g.arboreum_cottongen_reftransV1_0006910, g.arboreum_cottongen_reftransV1_0006910 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006910
Unique Nameg.arboreum_cottongen_reftransV1_0006910
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length380
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12chromosomeg.arboreum_cottongen_reftransV1_0006910:1..380 .
Chr12:130011593..130011972 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: D7ST93_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00480 PE=4 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.837e-42
Identity = 73/102 (71.57%), Postives = 86/102 (84.31%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRA 306
            KAL SVSLIGLY+  +D DL A+VI ELS WF  S V SW HLRTYR+GFAQPNQSPPT+L+++P IG G+Y+CGD++TSATFDGALVSG RAVEALL+DR 
Sbjct:  358 KALVSVSLIGLYDAVSDADLTAQVIGELSDWFGESIVGSWEHLRTYRVGFAQPNQSPPTNLVQDPRIGSGIYVCGDHVTSATFDGALVSGGRAVEALLRDRV 459          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: M0ZW80_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003660 PE=4 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.347e-41
Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309
            KAL S +L+G+Y + AD+DL  +V+KELSGWF  S V SW +LR YRIGFAQPNQ PPT+L KNP I PGLY+CGDY+TSATFDGALVSG+ A E LL+DRAL
Sbjct:  373 KALVSATLVGIYGDVADEDLVDQVVKELSGWFGESVVGSWSYLRMYRIGFAQPNQCPPTNLKKNPIIKPGLYICGDYVTSATFDGALVSGKIAAETLLQDRAL 475          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: K4BAK9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g083410.2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.385e-41
Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309
            KAL SV+L+GLY + AD+DL   V+KELSGWF  S V SW +LR YRIGFAQPNQ PPT+L KNP + PGLY+CGDY+TSATFDGALVSG++A E LL+D+AL
Sbjct:  372 KALVSVTLVGLYGDVADEDLVDRVVKELSGWFGESVVGSWGYLRMYRIGFAQPNQCPPTNLKKNPKVKPGLYICGDYVTSATFDGALVSGKKAAETLLQDKAL 474          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A022PQC8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006206mg PE=4 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.185e-40
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318
            K L SVSLIG YE   D++L   V++ELSGWF +  V  WR++R YR+GFAQPNQ PPT+LMK+P +  GLY+CGDY+TSATFDGALVSG+RAVEALLKDR +  V
Sbjct:  348 KGLVSVSLIGSYEGVPDEELVKRVVEELSGWFGSEAVGWWRYMRMYRVGFAQPNQCPPTNLMKDPKLKEGLYICGDYVTSATFDGALVSGKRAVEALLKDRTIVKV 453          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: M5WM08_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022175mg PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.929e-40
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318
            KAL SVSL+G +E   DDDL  +V++ELS WF +S V SWRHLRTYRI FAQPNQ PP +  ++P +G G+Y+CGD+ T+ATFDGALVSGRRA EALL+D AL+ V
Sbjct:  322 KALVSVSLVGYFEGVDDDDLTTQVVRELSDWFGSSMVRSWRHLRTYRIKFAQPNQCPPLNSTRDPRVGFGVYVCGDHWTTATFDGALVSGRRAAEALLRDNALSRV 427          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7ST93_VITVI2.837e-4271.57Putative uncharacterized protein OS=Vitis vinifera... [more]
M0ZW80_SOLTU1.347e-4168.93Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K4BAK9_SOLLC4.385e-4168.93Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A022PQC8_ERYGU1.185e-4065.09Uncharacterized protein OS=Erythranthe guttata GN=... [more]
M5WM08_PRUPE7.929e-4064.15Uncharacterized protein (Fragment) OS=Prunus persi... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002937Amine oxidasePFAMPF01593Amino_oxidasecoord: 9..96
e-value: 4.2E-8
score: 32.8
IPR023753FAD/NAD(P)-binding domainGENE3D3.50.50.60coord: 63..99
e-value: 2.5E-7
score: 29.9
NoneNo IPR availablePANTHERPTHR10742AMINE OXIDASEcoord: 1..101
NoneNo IPR availablePANTHERPTHR10742:SF287PROTEIN GLF-1coord: 1..101

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006910 ID=g.arboreum_cottongen_reftransV1_0006910; Name=g.arboreum_cottongen_reftransV1_0006910; organism=Gossypium arboreum; type=contig; length=380bp
AAAGCATTGGCGTCGGTATCGTTGATTGGGTTGTACGAGAACACCGCCGA
TGATGATCTAAGAGCTGAGGTTATTAAGGAGCTTTCGGGTTGGTTCGAAG
CTTCAAAAGTCGAGTCATGGCGGCACTTAAGAACATATCGAATCGGTTTT
GCACAGCCGAACCAATCACCACCTACGGATTTGATGAAGAATCCCGACAT
CGGACCGGGTTTGTATTTGTGTGGTGATTATATGACTTCGGCTACCTTTG
ATGGAGCTCTGGTTTCAGGTAGAAGAGCGGTGGAAGCTTTGTTAAAAGAC
CGGGCATTGGCTCTGGTTTAAGAAAACCATTGTAGATATCGAATTCTTTT
TTCATGAACATTAGCAAGAACTACTTCATT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002937Amino_oxidase
IPR023753FAD/NAD-binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114obsolete oxidation-reduction process