g.arboreum_cottongen_reftransV1_0006910, g.arboreum_cottongen_reftransV1_0006910 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: D7L8A1_ARALL (Amine oxidase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_478278 PE=4 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 4.951e-45 Identity = 77/103 (74.76%), Postives = 87/103 (84.47%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309 KAL SVSLIG +E+ +DDDL AEVI ELSGWF S V SW+HL+TYRI FAQPNQ PPTDL+KNP +G GLYL GDYMTSATFDGALVSGRRAVE LL+++ L Sbjct: 374 KALVSVSLIGSFEDRSDDDLAAEVISELSGWFGESSVMSWKHLKTYRIQFAQPNQCPPTDLVKNPRVGSGLYLSGDYMTSATFDGALVSGRRAVEVLLREKGL 476
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A067KBE3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07023 PE=4 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 5.255e-45 Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318 K L SVSLIGL+E+ +DDDL A+V++ELSGWF +S VESW++LRTYRI FAQPNQ PPTDLMK + GLYLCGDYMTSATFDGALVSGR+AVEALL D AL V Sbjct: 730 KVLVSVSLIGLFEDISDDDLTAKVVRELSGWFGSSMVESWKYLRTYRIEFAQPNQCPPTDLMKKSQVASGLYLCGDYMTSATFDGALVSGRKAVEALLADTALTRV 835 HSP 2 Score: 137.117 bits (344), Expect = 1.211e-34 Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDG 255 K L SVSLIGL+E+ +DDDL A+V++ELSGWF +S VESW++LRTYRI FAQPNQ PPTDLMK + GLYLCGDYMTSATFD Sbjct: 379 KVLVSVSLIGLFEDISDDDLTAKVVRELSGWFGSSMVESWKYLRTYRIEFAQPNQCPPTDLMKKSQVASGLYLCGDYMTSATFDA 463
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: Q9SF45_ARATH (FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana GN=F11F8_15 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 2.010e-44 Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309 KAL SVSLIGL+E+ DDDL AEV++ELSGWF S V SW+HL+TYRI FAQPNQ PPTDL+K+P +G GLYL GDYMTSATFDGALVSGRRAVE LL++ L Sbjct: 373 KALVSVSLIGLFEDRTDDDLAAEVLRELSGWFGESPVMSWKHLKTYRIQFAQPNQCPPTDLVKSPRVGSGLYLSGDYMTSATFDGALVSGRRAVEVLLRETGL 475
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: R0I6N3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015330mg PE=4 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 2.972e-44 Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309 KAL SVSLIG +E+ +DDDL EV++ELSGWF S V SW+HL+TYRI FAQPNQ PPTDL+K+P + GLYLCGDYMTSATFDGALVSGRRAVE LL+++ L Sbjct: 373 KALVSVSLIGSFEDRSDDDLATEVLRELSGWFSESSVMSWKHLKTYRIKFAQPNQCPPTDLVKSPRVRTGLYLCGDYMTSATFDGALVSGRRAVEVLLREKGL 475
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: V7CQ56_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G206500g PE=4 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 3.576e-44 Identity = 74/104 (71.15%), Postives = 85/104 (81.73%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312 KAL SVSLIG++E +DD+L +VI+ELSGWF V W+HLRTYRIGFAQPNQ PPTDL KNP + GLY+CGDY+TSATFDGALVSGRRA E+LLKDRA Sbjct: 372 KALVSVSLIGVFEGVSDDELVGKVIEELSGWFGGKIVGEWKHLRTYRIGFAQPNQCPPTDLKKNPRVESGLYVCGDYLTSATFDGALVSGRRASESLLKDRAFT 475
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: B9GI66_POPTR (Amine oxidase family protein OS=Populus trichocarpa GN=POPTR_0001s35370g PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 6.420e-44 Identity = 74/106 (69.81%), Postives = 87/106 (82.08%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318 KAL SV+LIGL+++T+D DL EVI ELSGWF S V SW+ LRTYR+ +AQPNQ PPT+LMKNP IG GLYLCGD++TSATFDGAL SGR+A EALL+DRA V Sbjct: 251 KALVSVTLIGLFDDTSDHDLVDEVISELSGWFGGSMVGSWKPLRTYRVRYAQPNQCPPTNLMKNPQIGSGLYLCGDHLTSATFDGALASGRKAAEALLRDRAFIKV 356
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: W9SB51_9ROSA (15-cis-phytoene desaturase OS=Morus notabilis GN=L484_010088 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 6.555e-44 Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312 KAL SVSLIG +E +D DL AEV++E+S WF+ + V SW+HLRTYRI FAQPNQSPPT+LMK+P +GPGLYLCGD +TSATFDGALVSG RA EALL+D A+ Sbjct: 376 KALVSVSLIGRFEGVSDKDLTAEVVREISRWFKGTDVGSWKHLRTYRIAFAQPNQSPPTNLMKDPRVGPGLYLCGDQLTSATFDGALVSGTRAAEALLRDGAVV 479
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: V4V1Q1_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10004047mg PE=4 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 1.980e-43 Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNP--DIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309 KAL SVSLIGL+ + DD+L AEVI+ELS WF S V SWRHLRTYR+ FAQPNQSPPTDL+KNP + +YLCGDYMTSATFDGALVSGR+AV+ALL+DRA Sbjct: 340 KALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLCGDYMTSATFDGALVSGRKAVDALLRDRAF 444
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A072UNG5_MEDTR (Amine oxidase OS=Medicago truncatula GN=MTR_4g094295 PE=4 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.239e-43 Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309 KAL SVSLIGL+E+ ++D+L +VI+ELSGWF V+ W+HLRTYRI +AQPNQ PPT+L KNP I GLYLCGDY+TSATFDGALVSGRRA E+LL DRA Sbjct: 366 KALISVSLIGLFEDVSEDELVLKVIQELSGWFGDKMVKEWKHLRTYRIEYAQPNQCPPTNLKKNPTIEQGLYLCGDYLTSATFDGALVSGRRAAESLLNDRAF 468
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A0A0LCJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822340 PE=4 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.818e-43 Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318 KAL SVSLIG +E D+DL AEVI+E+ WF S VE W+HLRTYRI FAQPNQSPP D+MK+P + GLY+CGDY+TSATFDGALV+GR+AVEAL++DRA+ V Sbjct: 368 KALVSVSLIGKFEGVEDEDLTAEVIREMGDWFGESTVEGWKHLRTYRIEFAQPNQSPPWDVMKDPTVENGLYVCGDYLTSATFDGALVAGRKAVEALVRDRAVIYV 473 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006910 ID=g.arboreum_cottongen_reftransV1_0006910; Name=g.arboreum_cottongen_reftransV1_0006910; organism=Gossypium arboreum; type=contig; length=380bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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