g.arboreum_cottongen_reftransV1_0013122, g.arboreum_cottongen_reftransV1_0013122 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: F4ZKM1_ACTCH (AP3 OS=Actinidia chinensis PE=2 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 1.904e-93 Identity = 150/229 (65.50%), Postives = 182/229 (79.48%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLD--GQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPL---VLHDGTNDLRLA 996 MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIM S+TGK HE++SPNISTK +D YQKT GIDLW++HYERM+E+ R+LKE+N +LRREIRQ+MG +L++L++ EL+ LE KM +SL IR+RKYHVIKTQT+ ++KKVRNLEERH NL++D EAK D Q +VE G Y+S + NG SNLYA RL Q P L G++DLRLA Sbjct: 1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTGKLHEYISPNISTKKIYDQYQKTLGIDLWSTHYERMQEHLRKLKEVNNRLRREIRQKMGEELNDLSVHELRGLEQKMSASLTIIRDRKYHVIKTQTETYRKKVRNLEERHGNLLLDFEAKCDLAPQYELVENEGDYDSAVA-FANGVSNLYAFRL-QPNHPNLHHHGGGCGSHDLRLA 227
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: V4RVJ9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026433mg PE=4 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 4.275e-93 Identity = 147/230 (63.91%), Postives = 177/230 (76.96%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQD-GIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGT-----NDLRLA 996 MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIM S+TGKFHE++SP +TK FD YQK+ G+DLW++HY +M+E+YR+LKEIN KLR++IRQRMG DL +L +EL+ LE M SS +RERK+HVIKTQTD +KKKVRNLEERH N+++D E K D G+V+ G Y+S M L NGASNLYA R+ Q LH GT +DL LA Sbjct: 1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMVSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGD-YQSAMA-LANGASNLYAFRMQQQN-----LHQGTGGYGSSDLTLA 223
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: Q9LLA1_PETHY (MADS box transcription factor TM6 OS=Petunia hybrida GN=TM6 PE=2 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 1.613e-89 Identity = 146/227 (64.32%), Postives = 171/227 (75.33%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKL-DGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD--GTNDLRLA 996 MGRGKIEIKKIEN+TNRQVTYSKRRNGLFKKA+ELTVLCDAK+ LIM SST KFHE+ SPN +TK DLYQ+T G+D+WN HYE+M+EN RLK+IN KLRREIRQR G D+S LN++EL L+ + SL IRERKYHVIKTQTD +K+VRNLEE+H +L+ DLEAK D G+VE G++ S M NG NLYA RL Q P L G+ DLRLA Sbjct: 1 MGRGKIEIKKIENSTNRQVTYSKRRNGLFKKAKELTVLCDAKICLIMLSSTRKFHEYTSPNTTTKKMIDLYQRTLGVDIWNKHYEKMQENLNRLKDINNKLRREIRQRTGEDMSGLNLQELCHLQGNVSDSLAEIRERKYHVIKTQTDTCRKRVRNLEEQHGSLVHDLEAKSEDPTYGVVENEGHFNSAMA-FANGVHNLYAFRL-QTLHPNLQNGGGFGSRDLRLA 225
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2QE54_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 2.815e-89 Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = -1 Query: 580 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERK 996 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRERK Sbjct: 1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERK 139
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: Q40513_TOBAC (MADS-box protein OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 3.333e-88 Identity = 135/217 (62.21%), Postives = 167/217 (76.96%), Query Frame = -1 Query: 346 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG 996 M RGKI+IK+IEN TNRQVTYSKRRNGLFKKA ELTVLCDAKVS+IM SSTGK HEF+SP+++TK FDLYQKT G+DLWNSHYE+M+E R+LK++N+ LRREIRQRMG L++LN ++L+ L +D+SL IRERKY VI Q D +KKKVRN+EE H NL+++ +A+ + G+VE G Y S +G PNG + ALRL N QP LH G Sbjct: 1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSVTTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKDVNRNLRREIRQRMGESLNDLNYEQLEELNENVDNSLKLIRERKYKVIGNQIDTYKKKVRNVEEIHRNLLLEFDARQEDPYGLVEQEGDYNSVLG-FPNGGPRILALRLQPNHQPNHHLHSG 216
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.280e-31 Identity = 78/203 (38.42%), Postives = 112/203 (55.17%), Query Frame = -1 Query: 442 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNIS------TKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLD------------GQDGIVETGGYY 996 MGRG++E+K+IEN NRQVT+SKRRNGL KKA EL+VLCDA+V+LI+FSS GK +EF S I+ ++ + S Y M +LK + L+R R +G DL L++KELQ LE +++ +L R+RK ++ Q ++ ++K R L E + L LE + Q +VE G Y Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQSWYHEMS----KLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAY 199
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 2.941e-31 Identity = 85/242 (35.12%), Postives = 133/242 (54.96%), Query Frame = -1 Query: 319 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLY----------QKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDK-HKKKV----RNLE-ERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA*C 996 MGRGKI I++I+N+T+RQVT+SKRRNGL KKA+EL++LCDA+V L++FSSTG+ +EF S N+ T D Y T+ I +W + + L+E +K+L MG +LS L +++LQ LE +++ SL IR RK +++K++ ++ H K N+E R N++ + +L + E G ++ +S Y+ R+ QN P L + R C Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKT--VIDRYTNAKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQL-------MGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSLNVMSQQKLELYNKLQACEQRGATDAN-----ESSSTPYSFRIIQNANMPPSLELSQSQQREGEC 228
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.449e-31 Identity = 70/165 (42.42%), Postives = 103/165 (62.42%), Query Frame = -1 Query: 535 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKT-----------TGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKV 996 MGRGKIEIK+I+NAT+RQVT+SKRR+GLFKKA+EL++LCDA+V L++FSST + ++F S S K + Y +T + LW + + L+E + RQ +G LS L++++LQ LE+K++ SL IR RK +V+ Q + +KV Sbjct: 1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS--SMKSIIERYNETKEDPHQTMNASSEAKLWQQEAASLRQQLHNLQEYH-------RQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKV 156
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.206e-30 Identity = 73/151 (48.34%), Postives = 101/151 (66.89%), Query Frame = -1 Query: 559 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTT--GIDLWNSHYERMEENYR---RLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQ 996 MGRG++E+K+IEN NRQVT++KRRNGL KKA EL+VLCDA+VSLI+FS+ GK +EF S + K + YQK + I++ N + +E +YR +LK + L+R+ R +G DL LN KEL+ LE ++D SL +R IKTQ Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLK-TLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVR-----CIKTQ 145
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3) HSP 1 Score: 120.168 bits (300), Expect = 3.003e-30 Identity = 82/222 (36.94%), Postives = 123/222 (55.41%), Query Frame = -1 Query: 361 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDL------YQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL---IMDLEAKLDGQDGIVETG-GYYESTMGLLPNGASNLYALRLYQNQQPPL 996 MGRGKIEIK+IEN+TNRQVT+SKRR G+ KKA+E+ VLCDA+V +++FSS GK ++ +P +T F L YQ +G LW+ ++ + R+K+ N ++ E+R G DL+ L KEL A+E +++ +R++ + HK+ + LE+ H L + E +L G GI E GY+ AS + R+ Q P L Sbjct: 1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPK-TTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFRVHQQEVELSG--GIRELELGYHHDDRDF---AASMPFTFRV-QPSHPNL 211 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013122 ID=g.arboreum_cottongen_reftransV1_0013122; Name=g.arboreum_cottongen_reftransV1_0013122; organism=Gossypium arboreum; type=contig; length=1122bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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