g.arboreum_cottongen_reftransV1_0006910, g.arboreum_cottongen_reftransV1_0006910 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: D7ST93_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00480 PE=4 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.837e-42 Identity = 73/102 (71.57%), Postives = 86/102 (84.31%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRA 306 KAL SVSLIGLY+ +D DL A+VI ELS WF S V SW HLRTYR+GFAQPNQSPPT+L+++P IG G+Y+CGD++TSATFDGALVSG RAVEALL+DR Sbjct: 358 KALVSVSLIGLYDAVSDADLTAQVIGELSDWFGESIVGSWEHLRTYRVGFAQPNQSPPTNLVQDPRIGSGIYVCGDHVTSATFDGALVSGGRAVEALLRDRV 459
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: M0ZW80_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003660 PE=4 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 1.347e-41 Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309 KAL S +L+G+Y + AD+DL +V+KELSGWF S V SW +LR YRIGFAQPNQ PPT+L KNP I PGLY+CGDY+TSATFDGALVSG+ A E LL+DRAL Sbjct: 373 KALVSATLVGIYGDVADEDLVDQVVKELSGWFGESVVGSWSYLRMYRIGFAQPNQCPPTNLKKNPIIKPGLYICGDYVTSATFDGALVSGKIAAETLLQDRAL 475
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: K4BAK9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g083410.2 PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 4.385e-41 Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309 KAL SV+L+GLY + AD+DL V+KELSGWF S V SW +LR YRIGFAQPNQ PPT+L KNP + PGLY+CGDY+TSATFDGALVSG++A E LL+D+AL Sbjct: 372 KALVSVTLVGLYGDVADEDLVDRVVKELSGWFGESVVGSWGYLRMYRIGFAQPNQCPPTNLKKNPKVKPGLYICGDYVTSATFDGALVSGKKAAETLLQDKAL 474
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A022PQC8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006206mg PE=4 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 1.185e-40 Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318 K L SVSLIG YE D++L V++ELSGWF + V WR++R YR+GFAQPNQ PPT+LMK+P + GLY+CGDY+TSATFDGALVSG+RAVEALLKDR + V Sbjct: 348 KGLVSVSLIGSYEGVPDEELVKRVVEELSGWFGSEAVGWWRYMRMYRVGFAQPNQCPPTNLMKDPKLKEGLYICGDYVTSATFDGALVSGKRAVEALLKDRTIVKV 453
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: M5WM08_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022175mg PE=4 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 7.929e-40 Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318 KAL SVSL+G +E DDDL +V++ELS WF +S V SWRHLRTYRI FAQPNQ PP + ++P +G G+Y+CGD+ T+ATFDGALVSGRRA EALL+D AL+ V Sbjct: 322 KALVSVSLVGYFEGVDDDDLTTQVVRELSDWFGSSMVRSWRHLRTYRIKFAQPNQCPPLNSTRDPRVGFGVYVCGDHWTTATFDGALVSGRRAAEALLRDNALSRV 427 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006910 ID=g.arboreum_cottongen_reftransV1_0006910; Name=g.arboreum_cottongen_reftransV1_0006910; organism=Gossypium arboreum; type=contig; length=380bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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