g.arboreum_cottongen_reftransV1_0006910, g.arboreum_cottongen_reftransV1_0006910 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006910
Unique Nameg.arboreum_cottongen_reftransV1_0006910
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0006910:1..380 .
Chr12:130011593..130011972 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: D7L8A1_ARALL (Amine oxidase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_478278 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.951e-45
Identity = 77/103 (74.76%), Postives = 87/103 (84.47%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309
            KAL SVSLIG +E+ +DDDL AEVI ELSGWF  S V SW+HL+TYRI FAQPNQ PPTDL+KNP +G GLYL GDYMTSATFDGALVSGRRAVE LL+++ L
Sbjct:  374 KALVSVSLIGSFEDRSDDDLAAEVISELSGWFGESSVMSWKHLKTYRIQFAQPNQCPPTDLVKNPRVGSGLYLSGDYMTSATFDGALVSGRRAVEVLLREKGL 476          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A067KBE3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07023 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.255e-45
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318
            K L SVSLIGL+E+ +DDDL A+V++ELSGWF +S VESW++LRTYRI FAQPNQ PPTDLMK   +  GLYLCGDYMTSATFDGALVSGR+AVEALL D AL  V
Sbjct:  730 KVLVSVSLIGLFEDISDDDLTAKVVRELSGWFGSSMVESWKYLRTYRIEFAQPNQCPPTDLMKKSQVASGLYLCGDYMTSATFDGALVSGRKAVEALLADTALTRV 835          

HSP 2 Score: 137.117 bits (344), Expect = 1.211e-34
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDG 255
            K L SVSLIGL+E+ +DDDL A+V++ELSGWF +S VESW++LRTYRI FAQPNQ PPTDLMK   +  GLYLCGDYMTSATFD 
Sbjct:  379 KVLVSVSLIGLFEDISDDDLTAKVVRELSGWFGSSMVESWKYLRTYRIEFAQPNQCPPTDLMKKSQVASGLYLCGDYMTSATFDA 463          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: Q9SF45_ARATH (FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana GN=F11F8_15 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.010e-44
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309
            KAL SVSLIGL+E+  DDDL AEV++ELSGWF  S V SW+HL+TYRI FAQPNQ PPTDL+K+P +G GLYL GDYMTSATFDGALVSGRRAVE LL++  L
Sbjct:  373 KALVSVSLIGLFEDRTDDDLAAEVLRELSGWFGESPVMSWKHLKTYRIQFAQPNQCPPTDLVKSPRVGSGLYLSGDYMTSATFDGALVSGRRAVEVLLRETGL 475          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: R0I6N3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015330mg PE=4 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.972e-44
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309
            KAL SVSLIG +E+ +DDDL  EV++ELSGWF  S V SW+HL+TYRI FAQPNQ PPTDL+K+P +  GLYLCGDYMTSATFDGALVSGRRAVE LL+++ L
Sbjct:  373 KALVSVSLIGSFEDRSDDDLATEVLRELSGWFSESSVMSWKHLKTYRIKFAQPNQCPPTDLVKSPRVRTGLYLCGDYMTSATFDGALVSGRRAVEVLLREKGL 475          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: V7CQ56_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G206500g PE=4 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.576e-44
Identity = 74/104 (71.15%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312
            KAL SVSLIG++E  +DD+L  +VI+ELSGWF    V  W+HLRTYRIGFAQPNQ PPTDL KNP +  GLY+CGDY+TSATFDGALVSGRRA E+LLKDRA  
Sbjct:  372 KALVSVSLIGVFEGVSDDELVGKVIEELSGWFGGKIVGEWKHLRTYRIGFAQPNQCPPTDLKKNPRVESGLYVCGDYLTSATFDGALVSGRRASESLLKDRAFT 475          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: B9GI66_POPTR (Amine oxidase family protein OS=Populus trichocarpa GN=POPTR_0001s35370g PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.420e-44
Identity = 74/106 (69.81%), Postives = 87/106 (82.08%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318
            KAL SV+LIGL+++T+D DL  EVI ELSGWF  S V SW+ LRTYR+ +AQPNQ PPT+LMKNP IG GLYLCGD++TSATFDGAL SGR+A EALL+DRA   V
Sbjct:  251 KALVSVTLIGLFDDTSDHDLVDEVISELSGWFGGSMVGSWKPLRTYRVRYAQPNQCPPTNLMKNPQIGSGLYLCGDHLTSATFDGALASGRKAAEALLRDRAFIKV 356          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: W9SB51_9ROSA (15-cis-phytoene desaturase OS=Morus notabilis GN=L484_010088 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.555e-44
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312
            KAL SVSLIG +E  +D DL AEV++E+S WF+ + V SW+HLRTYRI FAQPNQSPPT+LMK+P +GPGLYLCGD +TSATFDGALVSG RA EALL+D A+ 
Sbjct:  376 KALVSVSLIGRFEGVSDKDLTAEVVREISRWFKGTDVGSWKHLRTYRIAFAQPNQSPPTNLMKDPRVGPGLYLCGDQLTSATFDGALVSGTRAAEALLRDGAVV 479          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: V4V1Q1_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10004047mg PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.980e-43
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNP--DIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309
            KAL SVSLIGL+ +  DD+L AEVI+ELS WF  S V SWRHLRTYR+ FAQPNQSPPTDL+KNP  +    +YLCGDYMTSATFDGALVSGR+AV+ALL+DRA 
Sbjct:  340 KALISVSLIGLFADVMDDNLTAEVIRELSDWFGKSTVGSWRHLRTYRVRFAQPNQSPPTDLIKNPKSEFSLAVYLCGDYMTSATFDGALVSGRKAVDALLRDRAF 444          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A072UNG5_MEDTR (Amine oxidase OS=Medicago truncatula GN=MTR_4g094295 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.239e-43
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309
            KAL SVSLIGL+E+ ++D+L  +VI+ELSGWF    V+ W+HLRTYRI +AQPNQ PPT+L KNP I  GLYLCGDY+TSATFDGALVSGRRA E+LL DRA 
Sbjct:  366 KALISVSLIGLFEDVSEDELVLKVIQELSGWFGDKMVKEWKHLRTYRIEYAQPNQCPPTNLKKNPTIEQGLYLCGDYLTSATFDGALVSGRRAAESLLNDRAF 468          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A0A0LCJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822340 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.818e-43
Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318
            KAL SVSLIG +E   D+DL AEVI+E+  WF  S VE W+HLRTYRI FAQPNQSPP D+MK+P +  GLY+CGDY+TSATFDGALV+GR+AVEAL++DRA+  V
Sbjct:  368 KALVSVSLIGKFEGVEDEDLTAEVIREMGDWFGESTVEGWKHLRTYRIEFAQPNQSPPWDVMKDPTVENGLYVCGDYLTSATFDGALVAGRKAVEALVRDRAVIYV 473          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7L8A1_ARALL4.951e-4574.76Amine oxidase family protein OS=Arabidopsis lyrata... [more]
A0A067KBE3_JATCU5.255e-4573.58Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
Q9SF45_ARATH2.010e-4473.79FAD/NAD(P)-binding oxidoreductase family protein O... [more]
R0I6N3_9BRAS2.972e-4471.84Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
V7CQ56_PHAVU3.576e-4471.15Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
B9GI66_POPTR6.420e-4469.81Amine oxidase family protein OS=Populus trichocarp... [more]
W9SB51_9ROSA6.555e-4470.1915-cis-phytoene desaturase OS=Morus notabilis GN=L... [more]
V4V1Q1_9ROSI1.980e-4372.38Uncharacterized protein (Fragment) OS=Citrus cleme... [more]
A0A072UNG5_MEDTR8.239e-4369.90Amine oxidase OS=Medicago truncatula GN=MTR_4g0942... [more]
A0A0A0LCJ0_CUCSA8.818e-4367.92Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002937Amine oxidasePFAMPF01593Amino_oxidasecoord: 9..96
e-value: 4.2E-8
score: 32.8
IPR023753FAD/NAD(P)-binding domainGENE3D3.50.50.60coord: 63..99
e-value: 2.5E-7
score: 29.9
NoneNo IPR availablePANTHERPTHR10742AMINE OXIDASEcoord: 1..101
NoneNo IPR availablePANTHERPTHR10742:SF287PROTEIN GLF-1coord: 1..101

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006910 ID=g.arboreum_cottongen_reftransV1_0006910; Name=g.arboreum_cottongen_reftransV1_0006910; organism=Gossypium arboreum; type=contig; length=380bp
AAAGCATTGGCGTCGGTATCGTTGATTGGGTTGTACGAGAACACCGCCGA
TGATGATCTAAGAGCTGAGGTTATTAAGGAGCTTTCGGGTTGGTTCGAAG
CTTCAAAAGTCGAGTCATGGCGGCACTTAAGAACATATCGAATCGGTTTT
GCACAGCCGAACCAATCACCACCTACGGATTTGATGAAGAATCCCGACAT
CGGACCGGGTTTGTATTTGTGTGGTGATTATATGACTTCGGCTACCTTTG
ATGGAGCTCTGGTTTCAGGTAGAAGAGCGGTGGAAGCTTTGTTAAAAGAC
CGGGCATTGGCTCTGGTTTAAGAAAACCATTGTAGATATCGAATTCTTTT
TTCATGAACATTAGCAAGAACTACTTCATT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002937Amino_oxidase
IPR023753FAD/NAD-binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114obsolete oxidation-reduction process