g.arboreum_cottongen_reftransV1_0013122, g.arboreum_cottongen_reftransV1_0013122 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013122
Unique Nameg.arboreum_cottongen_reftransV1_0013122
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0013122:1..1122 .
Chr1:135306793..135310141 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: F4ZKM1_ACTCH (AP3 OS=Actinidia chinensis PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 1.904e-93
Identity = 150/229 (65.50%), Postives = 182/229 (79.48%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLD--GQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPL---VLHDGTNDLRLA 996
            MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIM S+TGK HE++SPNISTK  +D YQKT GIDLW++HYERM+E+ R+LKE+N +LRREIRQ+MG +L++L++ EL+ LE KM +SL  IR+RKYHVIKTQT+ ++KKVRNLEERH NL++D EAK D   Q  +VE  G Y+S +    NG SNLYA RL Q   P L       G++DLRLA
Sbjct:    1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTGKLHEYISPNISTKKIYDQYQKTLGIDLWSTHYERMQEHLRKLKEVNNRLRREIRQKMGEELNDLSVHELRGLEQKMSASLTIIRDRKYHVIKTQTETYRKKVRNLEERHGNLLLDFEAKCDLAPQYELVENEGDYDSAVA-FANGVSNLYAFRL-QPNHPNLHHHGGGCGSHDLRLA 227          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: V4RVJ9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026433mg PE=4 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 4.275e-93
Identity = 147/230 (63.91%), Postives = 177/230 (76.96%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQD-GIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGT-----NDLRLA 996
            MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIM S+TGKFHE++SP  +TK  FD YQK+ G+DLW++HY +M+E+YR+LKEIN KLR++IRQRMG DL +L  +EL+ LE  M SS   +RERK+HVIKTQTD +KKKVRNLEERH N+++D E K D    G+V+ G  Y+S M  L NGASNLYA R+ Q       LH GT     +DL LA
Sbjct:    1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMVSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGD-YQSAMA-LANGASNLYAFRMQQQN-----LHQGTGGYGSSDLTLA 223          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: Q9LLA1_PETHY (MADS box transcription factor TM6 OS=Petunia hybrida GN=TM6 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 1.613e-89
Identity = 146/227 (64.32%), Postives = 171/227 (75.33%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKL-DGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD--GTNDLRLA 996
            MGRGKIEIKKIEN+TNRQVTYSKRRNGLFKKA+ELTVLCDAK+ LIM SST KFHE+ SPN +TK   DLYQ+T G+D+WN HYE+M+EN  RLK+IN KLRREIRQR G D+S LN++EL  L+  +  SL  IRERKYHVIKTQTD  +K+VRNLEE+H +L+ DLEAK  D   G+VE  G++ S M    NG  NLYA RL Q   P L      G+ DLRLA
Sbjct:    1 MGRGKIEIKKIENSTNRQVTYSKRRNGLFKKAKELTVLCDAKICLIMLSSTRKFHEYTSPNTTTKKMIDLYQRTLGVDIWNKHYEKMQENLNRLKDINNKLRREIRQRTGEDMSGLNLQELCHLQGNVSDSLAEIRERKYHVIKTQTDTCRKRVRNLEEQHGSLVHDLEAKSEDPTYGVVENEGHFNSAMA-FANGVHNLYAFRL-QTLHPNLQNGGGFGSRDLRLA 225          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2QE54_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.815e-89
Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = -1
Query:  580 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERK 996
            MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRERK
Sbjct:    1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERK 139          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: Q40513_TOBAC (MADS-box protein OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.333e-88
Identity = 135/217 (62.21%), Postives = 167/217 (76.96%), Query Frame = -1
Query:  346 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG 996
            M RGKI+IK+IEN TNRQVTYSKRRNGLFKKA ELTVLCDAKVS+IM SSTGK HEF+SP+++TK  FDLYQKT G+DLWNSHYE+M+E  R+LK++N+ LRREIRQRMG  L++LN ++L+ L   +D+SL  IRERKY VI  Q D +KKKVRN+EE H NL+++ +A+ +   G+VE  G Y S +G  PNG   + ALRL  N QP   LH G
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSVTTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKDVNRNLRREIRQRMGESLNDLNYEQLEELNENVDNSLKLIRERKYKVIGNQIDTYKKKVRNVEEIHRNLLLEFDARQEDPYGLVEQEGDYNSVLG-FPNGGPRILALRLQPNHQPNHHLHSG 216          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.554e-85
Identity = 129/204 (63.24%), Postives = 160/204 (78.43%), Query Frame = -1
Query:  385 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRL 996
            M RGKI+IK+IEN TNRQVTYSKRRNGLFKKA ELTVLCDAKVS+IM SSTGK HEF+SP+I+TK  FDLYQKT G+DLWNSHYE+M+E  R+LKE+N+ LR+EIRQRMG  L++LN ++L+ L   +D+SL  IRERKY VI  Q +  KKKVRN+EE H NL+++ +A+ +   G+VE  G Y S +G  PNG   + ALRL
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEFDARQEDPYGLVEQEGDYNSVLG-FPNGGHRILALRL 203          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 9.414e-80
Identity = 126/218 (57.80%), Postives = 158/218 (72.48%), Query Frame = -1
Query:  346 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKL-DGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG 996
            M RGKI+IK+IEN TNRQVTYSKRRNGLFKKA EL+VLCDAKVS+IM SST K HE++SP  +TK  FD YQK  G+DLW+SHYE+M+E+ ++L E+N+ LRREIRQRMG  L++L  +++  L   MD+SL  IRERKY VI  Q D  KKKVRN+EE H NL+++ +A+  D   G+V+  G Y S +G  PNG   + ALRL  N  P   LH G
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLVDNEGDYNSVLG-FPNGGPRIIALRLPTNHHP--TLHSG 215          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.044e-70
Identity = 114/208 (54.81%), Postives = 149/208 (71.63%), Query Frame = -1
Query:  391 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIV--ETGGYYESTMGLLPNG----ASNLYAL 996
            MGRGK+EI+KIEN TNRQVT+SKRRNG+ KKAQELTVLCDAKVSL+M SST K H +LSP +S K  +D YQK  G+DLW   +ERM+E +R++ E+N  LRREI +RMGGDL  L + EL AL+ +M+ +++ IR +KYH IK QT   +KK++NLEERH +L+M+LEAK  G    +  +    YE+       G    A+NL+AL
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDLVMELEAKFRGPQFAIGEDDPRNYEAAAAAAVYGNDVAAANLFAL 208          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 6.045e-67
Identity = 110/210 (52.38%), Postives = 150/210 (71.43%), Query Frame = -1
Query:  370 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKL-DGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQ 996
            M RGKI+IK+IEN TNRQVTYSKRRNGLFKKA ELTVLCDA+VS+IMFSS+ K HE++SPN +TK   DLYQ  + +D+W + YERM+E  R+L E N+ LR +I+QR+G  L EL+I+EL+ LE +M+++   +RERK+  +  Q +  KKK ++ ++   NLI +LE +  D   G+V+ GG Y+S +G    G S  YALR +QN  
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDPHYGLVDNGGDYDSVLGYQIEG-SRAYALRFHQNHH 209          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 7.041e-64
Identity = 115/226 (50.88%), Postives = 150/226 (66.37%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPL--VLHDGTNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRR G+ KKA+ELTVLCDA+V++IMFSSTGK+HEF SP+   KG FD YQ+  G  LW   YE M+     LK+IN+ LR EIRQRMG DL  L   EL+ LE  +D++L  +R RKYHVI TQT+ +KKKV++  E +  L  +L  + +   G V+         G     A++++A R+  + QP L  + + G +DLRL 
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETLQQELGLREEPAFGFVDN-TGGGWDGGAGAGAAADMFAFRVVPS-QPNLHGMAYGGNHDLRLG 224          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.833e-41
Identity = 78/171 (45.61%), Postives = 113/171 (66.08%), Query Frame = -1
Query:  484 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAK 996
            MGRGKIEIK+IEN++NRQVTYSKRRNG+ KKA+E+TVLCDAKVSLI+F ++GK HE+ SP+ +     D YQKT+G  LW++ +E +     R+K+ N  ++ ++R   G D++ LN KEL  LE  + + L +I  ++  +++      +K  + LEE H  L   L  K
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEILRMV----RKNDQILEEEHKQLQYALHQK 167          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.226e-40
Identity = 86/216 (39.81%), Postives = 131/216 (60.65%), Query Frame = -1
Query:  361 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDL-EAKLDG-QDGIVETGGYYE--STMGLLPNGASNLYALRLYQNQQPPL 996
            MGRGKIEIK+IEN++NRQVTYSKRRNG+ KKA+E++VLCDA VS+I+F+S+GK HEF SP+ +     D Y K +G  LW+  +E ++    R+K+ N  ++ E+R   G D++ LN KEL  LE  +++   A++ ++   ++    KH + V   EE + +L   L +  LD   D ++E+   Y+      +    A   +A R+ Q  QP L
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEFVRMMR-KHNEMV---EEENQSLQFKLRQMHLDPMNDNVMESQAVYDHHHHQNIADYEAQMPFAFRV-QPMQPNL 211          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.063e-38
Identity = 74/164 (45.12%), Postives = 112/164 (68.29%), Query Frame = -1
Query:  505 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL 996
            MGRGKIEIK+IEN++NRQVTYSKRRNG+ KKA+E++VLCDA+VS+I+F+S+GK HEF S   S     D Y K TG  LW++ +E ++    ++K+ N  ++ E+R   G D++ LN +EL  LE  +D+ L +IR ++  +++      +KK +++EE    L
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST--SLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLLRMM----RKKTQSMEEEQDQL 158          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.216e-38
Identity = 67/143 (46.85%), Postives = 97/143 (67.83%), Query Frame = -1
Query:  568 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVI 996
            MGRGKIEIK+IENA NR VT+SKRRNGL KKA+E+TVLCDAKV+LI+F+S GK  ++  P++      D YQK +G  LW++ +E +     R+K+ N  L+ E+R   G D+  LN+K L A+E  ++  L  +R+ +  ++
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEIL 143          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.719e-37
Identity = 79/188 (42.02%), Postives = 123/188 (65.43%), Query Frame = -1
Query:  445 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHAN---LIMDLEAKLDG-QDGIVETGGY 996
            MGRGKIEIK+IEN TNRQVT+SKRR GL KKA EL+VLCDA++ LI+FSS+GK  E+ S + S K   + YQK +G  +     + +     R+K  N+KL+  IR+ MG DL+ L + EL  L  +++S+   +R RK  ++  Q +  ++K R LE+++++   L+ + +A ++G Q+ ++E G +
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQEPLLEFGVF 188          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
F4ZKM1_ACTCH1.904e-9365.50AP3 OS=Actinidia chinensis PE=2 SV=1[more]
V4RVJ9_9ROSI4.275e-9363.91Uncharacterized protein OS=Citrus clementina GN=CI... [more]
Q9LLA1_PETHY1.613e-8964.32MADS box transcription factor TM6 OS=Petunia hybri... [more]
A0A0D2QE54_GOSRA2.815e-8997.12Uncharacterized protein OS=Gossypium raimondii GN=... [more]
Q40513_TOBAC3.333e-8862.21MADS-box protein OS=Nicotiana tabacum PE=2 SV=1[more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
MADS1_PETHY3.554e-8563.24Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
DEFA_ANTMA9.414e-8057.80Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
CMB2_DIACA1.044e-7054.81MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AP3_ARATH6.045e-6752.38Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MAD16_ORYSJ7.041e-6450.88MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MADS2_PETHY7.833e-4145.61Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
GLOB_ANTMA2.226e-4039.81Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
GLOB_TOBAC1.063e-3845.12Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
PIST_ARATH9.216e-3846.85Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
GGM13_GNEGN2.719e-3742.02MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..167
NoneNo IPR availableCOILSCoilCoilcoord: 77..107
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..208
NoneNo IPR availablePANTHERPTHR11945:SF219FLORAL HOMEOTIC PROTEIN APETALA 3coord: 2..208
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 67.42
coord: 38..59
score: 55.24
coord: 23..38
score: 75.63
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 2.1E-41
score: 153.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 9.3E-25
score: 85.7
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 32.674
IPR002100Transcription factor, MADS-boxSUPERFAMILY55455SRF-likecoord: 2..95
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 82..165
e-value: 2.3E-20
score: 72.4
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 84..178
score: 14.807

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013122 ID=g.arboreum_cottongen_reftransV1_0013122; Name=g.arboreum_cottongen_reftransV1_0013122; organism=Gossypium arboreum; type=contig; length=1122bp
CTCGCGAAAGAATTAACATCCCCGAACAAAGATAAATTGTAAGTAATTTA
GTATTACATCAATAACGCAACAACACTTTCACTTGTCTTAGGAAAAGAAA
AGTCATTAGGGCAATAAGGTACACCGAAAATCTCGCTACTTTCAGGCGCC
CATTAATTCACCATGCAACTTTCTAACTCATACATACATACATACATATA
TTGACATGAGTTAGCAGTATAGTAATGAAGAGATAGAGAATGTATGAGTT
AGCAGTATAGTAAAGAAGAGATAGAGATTAAATACAGTCTGCAATGGAGG
GGACATCCACAGAGACCAGCATCAAGCAAGGCGAAGATCATTGGTTCCAT
CGTGAAGAACAAGTGGAGGCTGTTGGTTTTGGTAAAGGCGAAGGGCATAT
AAATTAGAAGCTCCATTTGGTAGTAGTCCCATTGTTGATTCATAATATCC
TCCGGTTTCAACTATTCCATCTTGACCATCAAGCTTTGCCTCCAAGTCCA
TGATAAGATTTGCATGTCTTTCCTCCAAATTCCTTACCTTCTTCTTGTGT
TTGTCTGTTTGAGTTTTGATGACATGGTACTTTCTCTCACGTATAGCTAG
CAAAGAAGAATCCATTTTAGCTTCAAGAGCTTGCAGTTCCTTAATGTTAA
GTTCACTCAAGTCTCCACCCATTCTCTGCCTAATCTCCCTTCTCAGCTTC
TTGTTTATCTCCTTCAACCTCCTGTAATTTTCTTCCATTCTCTCATAATG
GGAGTTCCATAGATCAATCCCTGTGGTCTTTTGGTATAGATCAAAAAACC
CTTTTGTCGAGATGTTGGGGCTAAGGAACTCATGAAATTTGCCAGTGCTG
GAGAACATGATCAATGAAACCTTGGCGTCACAAAGAACAGTGAGCTCTTG
GGCTTTCTTGAATAAACCGTTCCTTCGTTTTGAATAAGTGACTTGCCTGT
TTGTAGCGTTCTCAATCTTCTTGATCTCGATCTTCCCACGACCCATTGTT
GGTTTCTTTCAAGTGAATGATCAAATGAGAAAGAGGGTAGCAGCTAGGCT
TAAAGGGGTTTGCAGCAAAATAAGGTTAAATGAGAAAAATGGTGATGAAA
AGGGAATTGAATCCCATATCGG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR002487TF_Kbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription