity = 92/185 (49.73%), Postives = 129/185 (69.73%), Query Frame = 1 Query: 4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKP 555 T+ EAS VVP+ A+YTP+K P+ P+L + P+ C+ CRSVLNPF VD A++WICPFC RN PPHY I+ + +P EL P TTIEY+ A S PP+F++VVDT E+ +A LK +L ++ LLP+N+LVGLIT+GT+ VHE+G+ K+YVF+GSK+ + +Q+ E + LI+P Sbjct: 29 TRMEASRLVVPIGALYTPLKEKPDTPLLQFEPVTCKQPCRSVLNPFCQVDVRARLWICPFCLSRNPLPPHYKDITAQAIPPELHPSNTTIEYRLSRPAPS-PPIFLYVVDTCQEEDSLAALKESLIMSLSLLPENALVGLITYGTMAQVHEIGYTECAKSYVFRGSKEYAAKQVQEMLG--LIQP 210
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_ASPOR (Protein transport protein sec23 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sec23 PE=3 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 6.772e-54 Identity = 90/187 (48.13%), Postives = 125/187 (66.84%), Query Frame = 1 Query: 4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKP 561 ++ EAS VVP+ AVYTP+K P+ P+L Y P+ C+ CR+VLNP++ VD A+IWICPFC RN PPHY I++ +P EL P TTIEYQ A + PP+F++VVDT E+ + LK L ++ LLP N+LVGLIT+GT+ VHELG+ K+YVF+GSK+ + +Q+ E + +P Sbjct: 29 SRMEASRLVVPIGAVYTPLKDKPDSPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITESTIPPELHPLSTTIEYQLARPAPT-PPIFVYVVDTCQEEDSLKALKDTLVMSLSLLPANALVGLITYGTMAQVHELGYTECAKSYVFRGSKEYAAKQVQEMLGLLSAGVRP 214
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_MAGO7 (Protein transport protein SEC23 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SEC23 PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.036e-53 Identity = 89/187 (47.59%), Postives = 126/187 (67.38%), Query Frame = 1 Query: 4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKP 561 T+ EAS VVP+ A+YTP+K P+ P+L + P+ C+ CRSVLNPF VD A++WICPFC RN PPHY I+ +P EL P TTIEY+ A S PP+F++VVDT ++ + LK +L ++ LLP+N+LVGLIT+GT+ VHE+G+ K+YVF+GSKD + +Q+ E + + +P Sbjct: 29 TRMEASRLVVPIGALYTPLKEKPDTPLLQFEPVTCKQPCRSVLNPFCQVDVRARLWICPFCLSRNPLPPHYKDITANAIPPELHPSNTTIEYRLSRPAPS-PPIFLYVVDTCQEDDSLNALKESLVMSLSLLPENALVGLITYGTMTQVHEIGYTECAKSYVFRGSKDYAPKQVQEMLGLGQMPVRP 214
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_ASPCL (Protein transport protein sec23 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=sec23 PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.080e-53 Identity = 95/187 (50.80%), Postives = 127/187 (67.91%), Query Frame = 1 Query: 4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKP 561 T+ EAS VVP++AVYTP+K P P+L Y P+ C+ CR+VLNP++ VD A+IWICPFC RN PPHY I++ +P EL PQ TTIEYQ A + PP+F++VVDT E+ + LK L ++ LLP N+LVGLITFGT+ VHELG+ K+YVF+GSKD + +Q+ E + P+P Sbjct: 29 TRMEASRLVVPIAAVYTPLKEKPESPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITENAIPPELHPQSTTIEYQLARPAPA-PPIFVYVVDTCQEEDSLKALKDTLILSLSLLPPNALVGLITFGTMAQVHELGYTECAKSYVFRGSKDYAAKQVQEMLGLLAPGPRP 214
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_ASPNC (Protein transport protein sec23 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec23 PE=3 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 2.877e-53 Identity = 88/180 (48.89%), Postives = 124/180 (68.89%), Query Frame = 1 Query: 4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540 ++ EAS VVP+ AVYTP+K P+ P+L Y P+ C+ CR+VLNP++ VD A+IWICPFC RN PPHY I++ +P EL P TTIEYQ A + PP+F++VVDT ++ + LK +L ++ LLP N+LVGLIT+GT+ VHELG+ K+YVF+GSK+ + +Q+ E + Sbjct: 29 SRMEASRLVVPIGAVYTPLKEKPDSPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITESTIPPELHPMSTTIEYQLARPAPA-PPIFVYVVDTCQDDDSLKALKDSLIMSLSLLPVNALVGLITYGTMAQVHELGYTECAKSYVFRGSKEYAAKQVQEMLGL 207
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_NEUCR (Protein transport protein sec23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec23-1 PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 4.119e-53 Identity = 88/185 (47.57%), Postives = 129/185 (69.73%), Query Frame = 1 Query: 4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKP 555 T+ EAS VVP+ A+YTP+K P+ P+L + P+ C+ CRSVLNP+ VD A++WICPFC RN PPHY I+ +P EL P TTIEY+ A + PP+F++VVDT E+ +A LK +L ++ LLP+++LVGLIT+GT+ VHE+G+ PK+YVF+G+K+ + +Q+ E + L++P Sbjct: 29 TRMEASRLVVPIGALYTPLKEKPDTPLLQFDPVSCKQPCRSVLNPYCQVDVRARLWICPFCLSRNPLPPHYKDITANAIPPELHPSNTTIEYRLSRPAPA-PPIFLYVVDTCQEEDSLAALKESLIMSLSLLPEHALVGLITYGTMAQVHEIGYTECPKSYVFRGNKEYAAKQVQEMLG--LVQP 210
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23A_MOUSE (Protein transport protein Sec23A OS=Mus musculus GN=Sec23a PE=1 SV=2) HSP 1 Score: 186.037 bits (471), Expect = 4.468e-53 Identity = 88/181 (48.62%), Postives = 126/181 (69.61%), Query Frame = 1 Query: 4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540 ++ EA+ VVPV+A++TP+K P++P + Y P+ C CR+VLNP VD+ AK+W C FC+QRN FPP YA IS+ N PAEL PQ+++IEY +P +F++VVDT I +E++ LK ++ ++ LLP +LVGLITFG +V VHELG I K+YVF+G+KD+S +QL E + Sbjct: 27 SRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVL-RGPQMPLIFLYVVDTCIEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGL 206
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_YARLI (Protein transport protein SEC23 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC23 PE=3 SV=2) HSP 1 Score: 186.037 bits (471), Expect = 5.201e-53 Identity = 88/180 (48.89%), Postives = 121/180 (67.22%), Query Frame = 1 Query: 4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540 T+ EAS VVP+SA+YTP+K PN+PVL Y P+ CR CR+VLN F VD A+ W+CPFC RN PP Y I+ ENLP EL P+ TT+EY A + P+F+FVVDT + E + LK L + L+P+N+LVGLITFG + VHE+G+ K++VF+G++D + +Q+ EQ+ Sbjct: 22 TRIEASRTVVPISALYTPLKEKPNLPVLQYEPIACRPPCRAVLNSFCQVDLRARAWVCPFCLSRNQLPPQYRDITPENLPHELRPECTTVEYVLSRPAPN--PIFLFVVDTCLDAENLTALKDHLVATLSLIPENALVGLITFGAMAQVHEIGYRECGKSFVFRGNRDYTAKQVQEQLGL 199 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016361 ID=g.arboreum_cottongen_reftransV1_0016361; Name=g.arboreum_cottongen_reftransV1_0016361; organism=Gossypium arboreum; type=contig; length=624bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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