g.arboreum_cottongen_reftransV1_0013122, g.arboreum_cottongen_reftransV1_0013122 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013122
Unique Nameg.arboreum_cottongen_reftransV1_0013122
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1122
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeg.arboreum_cottongen_reftransV1_0013122:1..1122 .
Chr1:135306793..135310141 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: F4ZKM1_ACTCH (AP3 OS=Actinidia chinensis PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 1.904e-93
Identity = 150/229 (65.50%), Postives = 182/229 (79.48%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLD--GQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPL---VLHDGTNDLRLA 996
            MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIM S+TGK HE++SPNISTK  +D YQKT GIDLW++HYERM+E+ R+LKE+N +LRREIRQ+MG +L++L++ EL+ LE KM +SL  IR+RKYHVIKTQT+ ++KKVRNLEERH NL++D EAK D   Q  +VE  G Y+S +    NG SNLYA RL Q   P L       G++DLRLA
Sbjct:    1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTGKLHEYISPNISTKKIYDQYQKTLGIDLWSTHYERMQEHLRKLKEVNNRLRREIRQKMGEELNDLSVHELRGLEQKMSASLTIIRDRKYHVIKTQTETYRKKVRNLEERHGNLLLDFEAKCDLAPQYELVENEGDYDSAVA-FANGVSNLYAFRL-QPNHPNLHHHGGGCGSHDLRLA 227          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: V4RVJ9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026433mg PE=4 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 4.275e-93
Identity = 147/230 (63.91%), Postives = 177/230 (76.96%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQD-GIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGT-----NDLRLA 996
            MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIM S+TGKFHE++SP  +TK  FD YQK+ G+DLW++HY +M+E+YR+LKEIN KLR++IRQRMG DL +L  +EL+ LE  M SS   +RERK+HVIKTQTD +KKKVRNLEERH N+++D E K D    G+V+ G  Y+S M  L NGASNLYA R+ Q       LH GT     +DL LA
Sbjct:    1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMVSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGD-YQSAMA-LANGASNLYAFRMQQQN-----LHQGTGGYGSSDLTLA 223          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: Q9LLA1_PETHY (MADS box transcription factor TM6 OS=Petunia hybrida GN=TM6 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 1.613e-89
Identity = 146/227 (64.32%), Postives = 171/227 (75.33%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKL-DGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD--GTNDLRLA 996
            MGRGKIEIKKIEN+TNRQVTYSKRRNGLFKKA+ELTVLCDAK+ LIM SST KFHE+ SPN +TK   DLYQ+T G+D+WN HYE+M+EN  RLK+IN KLRREIRQR G D+S LN++EL  L+  +  SL  IRERKYHVIKTQTD  +K+VRNLEE+H +L+ DLEAK  D   G+VE  G++ S M    NG  NLYA RL Q   P L      G+ DLRLA
Sbjct:    1 MGRGKIEIKKIENSTNRQVTYSKRRNGLFKKAKELTVLCDAKICLIMLSSTRKFHEYTSPNTTTKKMIDLYQRTLGVDIWNKHYEKMQENLNRLKDINNKLRREIRQRTGEDMSGLNLQELCHLQGNVSDSLAEIRERKYHVIKTQTDTCRKRVRNLEEQHGSLVHDLEAKSEDPTYGVVENEGHFNSAMA-FANGVHNLYAFRL-QTLHPNLQNGGGFGSRDLRLA 225          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2QE54_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.815e-89
Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = -1
Query:  580 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERK 996
            MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRERK
Sbjct:    1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERK 139          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: Q40513_TOBAC (MADS-box protein OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.333e-88
Identity = 135/217 (62.21%), Postives = 167/217 (76.96%), Query Frame = -1
Query:  346 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG 996
            M RGKI+IK+IEN TNRQVTYSKRRNGLFKKA ELTVLCDAKVS+IM SSTGK HEF+SP+++TK  FDLYQKT G+DLWNSHYE+M+E  R+LK++N+ LRREIRQRMG  L++LN ++L+ L   +D+SL  IRERKY VI  Q D +KKKVRN+EE H NL+++ +A+ +   G+VE  G Y S +G  PNG   + ALRL  N QP   LH G
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSVTTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKDVNRNLRREIRQRMGESLNDLNYEQLEELNENVDNSLKLIRERKYKVIGNQIDTYKKKVRNVEEIHRNLLLEFDARQEDPYGLVEQEGDYNSVLG-FPNGGPRILALRLQPNHQPNHHLHSG 216          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.141e-37
Identity = 75/170 (44.12%), Postives = 109/170 (64.12%), Query Frame = -1
Query:  505 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINK------KLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL 996
            MGRGKIEIK+IEN+TNRQVT+SKRR GL KKA EL VLCDA+V +++FSSTGK  E+ SP  S +   + YQ  T     NSH+E +  + + L E+ +      KL   IR+  G DLS L + ++  LE +++ S+  +R RK+ ++  Q D  ++K + LE+++  L
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHAT-----NSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFL 165          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 9.795e-37
Identity = 73/164 (44.51%), Postives = 111/164 (67.68%), Query Frame = -1
Query:  505 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL 996
            MGRGKIEIK+IEN++NRQVTYSKRRNG+ KKA+E++VLCDA+VS+I+F+S+GK HEF S   S     D Y K TG  L ++ +E ++    ++K+ N  ++ E+R   G D++ LN +EL  LE  +++ L +IR ++  V++      +KK +++EE    L
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST--SLVDILDQYHKLTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLRMM----RKKTQSMEEEQDQL 158          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.947e-36
Identity = 74/171 (43.27%), Postives = 108/171 (63.16%), Query Frame = -1
Query:  502 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINK------KLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLI 996
            MGRGKIEIK+IENATNRQVT+SKRR GL KKA EL VLCDA+V +++FSSTGK  E+ SP  S +   + YQ  T     N+H+E +  + +   E+ +      KL   IR+  G DLS L + ++  LE +++ S+  +R RK+ ++  Q D  ++K   LE++++ L 
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVT-----NTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLC 166          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.997e-34
Identity = 70/194 (36.08%), Postives = 116/194 (59.79%), Query Frame = -1
Query:  415 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPN 996
            MGRGKIEIK+IEN+TNRQVT+SKRR+G+ KKA+E++VLCDA+V +++FSS GK +++ SP  S     + YQ  +G  LW+  ++ +     R+K+ N  ++ E+R   G DL+ L  KEL  +E  +D+ ++ + ++    +    ++H +  + LE+ +  L   L      Q  I  +G   +  +G  P+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDK----LMDHWERHVRTDKMLEDENKLLAFKLH-----QQDIALSGSMRDLELGYHPD 185          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.900e-33
Identity = 75/175 (42.86%), Postives = 111/175 (63.43%), Query Frame = -1
Query:  484 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENY----RRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAK 996
            MGRG++E+K+IEN  NRQVT+SKRRNGL KKA EL+VLCDA+V+LI+FSS GK +EF S  I +    + Y +     L N+  E   +++     +LK   + L R  R  +G DL E+ +KELQALE +++++L A R+RK  V+  + +  +KK R L + +  L +  E +
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIEST--IERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETE 173          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.927e-33
Identity = 84/198 (42.42%), Postives = 116/198 (58.59%), Query Frame = -1
Query:  448 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNI--STKGFFDLYQKTTGID--LWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDG-------QD----GIVETGG 996
            MGRG++E+K+IEN  NRQVT+SKRRNGL KKA EL+VLCDA+V+LI+FSS GK +EF S  I  + + +        G +  L    ++   +   RLK   + L+R  R  +G DL  L+IKELQ LE +++ SL   R+RK  ++  Q D  ++K R L E +  L   LEA+ D        QD    G V +GG
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVVSGG 198          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.562e-32
Identity = 72/166 (43.37%), Postives = 99/166 (59.64%), Query Frame = -1
Query:  505 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSH--YERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL 996
            MGRGKIEIKKIEN T RQVT+SKRR GL KK +EL++LCDA + LI+FS+TGK  EF S         D Y  T G+ L + H   E++      L+     L   +R   G DL+ +   EL  LE +++ S+L +RERK  +++ Q +   +K R LEE + N+
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNM 166          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.291e-32
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = -1
Query:  580 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYR------RLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERK 996
            MGRG++E+KKIEN TNRQVT+SKRR GL KKA EL +LCDA++ +I+FS TGK +E+ SP       FD Y K       ++ +E M+   R      R+K+ N +LR  +RQ MG DL+ L ++++  LE +++ SL  +R RK
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAP-----STRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRK 140          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 4.323e-32
Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = -1
Query:  568 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKT----TGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVI 996
            MGRGKI I++I+N+T+RQVT+SKRRNG+FKKA+EL +LCDA+V L++FSSTG+ +E+ S   S K   D Y K+      +   NS  +  +     L++    L+   RQ MG DLS LN+KELQ+LE +++ SL ++R +K HV+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSS--TSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVL 145          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.244e-31
Identity = 77/174 (44.25%), Postives = 110/174 (63.22%), Query Frame = -1
Query:  490 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTT--GIDLWNSHYERMEENYR---RLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLE 996
            MGRG++E+K+IEN  NRQVT++KRRNGL KKA EL+VLCDA+V+LI+FS+ GK +EF S +   K   D YQK +   I++ N   + +E +YR   +LK   + L+R+ R  +G DL  LN KEL+ LE ++D SL  +R  K   +  Q    + K + L E +  L M L+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKT-LDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLD 173          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
F4ZKM1_ACTCH1.904e-9365.50AP3 OS=Actinidia chinensis PE=2 SV=1[more]
V4RVJ9_9ROSI4.275e-9363.91Uncharacterized protein OS=Citrus clementina GN=CI... [more]
Q9LLA1_PETHY1.613e-8964.32MADS box transcription factor TM6 OS=Petunia hybri... [more]
A0A0D2QE54_GOSRA2.815e-8997.12Uncharacterized protein OS=Gossypium raimondii GN=... [more]
Q40513_TOBAC3.333e-8862.21MADS-box protein OS=Nicotiana tabacum PE=2 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
M17_MAIZE8.141e-3744.12MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
FBP1_PETHY9.795e-3744.51Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MAD29_ORYSJ2.947e-3643.27MADS-box transcription factor 29 OS=Oryza sativa s... [more]
MADS2_ORYSJ7.997e-3436.08MADS-box transcription factor 2 OS=Oryza sativa su... [more]
AGL6_ARATH1.900e-3342.86Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MAD17_ORYSJ1.927e-3342.42MADS-box transcription factor 17 OS=Oryza sativa s... [more]
TT16_ARATH1.562e-3243.37Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MAD31_ORYSJ2.291e-3245.52MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MAD27_ORYSJ4.323e-3246.94MADS-box transcription factor 27 OS=Oryza sativa s... [more]
SEP1_ARATH1.244e-3144.25Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..167
NoneNo IPR availableCOILSCoilCoilcoord: 77..107
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..208
NoneNo IPR availablePANTHERPTHR11945:SF219FLORAL HOMEOTIC PROTEIN APETALA 3coord: 2..208
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 67.42
coord: 38..59
score: 55.24
coord: 23..38
score: 75.63
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 2.1E-41
score: 153.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 9.3E-25
score: 85.7
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 32.674
IPR002100Transcription factor, MADS-boxSUPERFAMILY55455SRF-likecoord: 2..95
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 82..165
e-value: 2.3E-20
score: 72.4
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 84..178
score: 14.807

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013122 ID=g.arboreum_cottongen_reftransV1_0013122; Name=g.arboreum_cottongen_reftransV1_0013122; organism=Gossypium arboreum; type=contig; length=1122bp
CTCGCGAAAGAATTAACATCCCCGAACAAAGATAAATTGTAAGTAATTTA
GTATTACATCAATAACGCAACAACACTTTCACTTGTCTTAGGAAAAGAAA
AGTCATTAGGGCAATAAGGTACACCGAAAATCTCGCTACTTTCAGGCGCC
CATTAATTCACCATGCAACTTTCTAACTCATACATACATACATACATATA
TTGACATGAGTTAGCAGTATAGTAATGAAGAGATAGAGAATGTATGAGTT
AGCAGTATAGTAAAGAAGAGATAGAGATTAAATACAGTCTGCAATGGAGG
GGACATCCACAGAGACCAGCATCAAGCAAGGCGAAGATCATTGGTTCCAT
CGTGAAGAACAAGTGGAGGCTGTTGGTTTTGGTAAAGGCGAAGGGCATAT
AAATTAGAAGCTCCATTTGGTAGTAGTCCCATTGTTGATTCATAATATCC
TCCGGTTTCAACTATTCCATCTTGACCATCAAGCTTTGCCTCCAAGTCCA
TGATAAGATTTGCATGTCTTTCCTCCAAATTCCTTACCTTCTTCTTGTGT
TTGTCTGTTTGAGTTTTGATGACATGGTACTTTCTCTCACGTATAGCTAG
CAAAGAAGAATCCATTTTAGCTTCAAGAGCTTGCAGTTCCTTAATGTTAA
GTTCACTCAAGTCTCCACCCATTCTCTGCCTAATCTCCCTTCTCAGCTTC
TTGTTTATCTCCTTCAACCTCCTGTAATTTTCTTCCATTCTCTCATAATG
GGAGTTCCATAGATCAATCCCTGTGGTCTTTTGGTATAGATCAAAAAACC
CTTTTGTCGAGATGTTGGGGCTAAGGAACTCATGAAATTTGCCAGTGCTG
GAGAACATGATCAATGAAACCTTGGCGTCACAAAGAACAGTGAGCTCTTG
GGCTTTCTTGAATAAACCGTTCCTTCGTTTTGAATAAGTGACTTGCCTGT
TTGTAGCGTTCTCAATCTTCTTGATCTCGATCTTCCCACGACCCATTGTT
GGTTTCTTTCAAGTGAATGATCAAATGAGAAAGAGGGTAGCAGCTAGGCT
TAAAGGGGTTTGCAGCAAAATAAGGTTAAATGAGAAAAATGGTGATGAAA
AGGGAATTGAATCCCATATCGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR002487TF_Kbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription