g.arboreum_cottongen_reftransV1_0016361, g.arboreum_cottongen_reftransV1_0016361 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0016361
Unique Name	g.arboreum_cottongen_reftransV1_0016361
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	624

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0016361:1..624 . Chr9:3068294..3068917 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2VPN7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 2.020e-144
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2UVW3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 3.434e-144
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2UW96_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 6.829e-144
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2TB59_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 1.517e-143
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A061FTE4_THECC (Sec23/Sec24 protein transport family protein isoform 2 OS=Theobroma cacao GN=TCM_045610 PE=4 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 8.680e-138
Identity = 198/208 (95.19%), Postives = 204/208 (98.08%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASS+PPVFMFV+DTSIIEEEMAFLKS+LSQAIGLLPDNSLVGLITFGTLVHVHELGF  IPKTYVFKGSKDVSK+QLLEQM+FFL KPKP TGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSLPPVFMFVLDTSIIEEEMAFLKSSLSQAIGLLPDNSLVGLITFGTLVHVHELGFGAIPKTYVFKGSKDVSKDQLLEQMSFFLNKPKPTTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A061FTV4_THECC (Sec23/Sec24 protein transport family protein isoform 1 OS=Theobroma cacao GN=TCM_045610 PE=4 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 1.961e-134
Identity = 198/208 (95.19%), Postives = 204/208 (98.08%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASS+PPVFMFV+DTSIIEEEMAFLKS+LSQAIGLLPDNSLVGLITFGTLVHVHELGF  IPKTYVFKGSKDVSK+QLLEQM+FFL KPKP TGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSLPPVFMFVLDTSIIEEEMAFLKSSLSQAIGLLPDNSLVGLITFGTLVHVHELGFGAIPKTYVFKGSKDVSKDQLLEQMSFFLNKPKPTTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: B9SKJ9_RICCO (Protein transport protein sec23, putative OS=Ricinus communis GN=RCOM_0659690 PE=4 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 1.088e-128
Identity = 186/208 (89.42%), Postives = 195/208 (93.75%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            G+KQEASNCVVPVSA+YTPIKPFPNMPVLPYAPLRCR CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHY SISD+NLPAELFPQYTTIEY++PGE  S   VFMFVVDT IIEEEMAFLKSALSQAI LLPDNSLVGLITFGTLVHVHELGF  IPKTYVF+GSKDVSK+QLL+QM FFL KPKPPTGVIAGARDGLSSESI+RFL
Sbjct:   22 GSKQEASNCVVPVSAIYTPIKPFPNMPVLPYAPLRCRTCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYGSISDDNLPAELFPQYTTIEYETPGEKFSYSSVFMFVVDTCIIEEEMAFLKSALSQAIDLLPDNSLVGLITFGTLVHVHELGFGQIPKTYVFRGSKDVSKDQLLDQMGFFLKKPKPPTGVIAGARDGLSSESISRFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0A0KD02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078680 PE=4 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 3.424e-126
Identity = 181/209 (86.60%), Postives = 197/209 (94.26%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEA-SSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNC+VPVSA+YTPIK FPNMPVLPY+PLRCR CRS+LNPFSIVDFAAKIWICPFCFQRNHFPPHYASISD+NLPAELFPQYTTIEY+S GE  S +PPVFMFV+DT IIEEE+AFLKSALSQA+ LLPDNSLVGL+T+GT VHVHELGF  IPKT+VFKG+KDVSK+QLLEQMNFFL KPKPPTGVIAGARDGLS+ESIARFL
Sbjct:   22 GTKQEASNCIVPVSALYTPIKAFPNMPVLPYSPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYESTGETPSPVPPVFMFVLDTCIIEEEIAFLKSALSQAVDLLPDNSLVGLVTYGTFVHVHELGFGQIPKTFVFKGTKDVSKDQLLEQMNFFLKKPKPPTGVIAGARDGLSTESIARFL 230

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A067HBX3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004199mg PE=4 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 6.014e-123
Identity = 181/216 (83.80%), Postives = 195/216 (90.28%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFP----NMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQ--SPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELG--FNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIK FP    +MP+LPYAPLRCR CRS+LNPFSIVDFAAKIWICPFCFQRNHFPPHYASI+D+NLPAELFPQYTTIEY+   PGE SS+PPVFMFVVDT IIEEEM+FLKSALSQAI LLPDNSLVGLITFGTLV VHELG     IPKTYVFKGSKDVSK+QLLEQ+NFF+ KPKP TGVIAG RDGLSS++IARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A067HC62_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004199mg PE=4 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 1.690e-122
Identity = 181/216 (83.80%), Postives = 195/216 (90.28%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFP----NMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQ--SPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELG--FNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIK FP    +MP+LPYAPLRCR CRS+LNPFSIVDFAAKIWICPFCFQRNHFPPHYASI+D+NLPAELFPQYTTIEY+   PGE SS+PPVFMFVVDT IIEEEM+FLKSALSQAI LLPDNSLVGLITFGTLV VHELG     IPKTYVFKGSKDVSK+QLLEQ+NFF+ KPKP TGVIAG RDGLSS++IARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_NEOFI (Protein transport protein sec23 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sec23 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.750e-53
Identity = 93/187 (49.73%), Postives = 128/187 (68.45%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKP 561
            T+ EAS  VVP++AVYTP+K  P+ P+L Y P+ C+  CR+VLNP++ VD  A+IWICPFC  RN  PPHY  I++  +P EL PQ TTIEYQ    A + PP+F++VVDT   E+ +  LK  L  ++ LLP N+LVGLIT+GT+  VHELG+    K+YVF+GSK+ + +Q+ E +      P+P
Sbjct:   29 TRMEASRLVVPIAAVYTPLKEKPDSPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITENAIPPELHPQSTTIEYQLARPAPA-PPIFVYVVDTCQEEDSLKALKDTLILSLSLLPPNALVGLITYGTMAQVHELGYTECAKSYVFRGSKEYAAKQVQEMLGLLAAGPRP 214

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_ASPFU (Protein transport protein sec23 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sec23 PE=3 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 5.981e-53
Identity = 93/187 (49.73%), Postives = 128/187 (68.45%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKP 561
            T+ EAS  VVP++AVYTP+K  P+ P+L Y P+ C+  CR+VLNP++ VD  A+IWICPFC  RN  PPHY  I++  +P EL PQ TTIEYQ    A + PP+F++VVDT   E+ +  LK  L  ++ LLP N+LVGLIT+GT+  VHELG+    K+YVF+GSK+ + +Q+ E +      P+P
Sbjct:   29 TRMEASRLVVPIAAVYTPLKEKPDSPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITENAIPPELHPQSTTIEYQLARPAPA-PPIFVYVVDTCQEEDSLKALKDTLILSLSLLPPNALVGLITYGTMAQVHELGYTECAKSYVFRGSKEYAAKQVQEMLGLLAAGPRP 214

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23A_XENTR (Protein transport protein Sec23A OS=Xenopus tropicalis GN=sec23a PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.082e-53
Identity = 86/181 (47.51%), Postives = 127/181 (70.17%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            ++ EA+  VVPV+A+ TP+K  P++P + Y P+ C    CR+VLNP   VD+ AK+W C FC+QRN FPP YA IS+ N PAEL PQ+++IEY        +P +F++VVDT + +E++  LK ++  ++ LLP  +LVGLITFG +VHVHELG   I K+YVF+G+KD++ +Q+ E ++ 
Sbjct:   27 SRLEATRMVVPVAALLTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISEMNQPAELLPQFSSIEYVVQ-RGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVHVHELGCEGISKSYVFRGNKDLTGKQIQEMLSL 206

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_CRYNJ (Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SEC23 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.242e-53
Identity = 87/182 (47.80%), Postives = 126/182 (69.23%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCR--NCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHY-ASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            ++ EA+  VVP+SA+YTP+K   ++P + Y P+ C+  +C+++LNP+  VD   K+WICPFC QRN FPPHY   +S  NLP EL P++TTIEY +    + IPP+F++VVDT + E+E+  LK  L  ++ LLP N+LVGLIT+GT+  VHEL +   PK YVF+GSKD   +Q+ + +  
Sbjct:   22 SRLEATRTVVPISALYTPLKEREDLPPVMYEPVTCKGSSCKAILNPYCQVDVRGKMWICPFCLQRNPFPPHYHQDLSPNNLPPELLPKFTTIEY-TLSRPAQIPPIFLYVVDTCVDEDELKALKETLVVSLSLLPPNALVGLITYGTMAMVHELAYADCPKAYVFRGSKDYQPKQIADMLGL 202

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_CRYNB (Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SEC23 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.242e-53
Identity = 87/182 (47.80%), Postives = 126/182 (69.23%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCR--NCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHY-ASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            ++ EA+  VVP+SA+YTP+K   ++P + Y P+ C+  +C+++LNP+  VD   K+WICPFC QRN FPPHY   +S  NLP EL P++TTIEY +    + IPP+F++VVDT + E+E+  LK  L  ++ LLP N+LVGLIT+GT+  VHEL +   PK YVF+GSKD   +Q+ + +  
Sbjct:   22 SRLEATRTVVPISALYTPLKEREDLPPVMYEPVTCKGSSCKAILNPYCQVDVRGKMWICPFCLQRNPFPPHYHQDLSPNNLPPELLPKFTTIEY-TLSRPAQIPPIFLYVVDTCVDEDELKALKETLVVSLSLLPPNALVGLITYGTMAMVHELAYADCPKAYVFRGSKDYQPKQIADMLGL 202

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23A_HUMAN (Protein transport protein Sec23A OS=Homo sapiens GN=SEC23A PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 7.365e-53
Identity = 88/184 (47.83%), Postives = 128/184 (69.57%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEY---QSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            ++ EA+  VVPV+A++TP+K  P++P + Y P+ C    CR+VLNP   VD+ AK+W C FC+QRN FPP YA IS+ N PAEL PQ+++IEY   + P     +P +F++VVDT + +E++  LK ++  ++ LLP  +LVGLITFG +V VHELG   I K+YVF+G+KD+S +QL E +  
Sbjct:   27 SRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGL 206

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23A_BOVIN (Protein transport protein Sec23A OS=Bos taurus GN=SEC23A PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.181e-52
Identity = 87/181 (48.07%), Postives = 126/181 (69.61%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            ++ EA+  VVPV+A++TP+K  P++P + Y P+ C    CR+VLNP   VD+ AK+W C FC+QRN FPP YA IS+ N PAEL PQ+++IEY        +P +F++VVDT + +E++  LK ++  ++ LLP  +LVGLITFG +V VHELG   I K+YVF+G+KD+S +QL E +  
Sbjct:   27 SRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVL-RGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGL 206

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23A_PONAB (Protein transport protein Sec23A OS=Pongo abelii GN=SEC23A PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.231e-52
Identity = 88/184 (47.83%), Postives = 127/184 (69.02%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEY---QSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            ++ EA+  VVPV+A++TP+K  P+ P + Y P+ C    CR+VLNP   VD+ AK+W C FC+QRN FPP YA IS+ N PAEL PQ+++IEY   + P     +P +F++VVDT + +E++  LK ++  ++ LLP  +LVGLITFG +V VHELG   I K+YVF+G+KD+S +QL E +  
Sbjct:   27 SRLEATRMVVPVAALFTPLKERPDSPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGL 206

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_PHANO (Protein transport protein SEC23 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SEC23 PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 3.256e-52
Identity = 91/209 (43.54%), Postives = 128/209 (61.24%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFF-LIKPKPPTGVIAGARDGLSSESIARFL 624
            ++ EAS  VVP+ A+YTP+K   + P+L Y P+ CR  C+ VLNP+  VD  A++WICPFC  RN  PPHY  IS E +P EL P  TTIEY+ P  A    P+F+FV+DT   E+ +  LK ++  ++ LLP  +LVGLIT+GT+  VHELG+    K+YVF+G+KD S +Q+   +    +  P+P      G   G    +  RF+
Sbjct:   30 SRMEASRLVVPIGALYTPLKEKTDTPLLQYEPVVCRAPCKGVLNPYCQVDMRARVWICPFCLNRNQLPPHYKDISQEQIPPELHPSSTTIEYRLPKPA-RCAPIFIFVIDTCQEEDSLKALKDSIIMSLSLLPAYALVGLITYGTMTQVHELGYTECAKSYVFRGNKDYSTKQVQTMIGLGQMAAPRPGMQAQPGQPGGAPPTAAMRFI 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23A_DANRE (Protein transport protein Sec23A OS=Danio rerio GN=sec23a PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 6.014e-52
Identity = 89/186 (47.85%), Postives = 128/186 (68.82%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKP 555
            ++ EA+  VVPV++++TP+K  P++P + Y P+ C    CR+VLNP   VD+ AK+W C FC+QRN FPP YA IS+ N PAEL PQ++TIEY        +P  F++VVDT + ++++  LK +L  ++ LLP  +LVGLITFG +V VHELG   I K+YVF+G+KD++ +QL E +   L KP
Sbjct:   27 SRLEATRMVVPVASLFTPLKERPDLPPIQYEPVLCSRATCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISEVNQPAELLPQFSTIEYVVQ-RGPQMPLNFLYVVDTCMEDDDLQALKESLQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLNAKQLQEMLG--LTKP 209

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2VPN7_GOSRA	2.020e-144	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UVW3_GOSRA	3.434e-144	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UW96_GOSRA	6.829e-144	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TB59_GOSRA	1.517e-143	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FTE4_THECC	8.680e-138	95.19	Sec23/Sec24 protein transport family protein isofo...	[more]
A0A061FTV4_THECC	1.961e-134	95.19	Sec23/Sec24 protein transport family protein isofo...	[more]
B9SKJ9_RICCO	1.088e-128	89.42	Protein transport protein sec23, putative OS=Ricin...	[more]
A0A0A0KD02_CUCSA	3.424e-126	86.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
A0A067HBX3_CITSI	6.014e-123	83.80	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067HC62_CITSI	1.690e-122	83.80	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
SEC23_NEOFI	5.750e-53	49.73	Protein transport protein sec23 OS=Neosartorya fis...	[more]
SEC23_ASPFU	5.981e-53	49.73	Protein transport protein sec23 OS=Neosartorya fum...	[more]
SC23A_XENTR	7.082e-53	47.51	Protein transport protein Sec23A OS=Xenopus tropic...	[more]
SEC23_CRYNJ	7.242e-53	47.80	Protein transport protein SEC23 OS=Cryptococcus ne...	[more]
SEC23_CRYNB	7.242e-53	47.80	Protein transport protein SEC23 OS=Cryptococcus ne...	[more]
SC23A_HUMAN	7.365e-53	47.83	Protein transport protein Sec23A OS=Homo sapiens G...	[more]
SC23A_BOVIN	1.181e-52	48.07	Protein transport protein Sec23A OS=Bos taurus GN=...	[more]
SC23A_PONAB	2.231e-52	47.83	Protein transport protein Sec23A OS=Pongo abelii G...	[more]
SEC23_PHANO	3.256e-52	43.54	Protein transport protein SEC23 OS=Phaeosphaeria n...	[more]
SC23A_DANRE	6.014e-52	47.85	Protein transport protein Sec23A OS=Danio rerio GN...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002035	von Willebrand factor, type A	GENE3D	3.40.50.410		coord: 77..161 e-value: 1.9E-28 score: 99.0
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 76..159
IPR006895	Zinc finger, Sec23/Sec24-type	PFAM	PF04810	zf-Sec23_Sec24	coord: 8..46 e-value: 2.1E-18 score: 65.9
IPR006895	Zinc finger, Sec23/Sec24-type	SUPERFAMILY	82919	Zn-finger domain of Sec23/24	coord: 2..71
IPR006896	Sec23/Sec24, trunk domain	PFAM	PF04811	Sec23_trunk	coord: 77..153 e-value: 1.8E-17 score: 63.6
None	No IPR available	PANTHER	PTHR11141	PROTEIN TRANSPORT PROTEIN SEC23	coord: 1..183
None	No IPR available	PANTHER	PTHR11141:SF2	SUBFAMILY NOT NAMED	coord: 1..183

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0016361 ID=g.arboreum_cottongen_reftransV1_0016361; Name=g.arboreum_cottongen_reftransV1_0016361; organism=Gossypium arboreum; type=contig; length=624bp
GGGACAAAGCAAGAGGCAAGTAACTGTGTGGTGCCAGTGTCAGCCGTCTA
CACTCCGATCAAACCATTCCCCAACATGCCGGTCCTACCCTATGCTCCTC
TCCGTTGCCGCAATTGCCGCTCTGTCCTCAACCCCTTCTCCATCGTGGAT
TTTGCTGCCAAGATTTGGATCTGCCCCTTCTGCTTCCAGCGCAATCACTT
CCCTCCCCACTATGCCTCCATCTCAGACGAAAATCTCCCTGCTGAGCTCT
TCCCTCAGTACACCACCATTGAGTACCAATCCCCAGGGGAGGCCTCCTCC
ATTCCTCCTGTCTTCATGTTCGTTGTTGACACCTCCATTATTGAAGAGGA
AATGGCATTCCTGAAGTCTGCATTGTCCCAGGCCATAGGCCTTTTGCCCG
ACAACTCTCTTGTTGGTTTGATCACATTTGGCACCCTCGTTCATGTGCAT
GAGCTTGGCTTCAATACCATTCCTAAGACCTATGTCTTCAAGGGCTCCAA
GGATGTCTCTAAAGAACAGCTTCTTGAGCAGATGAACTTCTTCCTTATCA
AGCCCAAGCCCCCCACTGGTGTCATTGCTGGTGCCAGAGATGGCCTGTCT
TCTGAGAGCATTGCCCGATTCCTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002035	VWF_A
IPR006895	Znf_Sec23_Sec24
IPR006896	Sec23/24_trunk_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006886	intracellular protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0030127	COPII vesicle coat

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Search form

g.arboreum_cottongen_reftransV1_0016361, g.arboreum_cottongen_reftransV1_0016361 (contig) Gossypium arboreum

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