g.arboreum_cottongen_reftransV1_0015403, g.arboreum_cottongen_reftransV1_0015403 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy TrEMBL
Match: A0A0B2R1Y3_GLYSO (Putative E3 ubiquitin-protein ligase HERC3 OS=Glycine soja GN=glysoja_007778 PE=4 SV=1) HSP 1 Score: 771.926 bits (1992), Expect = 0.000e+0 Identity = 369/485 (76.08%), Postives = 424/485 (87.42%), Query Frame = -3 Query: 328 MADRSRLFSIDDLPSHLILEILTTGKRLSAVDLVSLELTSRTFGGCHGVYPTKCRSLVDLAAFQLCMTNGIYIGMSCSSQRDIFERCDGNWKRLLRFLQSVEQSSDMVQTSAGNMQITTGRYHTLLIRNSSVYSCGSSLCGVLGHGPETTQCVAFTRINFPSLANVIQVSASQNHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGHDTLRGCLEPTEIFIHEMEDE 1782 M DR R FSI++LPSHL+LEIL +G RLSA+DLV LELTS+TFGG HG++P K +SLVD AAFQLC ++ + M +SQR++++RC GNWKR+LRFLQSVEQSS MV+TS+GNMQITTG+YHTLLI NSSVYSCGS LCGVLG G ETTQCVAFTRI+ P L V+ VSAS NHAAFV+QSGEVFTCGDNSS CCGHRDT RPIFRPRLVE++KGIPCKQVAAGLNFTVFLTRQG VYTCGTNTHGQLGHGDTQDRPTPK +E+L SVVQIAAGPSY+L+VT+NG VYSFGSG+NFCLGHGEQ +E QPR IQ F+RKG+H++RVSAGDEH VA+DS+G+VYTWGKGYCG LGHGDEI+KT PE L SLK QL VQVCARKRKTFVLV+ G+VYGFG MGFGSLGF DR VSDK+++PR+LD LR H VSQ+STGLYHTVV+T RG++FGFGDNERAQLGHDTLR CLEPT+IFI + ++ Sbjct: 1 MGDRCRHFSIEELPSHLVLEILCSG-RLSAMDLVCLELTSKTFGGSHGLHPFKFKSLVDFAAFQLCASHVTFARMGLNSQRELYDRCGGNWKRVLRFLQSVEQSSQMVETSSGNMQITTGKYHTLLISNSSVYSCGSGLCGVLGQGSETTQCVAFTRIDSPPLPRVVHVSASFNHAAFVMQSGEVFTCGDNSSSCCGHRDTTRPIFRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHVYTCGTNTHGQLGHGDTQDRPTPKMIEVLS---SVVQIAAGPSYILSVTENGTVYSFGSGANFCLGHGEQHDELQPRPIQKFRRKGIHIVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPELLTSLKNQLVVQVCARKRKTFVLVNSGSVYGFGSMGFGSLGFLDRRVSDKVLKPRILDTLRAHHVSQISTGLYHTVVITSRGQIFGFGDNERAQLGHDTLRSCLEPTQIFIKDTSED 481
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy TrEMBL
Match: D7L437_ARALL (Regulator of chromosome condensation family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_478986 PE=4 SV=1) HSP 1 Score: 771.541 bits (1991), Expect = 0.000e+0 Identity = 365/480 (76.04%), Postives = 413/480 (86.04%), Query Frame = -3 Query: 343 MADRSRLFSIDDLPSHLILEILTTGKRLSAVDLVSLELTSRTFGGCHGVYPTKCRSLVDLAAFQLCMTNGIYIGMSCSSQRDIFERCDGNWKRLLRFLQSVEQSSDMVQTSAGNMQITTGRYHTLLIRNSSVYSCGSSLCGVLGHGPETTQCVAFTRINFPSLANVIQVSASQNHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGHDTLRGCLEPTEIFIH 1782 MADR+ L S +DLPSHLILE+LT+GK LSAVDL+SLELTS+ FGG HG YP K RSL D AA QLC + +Y+GM ++Q+++F C+GNWKRLL FLQSVEQSSDMV+TS G MQI TG+YHTLLI NS VYSCG SL GVL HGPETTQCVAFT I FP A V QVSA+QNH+AFVLQSGEV TCGDNSS CCGH DT RPIFRP+LVE +KG PCKQVAAGL+FTVFL+R+G YTCG+NTHGQLGHGDT DRP PK VE L+ +G VVQIAAGPSYVL VT +G VYSFGSGSNFCLGHGEQQ+E QPR IQ FKRKG+H+LRVSAGDEH VA+DS+G VYTWGKGYCG LGHGDE DK P+ L++LK LAVQVCARKRKTFVLV+GG +YGFGWMGFGSLGFPDRGVSDK++RPR+L+CL+ HRVSQVSTGLYHT+VVT GR+FGFGDNERAQLGH++LRGCLEPTEIF+H Sbjct: 1 MADRNWLISFEDLPSHLILEVLTSGK-LSAVDLLSLELTSKVFGGSHGFYPLKFRSLADYAASQLCSMHPVYVGMGLTTQKELFANCEGNWKRLLSFLQSVEQSSDMVETSQGKMQIATGKYHTLLINNSKVYSCGVSLSGVLAHGPETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQSGEVLTCGDNSSHCCGHLDTSRPIFRPKLVEVLKGTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGHGDTMDRPAPKVVEFLKNIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLKNCLAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQGGRIFGFGDNERAQLGHNSLRGCLEPTEIFLH 479
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy TrEMBL
Match: Q9LDU3_ARATH (Genomic DNA, chromosome 3, P1 clone: MJK13 OS=Arabidopsis thaliana GN=MJK13.9 PE=2 SV=1) HSP 1 Score: 768.459 bits (1983), Expect = 0.000e+0 Identity = 364/480 (75.83%), Postives = 412/480 (85.83%), Query Frame = -3 Query: 343 MADRSRLFSIDDLPSHLILEILTTGKRLSAVDLVSLELTSRTFGGCHGVYPTKCRSLVDLAAFQLCMTNGIYIGMSCSSQRDIFERCDGNWKRLLRFLQSVEQSSDMVQTSAGNMQITTGRYHTLLIRNSSVYSCGSSLCGVLGHGPETTQCVAFTRINFPSLANVIQVSASQNHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGHDTLRGCLEPTEIFIH 1782 MADR+ L S +DLPSHLILE+LT+G RLSAVDL+SLELTS+ FGG HG YP K RSL D AA QLC + +Y+GM ++Q+++F C+GNWKRL FLQSVEQSSDMV+TS G MQI TG+YHTLLI NS VYSCG SL GVL HG ETTQCVAFT I FP A V QVSA+QNH+AFVLQSG+V TCGDNSS CCGH DT RPIFRP+LVEA+KG PCKQVAAGL+FTVFL+R+G YTCG+NTHGQLGHGDT DRP PK VE L+ +G VVQIAAGPSYVL VT +G VYSFGSGSNFCLGHGEQQ+E QPR IQ FKRKG+H+LRVSAGDEH VA+DS+G VYTWGKGYCG LGHGDE DK P+ L++L LAVQVCARKRKTFVLV+GG +YGFGWMGFGSLGFPDRGVSDK++RPR+L+CL+ HRVSQVSTGLYHT+VVT RGR+FGFGDNERAQLGHD+LRGCLEPTEIF+H Sbjct: 1 MADRNCLISFEDLPSHLILEVLTSG-RLSAVDLLSLELTSKVFGGSHGFYPLKFRSLADYAASQLCSMHPVYVGMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQGKMQIATGKYHTLLINNSKVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEPTEIFLH 479
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy TrEMBL
Match: Q94CF6_ARATH (Putative uncharacterized protein At3g15430 OS=Arabidopsis thaliana GN=At3g15430 PE=2 SV=1) HSP 1 Score: 767.689 bits (1981), Expect = 0.000e+0 Identity = 363/480 (75.62%), Postives = 412/480 (85.83%), Query Frame = -3 Query: 343 MADRSRLFSIDDLPSHLILEILTTGKRLSAVDLVSLELTSRTFGGCHGVYPTKCRSLVDLAAFQLCMTNGIYIGMSCSSQRDIFERCDGNWKRLLRFLQSVEQSSDMVQTSAGNMQITTGRYHTLLIRNSSVYSCGSSLCGVLGHGPETTQCVAFTRINFPSLANVIQVSASQNHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGHDTLRGCLEPTEIFIH 1782 MADR+ L S +DLPSHLILE+LT+G RLSAVDL+SLELTS+ FGG HG YP K RSL D AA QLC + +Y+GM ++Q+++F C+GNWKRL FLQSVEQSSDMV+TS G MQI TG+YHTLLI NS VYSCG SL GVL HG ETTQCVAFT I FP A V QVSA+QNH+AFVLQSG+V TCGDNSS CCGH DT RPIFRP+LVEA+KG PCKQVAAGL+FTVFL+R+G YTCG+NTHGQLGHGDT DRP PK VE L+ +G VVQIAAGPSYVL +T +G VYSFGSGSNFCLGHGEQQ+E QPR IQ FKRKG+H+LRVSAGDEH VA+DS+G VYTWGKGYCG LGHGDE DK P+ L++L LAVQVCARKRKTFVLV+GG +YGFGWMGFGSLGFPDRGVSDK++RPR+L+CL+ HRVSQVSTGLYHT+VVT RGR+FGFGDNERAQLGHD+LRGCLEPTEIF+H Sbjct: 1 MADRNCLISFEDLPSHLILEVLTSG-RLSAVDLLSLELTSKVFGGSHGFYPLKFRSLADYAASQLCSMHPVYVGMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQGKMQIATGKYHTLLINNSKVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLALTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEPTEIFLH 479
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy TrEMBL
Match: K4CH13_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g063300.2 PE=4 SV=1) HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0 Identity = 360/481 (74.84%), Postives = 414/481 (86.07%), Query Frame = -3 Query: 340 MADRSRLFSIDDLPSHLILEILTTGKRLSAVDLVSLELTSRTFGGCHGVYPTKCRSLVDLAAFQLCMTNGIYIGMSCSSQRDIFERCDGNWKRLLRFLQSVEQSSDMVQTSAGNMQITTGRYHTLLIRNSSVYSCGSSLCGVLGHGPETTQCVAFTRINFPSLANVIQVSASQNHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGHDTLRGCLEPTEIFIHE 1782 M DR R ++DLP HLILEIL G RL+ +DL+SLELTSRTF G HG++P K +SLVD AAFQLC + IY + C++Q ++ RC+GNWKRLLRFL +VEQSSDMV+TSAGNMQI +GRYHTLLI +S+ YSCGSSLCGVLGHGPETTQCV FTRI+FP V QVSAS NHAAFV SG+VFTCGDNSSFCCGHRDTGRPIFRPR+VEA+K IP KQVAAGL+FT+FLTR+G V+TCGTN HGQLGHGDT DRPTP +ELL +GSVVQIAAGPSY L V+D+G +YSFGSG+NFCLGHGEQQNE QPRAIQ+FKRKG++V RVSAGDEHVVA+DS+GYVYTWGKGYCG LGHGDE DKT P HL SLK LAVQVCA KRKTFVLVD G+VYGFGWMGFGSLGF DRG SDK+++PR+L+ LR+H +SQ+STGLYHTVVVT+ GR+FGFGDNERAQLGHD +RGCLEPTE+F+ + Sbjct: 1 MGDRLRSTLMEDLPVHLILEILMCG-RLAVIDLISLELTSRTFRGTHGLFPKKFKSLVDYAAFQLCGLSSIYASLHCNAQEELLTRCNGNWKRLLRFLMAVEQSSDMVETSAGNMQIRSGRYHTLLINDSAAYSCGSSLCGVLGHGPETTQCVEFTRISFPVPVQVAQVSASHNHAAFVTGSGQVFTCGDNSSFCCGHRDTGRPIFRPRMVEALKNIPVKQVAAGLSFTMFLTRKGHVFTCGTNGHGQLGHGDTSDRPTPTCIELLASIGSVVQIAAGPSYALAVSDDGTLYSFGSGTNFCLGHGEQQNELQPRAIQSFKRKGINVARVSAGDEHVVALDSTGYVYTWGKGYCGALGHGDETDKTTPSHLTSLKSHLAVQVCASKRKTFVLVDDGSVYGFGWMGFGSLGFLDRGASDKVLKPRILESLRSHHISQISTGLYHTVVVTNCGRVFGFGDNERAQLGHDAVRGCLEPTEMFMEK 480
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy Swiss-Prot
Match: RCBT2_PONAB (RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.369e-22 Identity = 78/275 (28.36%), Postives = 123/275 (44.73%), Query Frame = -3 Query: 580 NSSVYSCGSSLCGVLGHGPETTQCVAFTRINFPSLANVIQVS-ASQNHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQ-LAVQVCARKRKTFVLVDGGAVYGFG 1398 N ++ G++ CG LG G + + R++ + + +S S H GEVFT G N+ G+ T + + + +VA G ++ LT G V+ G N GQ+G G T ++P P+ V + VV IA G + V D G VY +G N LG G N QP + +G+ V RV+ G H + + G VY WG G+LG G++ +++ P + K + + + C + GG VY +G Sbjct: 64 NDEIFVLGTNCCGCLGLG-DVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGN--QPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWG 335 HSP 2 Score: 102.449 bits (254), Expect = 1.438e-21 Identity = 82/287 (28.57%), Postives = 137/287 (47.74%), Query Frame = -3 Query: 340 DTGR-PIFRPRLVEAMKGI--PCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLE-RVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLIS-LKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGHDTLRGCLEPTEIFIHE 1185 D G+ PIF E ++ I C +AG N ++ T ++ GTN G LG GD Q P+ ++ L + + + +GP VL T+ G V+++G + LG+G + P I T V+ V+ G H + + S G V+ WG G++G G +++ +P + L+ ++ V + + +VD G VY +G+ G G LG G S P + L+ RV +V+ G HT+V+T G+++ +G N QLG PT + + + Sbjct: 27 DVGKWPIFSLCSEEELQLIRQACVFGSAG-NEVLYTTVNDEIFVLGTNCCGCLGLGDVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLATTE-GEVFTWGHNAYSQLGNGTTNHGLVPCHIST-NLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGL---GNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEK 307 HSP 3 Score: 95.5153 bits (236), Expect = 2.821e-19 Identity = 70/238 (29.41%), Postives = 114/238 (47.90%), Query Frame = -3 Query: 556 NHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKG--IPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLG 1263 N + + E+F G N C G D I PR ++++ G I C +G + V T +G V+T G N + QLG+G T P + V+++A G + L +T +G V+++G ++ +G G N+ PR + + V V+ ++ G +AV +G VY WG G+LG G+ ++ P + +L+G +V T VL D G VY +G +G LG Sbjct: 56 NEVLYTTVNDEIFVLGTNCCGCLGLGDVQSTI-EPRRLDSLNGKKIACLSYGSGPHI-VLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKV-VVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG 290
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy Swiss-Prot
Match: RCBT2_HUMAN (RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.369e-22 Identity = 78/275 (28.36%), Postives = 123/275 (44.73%), Query Frame = -3 Query: 580 NSSVYSCGSSLCGVLGHGPETTQCVAFTRINFPSLANVIQVS-ASQNHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQ-LAVQVCARKRKTFVLVDGGAVYGFG 1398 N ++ G++ CG LG G + + R++ + + +S S H GEVFT G N+ G+ T + + + +VA G ++ LT G V+ G N GQ+G G T ++P P+ V + VV IA G + V D G VY +G N LG G N QP + +G+ V RV+ G H + + G VY WG G+LG G++ +++ P + K + + + C + GG VY +G Sbjct: 64 NDEIFVLGTNCCGCLGLG-DVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGN--QPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWG 335 HSP 2 Score: 102.449 bits (254), Expect = 1.438e-21 Identity = 82/287 (28.57%), Postives = 137/287 (47.74%), Query Frame = -3 Query: 340 DTGR-PIFRPRLVEAMKGI--PCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLE-RVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLIS-LKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGHDTLRGCLEPTEIFIHE 1185 D G+ PIF E ++ I C +AG N ++ T ++ GTN G LG GD Q P+ ++ L + + + +GP VL T+ G V+++G + LG+G + P I T V+ V+ G H + + S G V+ WG G++G G +++ +P + L+ ++ V + + +VD G VY +G+ G G LG G S P + L+ RV +V+ G HT+V+T G+++ +G N QLG PT + + + Sbjct: 27 DVGKWPIFSLCSEEELQLIRQACVFGSAG-NEVLYTTVNDEIFVLGTNCCGCLGLGDVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLATTE-GEVFTWGHNAYSQLGNGTTNHGLVPCHIST-NLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGL---GNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEK 307 HSP 3 Score: 95.5153 bits (236), Expect = 2.821e-19 Identity = 70/238 (29.41%), Postives = 114/238 (47.90%), Query Frame = -3 Query: 556 NHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKG--IPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLG 1263 N + + E+F G N C G D I PR ++++ G I C +G + V T +G V+T G N + QLG+G T P + V+++A G + L +T +G V+++G ++ +G G N+ PR + + V V+ ++ G +AV +G VY WG G+LG G+ ++ P + +L+G +V T VL D G VY +G +G LG Sbjct: 56 NEVLYTTVNDEIFVLGTNCCGCLGLGDVQSTI-EPRRLDSLNGKKIACLSYGSGPHI-VLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKV-VVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLG 290
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy Swiss-Prot
Match: RCC1_SCHPO (Protein pim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pim1 PE=1 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 9.861e-22 Identity = 98/371 (26.42%), Postives = 164/371 (44.20%), Query Frame = -3 Query: 388 SVYSCGSSLCGVLGHGPETTQCVAFTRINFPSLAN----VIQVSASQNHAAFVLQSGEVFTCGDNSSFCCG------HRDTGRPIFR------PRLVE-AMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTN--THGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGE-QQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDK-----TLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMR-----------PRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGH 1392 +VY GS LG G E V R+N P L+ V+ ++ H+A + G V+T G N + G + G + P VE A+ + +V N T +T G +T GT + G LG+ D+Q R T + ++ R+ + Q+A G +++ +T G VY++G+G F LG ++ Q Q K +++ V AG H A+D+ G VY WG + G E ++ T P + +L+G + + T L++ G V +G LG PD + + +++ P ++ L N V QV G +H + VT G+++ +G E ++G Sbjct: 72 NVYVFGSGSMNELGMGEEEMDVVYRPRLN-PILSTDKVGVVDLAVGGMHSAALSHDGRVYTWGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTKVICSDNLTAAITDNGCCFTWGTFRCSDGVLGYSDSQKR-TAEPTQM--RLPEICQLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALK--NIISVGAGSYHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIPGLTN--VIQVVCGTHHNLAVTSDGKVYSWGSAENYEVGQ 434 HSP 2 Score: 70.8626 bits (172), Expect = 1.410e-11 Identity = 54/190 (28.42%), Postives = 86/190 (45.26%), Query Frame = -3 Query: 787 SLANVIQVSASQNHAAFVLQSGEVFTCGDNSSFCCG----HRDTGRPIFRPRLVEAMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLER--------------VGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQ-PRAIQTFKRKGVHVLRVSAG 1299 +L N+I V A H+ + G V+ G N + CG + G I +P LV+A++G K + G + T+ L G V G + QLG D P+TV E+ + +V+Q+ G + L VT +G VYS+GS N+ +G G+ + P +++ K V + AG Sbjct: 277 ALKNIISVGAGSYHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLEDGRVLAWGRDDRHQLG---IPDNALPETVVKDEKGNNYYLSTPTIIPGLTNVIQVVCGTHHNLAVTSDGKVYSWGSAENYEVGQGDNDEDVAVPTLVRSKAIKEVAIRVAGAG 463 HSP 3 Score: 64.6994 bits (156), Expect = 1.198e-9 Identity = 65/230 (28.26%), Postives = 100/230 (43.48%), Query Frame = -3 Query: 376 PKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNE--FQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELG---------HGDEIDKTLPEHLIS-LKGQLA----VQVCARKRKTFVLVDGGAVYGFGWMGF----GSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGHDTLR 1005 PK V + + +I P+ L V Y FGSGS LG GE++ + ++PR V V+ ++ G H A+ G VYTWG LG +GD++D L E S ++G L+ +V T + D G F W F G LG+ SD R +R + Q++TG H + +T G+++ +G+ ++ QLG L Sbjct: 48 PKPVRVPGSAKRINKIPELPTERLNV------YVFGSGSMNELGMGEEEMDVVYRPRLNPILSTDKVGVVDLAVGGMHSAALSHDGRVYTWGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTKVICSDNLTAAITDNGCC--FTWGTFRCSDGVLGY-----SDSQKRTAEPTQMRLPEICQLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLE 264
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy Swiss-Prot
Match: RPGR_MOUSE (X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 1.023e-21 Identity = 86/313 (27.48%), Postives = 147/313 (46.96%), Query Frame = -3 Query: 391 NFPS---LANVIQV--SASQNHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHGDTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEI--DKTLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLG 1308 N PS N I + S H A V + +++ G N+ G + I +P ++A+K K A G N T+ T G VY G N GQLG GDT DR T + ++ Q++AG + +T++G ++ +G S +G ++ N P + G + +S G H V G +YT+G+ G+LG +E+ + P+ ++ + ++ +QV T VL + VY FG FG LG + P++++ +++ ++ +S G HT ++T G ++ FGD +LG Sbjct: 25 NIPSKFWFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLG-LGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTV----GKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRVLGIPERV-IQVACGGGHTVVLTE-KVVYAFGLGQFGQLGL--GTFLFETSEPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLG 328 HSP 2 Score: 61.2326 bits (147), Expect = 2.332e-8 Identity = 51/196 (26.02%), Postives = 82/196 (41.84%), Query Frame = -3 Query: 346 VTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQ-LAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGHDTLRGCLEPTEIFI 930 V D G V++FG + +F F K + +S GDEH V + +Y +G G+LG G + P + +LK + + + C R T V D G VY G G LG D D+ +++ + Q+S G + +T G++F +GDN Q+G + P E+ + Sbjct: 8 VPDTGAVFTFG------------KTKFAENIPSKFWFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLGLGSKAAIIKPTCIKALKPEKVKLAACGRNH-TLVSTDTGGVYAAGGNNEGQLGLGD--TDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTV 188 HSP 3 Score: 60.077 bits (144), Expect = 5.312e-8 Identity = 76/266 (28.57%), Postives = 117/266 (43.98%), Query Frame = -3 Query: 802 GRYHTLLIRNSS-VYSCGSSLCGVLGHGPETTQCVAFTRINFPSLANVI-QVSASQNHAAFVLQSGEVFTCGDNS----------SFCCGHRDT-GRPI-------------------------------------FRPRLVEAMKGIPCK--QVAAGLNFTVFLTRQGLVYTCGTNTHGQLGHG----DTQDRPTPKTVELLERVGSVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQ--NEFQPRAIQTFKRKGVHVL 1425 GR HTL+ ++ VY+ G + G LG G +T F +I F + A+ I Q+SA N +A + + G++F GDNS + C H T G+PI R + + GIP + QVA G TV LT + +VY G GQLG G +T + PK +E + + + I+ G ++ +T+ G++Y+FG G + LG G + N+F P F R V ++ Sbjct: 95 GRNHTLVSTDTGGVYAAGGNNEGQLGLG-DTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRVLGIPERVIQVACGGGHTVVLTEK-VVYAFGLGQFGQLGLGTFLFETSE---PKIIERI-KDQKICHISCGENHTALMTELGLLYTFGDGRHGKLGLGMENFTNQFFPTLCSNFLRFAVQLI 354
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy Swiss-Prot
Match: IBTK_XENLA (Inhibitor of Bruton tyrosine kinase OS=Xenopus laevis GN=ibtk PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 5.466e-21 Identity = 75/234 (32.05%), Postives = 110/234 (47.01%), Query Frame = -3 Query: 268 PSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQPRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGHGDEIDKTLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGSLGFPDRGVSDKIMRPRLLDCLRNHRVSQVSTGLYHTVVVTHRGRMFGFGDNERAQLGH------DTLRGCLEPTEI-FIHEMEDEATLLSESR*NAMNCVCFYGD 948 P V +D +Y++G NF LGHG QQ++ P ++ F R GV++ ++ H V + G VYT G G G LGHGDE+ +P + L+G QV K T VL + G VY FG F LG + + R ++ V V+ G +HTV+ T + ++ G N QLG+ + C P ++ +H + TL+S S A CV GD Sbjct: 133 PHIVFKTSDPTELYTWGDNVNFTLGHGTQQSKHHPELVEMFPRSGVYIKQMVLCKFHSVFLSQKGQVYTCGHGQGGRLGHGDELTCLVPRLVEGLRGHPCTQVAGAKDHTVVLTEDGYVYTFGLNTFHQLGIQPPPPNSNVPRQIQAKTMKGKTVLGVAAGRFHTVLWT-KDAVYTVGLN-GGQLGYLQDPNGEKFVSC--PRQVSALHHKDINITLVSASD-GATVCVSERGD 361 HSP 2 Score: 91.2781 bits (225), Expect = 1.146e-17 Identity = 89/297 (29.97%), Postives = 129/297 (43.43%), Query Frame = -3 Query: 562 SSVYSCGSSLCGVLGHGPETTQCVAFTRINFP-SLANVIQVSASQNHAAFVLQSGEVFTCGDNSSFCCGHRDTGRPIFRPRLVEAMKGIPCKQVAAGLNFTVFLTRQGLVYTCGTNTHGQLG-HGDTQDRPTPKTVELLERVG-SVVQIAAGPSYVLTVTDNGVVYSFGSGSNFCLGHGEQQNEFQ----PRAIQTFKRKGVHVLRVSAGDEHVVAVDSSGYVYTWGKGYCGELGH------------GDEIDKTLPEHLISLKGQLAVQVCARKRKTFVLVDGGAVYGFGWMGFGS 1395 + +Y+ G ++ LGHG + ++ FP S + Q+ + H+ F+ Q G+V+TCG GH D + PRLVE ++G PC QVA + TV LT G VYT G NT QLG + P+ ++ G +V+ +AAG + + T + VY+ G LG+ + N + PR + K +++ VSA D V V G +Y + C +L G K PEHL GQ A F L G V F W GS Sbjct: 143 TELYTWGDNVNFTLGHGTQQSKHHPELVEMFPRSGVYIKQMVLCKFHSVFLSQKGQVYTCGHGQGGRLGHGDELTCLV-PRLVEGLRGHPCTQVAGAKDHTVVLTEDGYVYTFGLNTFHQLGIQPPPPNSNVPRQIQAKTMKGKTVLGVAAGRFHTVLWTKDA-VYTVGLNGG-QLGYLQDPNGEKFVSCPRQVSALHHKDINITLVSASDGATVCVSERGDIYLLSEYQCKKLASKQLNLKKVLVSGGILEHKAAPEHLKENGGQPA--------SVFALDQAGRV--FCWKSPGS 426 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0015403 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015403 ID=g.arboreum_cottongen_reftransV1_0015403; Name=g.arboreum_cottongen_reftransV1_0015403; organism=Gossypium arboreum; type=contig; length=1865bpback to top |