g.arboreum_cottongen_reftransV1_0016361, g.arboreum_cottongen_reftransV1_0016361 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0016361
Unique Name	g.arboreum_cottongen_reftransV1_0016361
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0016361:1..624 . Chr9:3068294..3068917 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2VPN7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 2.020e-144
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2UVW3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 3.434e-144
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2UW96_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 6.829e-144
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2TB59_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 1.517e-143
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A061FTE4_THECC (Sec23/Sec24 protein transport family protein isoform 2 OS=Theobroma cacao GN=TCM_045610 PE=4 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 8.680e-138
Identity = 198/208 (95.19%), Postives = 204/208 (98.08%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASS+PPVFMFV+DTSIIEEEMAFLKS+LSQAIGLLPDNSLVGLITFGTLVHVHELGF  IPKTYVFKGSKDVSK+QLLEQM+FFL KPKP TGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSLPPVFMFVLDTSIIEEEMAFLKSSLSQAIGLLPDNSLVGLITFGTLVHVHELGFGAIPKTYVFKGSKDVSKDQLLEQMSFFLNKPKPTTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A061FTV4_THECC (Sec23/Sec24 protein transport family protein isoform 1 OS=Theobroma cacao GN=TCM_045610 PE=4 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 1.961e-134
Identity = 198/208 (95.19%), Postives = 204/208 (98.08%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASS+PPVFMFV+DTSIIEEEMAFLKS+LSQAIGLLPDNSLVGLITFGTLVHVHELGF  IPKTYVFKGSKDVSK+QLLEQM+FFL KPKP TGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSLPPVFMFVLDTSIIEEEMAFLKSSLSQAIGLLPDNSLVGLITFGTLVHVHELGFGAIPKTYVFKGSKDVSKDQLLEQMSFFLNKPKPTTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: B9SKJ9_RICCO (Protein transport protein sec23, putative OS=Ricinus communis GN=RCOM_0659690 PE=4 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 1.088e-128
Identity = 186/208 (89.42%), Postives = 195/208 (93.75%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            G+KQEASNCVVPVSA+YTPIKPFPNMPVLPYAPLRCR CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHY SISD+NLPAELFPQYTTIEY++PGE  S   VFMFVVDT IIEEEMAFLKSALSQAI LLPDNSLVGLITFGTLVHVHELGF  IPKTYVF+GSKDVSK+QLL+QM FFL KPKPPTGVIAGARDGLSSESI+RFL
Sbjct:   22 GSKQEASNCVVPVSAIYTPIKPFPNMPVLPYAPLRCRTCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYGSISDDNLPAELFPQYTTIEYETPGEKFSYSSVFMFVVDTCIIEEEMAFLKSALSQAIDLLPDNSLVGLITFGTLVHVHELGFGQIPKTYVFRGSKDVSKDQLLDQMGFFLKKPKPPTGVIAGARDGLSSESISRFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0A0KD02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078680 PE=4 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 3.424e-126
Identity = 181/209 (86.60%), Postives = 197/209 (94.26%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEA-SSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNC+VPVSA+YTPIK FPNMPVLPY+PLRCR CRS+LNPFSIVDFAAKIWICPFCFQRNHFPPHYASISD+NLPAELFPQYTTIEY+S GE  S +PPVFMFV+DT IIEEE+AFLKSALSQA+ LLPDNSLVGL+T+GT VHVHELGF  IPKT+VFKG+KDVSK+QLLEQMNFFL KPKPPTGVIAGARDGLS+ESIARFL
Sbjct:   22 GTKQEASNCIVPVSALYTPIKAFPNMPVLPYSPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYESTGETPSPVPPVFMFVLDTCIIEEEIAFLKSALSQAVDLLPDNSLVGLVTYGTFVHVHELGFGQIPKTFVFKGTKDVSKDQLLEQMNFFLKKPKPPTGVIAGARDGLSTESIARFL 230

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A067HBX3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004199mg PE=4 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 6.014e-123
Identity = 181/216 (83.80%), Postives = 195/216 (90.28%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFP----NMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQ--SPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELG--FNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIK FP    +MP+LPYAPLRCR CRS+LNPFSIVDFAAKIWICPFCFQRNHFPPHYASI+D+NLPAELFPQYTTIEY+   PGE SS+PPVFMFVVDT IIEEEM+FLKSALSQAI LLPDNSLVGLITFGTLV VHELG     IPKTYVFKGSKDVSK+QLLEQ+NFF+ KPKP TGVIAG RDGLSS++IARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A067HC62_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004199mg PE=4 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 1.690e-122
Identity = 181/216 (83.80%), Postives = 195/216 (90.28%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFP----NMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQ--SPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELG--FNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIK FP    +MP+LPYAPLRCR CRS+LNPFSIVDFAAKIWICPFCFQRNHFPPHYASI+D+NLPAELFPQYTTIEY+   PGE SS+PPVFMFVVDT IIEEEM+FLKSALSQAI LLPDNSLVGLITFGTLV VHELG     IPKTYVFKGSKDVSK+QLLEQ+NFF+ KPKP TGVIAG RDGLSS++IARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23B_MOUSE (Protein transport protein Sec23B OS=Mus musculus GN=Sec23b PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.392e-51
Identity = 85/181 (46.96%), Postives = 125/181 (69.06%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            ++ EA+  VVP++ + TP+K  P++P + Y P+ C    C+++LNP   VD+ AK+W C FCFQRN FPP YA IS+ N PAEL PQ++TIEY     A S P +F++VVDT + E+++  LK +L  ++ LLP ++LVGLITFG +V VHEL    I K+YVF+G+KD++ +Q+ E +  
Sbjct:   27 SRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYMIQRGARS-PLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQEMLGL 206

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_EMENI (Protein transport protein sec23 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sec23 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.510e-51
Identity = 92/190 (48.42%), Postives = 128/190 (67.37%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFL-IKPKPPT 567
            ++ EAS  VVP+ A+YTP+K  P+ P+L Y P+ C+  CR+VLNP++ VD  A+IWICPFC  RN  PPHY  I++  +P EL P  TTIEYQ    A + PP+F+FVVDT   ++ +  +K +L  ++ LLP N+LVGLITFGT+  VHELG+    K+YVF+GSKD + +Q+ E +     I+P  P 
Sbjct:   29 SRMEASRLVVPIGAIYTPLKERPDAPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITESTIPPELHPLSTTIEYQLARPAPA-PPIFVFVVDTCQEDDSLKAVKDSLILSLSLLPPNALVGLITFGTMAQVHELGYTECAKSYVFRGSKDYNAKQVQEMLGLASGIRPNMPN 217

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23B_HUMAN (Protein transport protein Sec23B OS=Homo sapiens GN=SEC23B PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 9.184e-51
Identity = 88/189 (46.56%), Postives = 128/189 (67.72%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPP 564
            ++ EA+  VVP++ + TP+K  P++P + Y P+ C    C++VLNP   VD+ AK+W C FCFQRN FPP Y  IS+ N PAEL PQ++TIEY     A S P +F++VVDT + E+++  LK +L  ++ LLP ++LVGLITFG +V VHEL    I K+YVF+G+KD++ +Q+ + +   L KP  P
Sbjct:   27 SRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYVIQRGAQS-PLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLG--LTKPAMP 212

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23B_PONAB (Protein transport protein Sec23B OS=Pongo abelii GN=SEC23B PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.989e-51
Identity = 88/189 (46.56%), Postives = 128/189 (67.72%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPP 564
            ++ EA+  VVP++ + TP+K  P++P + Y P+ C    C++VLNP   VD+ AK+W C FCFQRN FPP Y  IS+ N PAEL PQ++TIEY     A S P +F++VVDT + E+++  LK +L  ++ LLP ++LVGLITFG +V VHEL    I K+YVF+G+KD++ +Q+ + +   L KP  P
Sbjct:   27 SRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYVIQRGAQS-PLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLG--LTKPAMP 212

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23B_BOVIN (Protein transport protein Sec23B OS=Bos taurus GN=SEC23B PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.222e-50
Identity = 87/189 (46.03%), Postives = 129/189 (68.25%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPP 564
            ++ EA+  VVP++ + TP+K  P++P + Y P+ C    C+++LNP   VD+ AK+W C FCFQRN FPP YA IS+ N PAEL PQ++TIEY     A S P +F++VVDT + ++++  LK +L  ++ LLP ++LVGLITFG +V VHEL    I K+YVF+G+KD++ +Q+ + +   L KP  P
Sbjct:   27 SRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYVIQRGAPS-PLIFLYVVDTCLEDDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLG--LTKPAMP 212

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2VPN7_GOSRA	2.020e-144	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UVW3_GOSRA	3.434e-144	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UW96_GOSRA	6.829e-144	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TB59_GOSRA	1.517e-143	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FTE4_THECC	8.680e-138	95.19	Sec23/Sec24 protein transport family protein isofo...	[more]
A0A061FTV4_THECC	1.961e-134	95.19	Sec23/Sec24 protein transport family protein isofo...	[more]
B9SKJ9_RICCO	1.088e-128	89.42	Protein transport protein sec23, putative OS=Ricin...	[more]
A0A0A0KD02_CUCSA	3.424e-126	86.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
A0A067HBX3_CITSI	6.014e-123	83.80	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067HC62_CITSI	1.690e-122	83.80	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
SC23B_MOUSE	3.392e-51	46.96	Protein transport protein Sec23B OS=Mus musculus G...	[more]
SEC23_EMENI	4.510e-51	48.42	Protein transport protein sec23 OS=Emericella nidu...	[more]
SC23B_HUMAN	9.184e-51	46.56	Protein transport protein Sec23B OS=Homo sapiens G...	[more]
SC23B_PONAB	9.989e-51	46.56	Protein transport protein Sec23B OS=Pongo abelii G...	[more]
SC23B_BOVIN	3.222e-50	46.03	Protein transport protein Sec23B OS=Bos taurus GN=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002035	von Willebrand factor, type A	GENE3D	3.40.50.410		coord: 77..161 e-value: 1.9E-28 score: 99.0
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 76..159
IPR006895	Zinc finger, Sec23/Sec24-type	PFAM	PF04810	zf-Sec23_Sec24	coord: 8..46 e-value: 2.1E-18 score: 65.9
IPR006895	Zinc finger, Sec23/Sec24-type	SUPERFAMILY	82919	Zn-finger domain of Sec23/24	coord: 2..71
IPR006896	Sec23/Sec24, trunk domain	PFAM	PF04811	Sec23_trunk	coord: 77..153 e-value: 1.8E-17 score: 63.6
None	No IPR available	PANTHER	PTHR11141	PROTEIN TRANSPORT PROTEIN SEC23	coord: 1..183
None	No IPR available	PANTHER	PTHR11141:SF2	SUBFAMILY NOT NAMED	coord: 1..183

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0016361 ID=g.arboreum_cottongen_reftransV1_0016361; Name=g.arboreum_cottongen_reftransV1_0016361; organism=Gossypium arboreum; type=contig; length=624bp
GGGACAAAGCAAGAGGCAAGTAACTGTGTGGTGCCAGTGTCAGCCGTCTA
CACTCCGATCAAACCATTCCCCAACATGCCGGTCCTACCCTATGCTCCTC
TCCGTTGCCGCAATTGCCGCTCTGTCCTCAACCCCTTCTCCATCGTGGAT
TTTGCTGCCAAGATTTGGATCTGCCCCTTCTGCTTCCAGCGCAATCACTT
CCCTCCCCACTATGCCTCCATCTCAGACGAAAATCTCCCTGCTGAGCTCT
TCCCTCAGTACACCACCATTGAGTACCAATCCCCAGGGGAGGCCTCCTCC
ATTCCTCCTGTCTTCATGTTCGTTGTTGACACCTCCATTATTGAAGAGGA
AATGGCATTCCTGAAGTCTGCATTGTCCCAGGCCATAGGCCTTTTGCCCG
ACAACTCTCTTGTTGGTTTGATCACATTTGGCACCCTCGTTCATGTGCAT
GAGCTTGGCTTCAATACCATTCCTAAGACCTATGTCTTCAAGGGCTCCAA
GGATGTCTCTAAAGAACAGCTTCTTGAGCAGATGAACTTCTTCCTTATCA
AGCCCAAGCCCCCCACTGGTGTCATTGCTGGTGCCAGAGATGGCCTGTCT
TCTGAGAGCATTGCCCGATTCCTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002035	VWF_A
IPR006895	Znf_Sec23_Sec24
IPR006896	Sec23/24_trunk_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006886	intracellular protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0030127	COPII vesicle coat

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Search form

g.arboreum_cottongen_reftransV1_0016361, g.arboreum_cottongen_reftransV1_0016361 (contig) Gossypium arboreum

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