g.arboreum_cottongen_reftransV1_0013122, g.arboreum_cottongen_reftransV1_0013122 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013122
Unique Nameg.arboreum_cottongen_reftransV1_0013122
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1122
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeg.arboreum_cottongen_reftransV1_0013122:1..1122 .
Chr1:135306793..135310141 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: U5L2F8_GOSHI (MADS box protein MADS52 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 2.613e-127
Identity = 187/228 (82.02%), Postives = 200/228 (87.72%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG----TNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKK RREIRQRMGGDL +LNIKELQALEAKMDSSL+AIR+RKYHVIKTQTD H+KKVRNLEE HANL+ DLE KLD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVLH G    +NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKSRREIRQRMGGDLDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHRKKVRNLEEGHANLVFDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFDSNDLRLA 224          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: D9IUY4_GOSHI (MADS protein OS=Gossypium hirsutum GN=MADS9 PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 5.173e-126
Identity = 188/234 (80.34%), Postives = 201/234 (85.90%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKK------VRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG----TNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKK RREIRQRMGGDL +LNIKELQALEAKMDSSL+AIR+RKYHVIKTQTD H+KK      VRNLEERHANL+ DLE KLD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVLH G    +NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKSRREIRQRMGGDLDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHRKKDWNALQVRNLEERHANLVFDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFDSNDLRLA 230          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2RAQ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G064900 PE=4 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.598e-125
Identity = 186/228 (81.58%), Postives = 199/228 (87.28%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD----GTNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGDL +LNIKELQALE KMDSSL+AIR+RKYHVIKTQTD H+KKVRNLEERHANL+ DL   LD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVLH     G+NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALETKMDSSLVAIRDRKYHVIKTQTDTHRKKVRNLEERHANLVFDL---LDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFGSNDLRLA 221          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A061DLS5_THECC (Floral homeotic protein DEFICIENS, putative isoform 3 OS=Theobroma cacao GN=TCM_000266 PE=4 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 9.630e-123
Identity = 183/227 (80.62%), Postives = 202/227 (88.99%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD---GTNDLRLA 996
            MGRGKIEIKKIEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSS+GKFHEF+SPNISTK FFDLYQKT GIDLW+SHYE+M+ENYRRLKEIN +LRREIRQR+G DL +LNIKELQALEAKM SSL A+R+RKYHVIKTQTD +KKKVRNLE+RHANL++DLEAKL  +DGIVE   YYES+MG L NGASNLYALRL+QN Q  L+ H    G NDLRLA
Sbjct:    1 MGRGKIEIKKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFISPNISTKTFFDLYQKTLGIDLWSSHYEKMQENYRRLKEINNRLRREIRQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKKKVRNLEQRHANLVLDLEAKL--EDGIVENEAYYESSMG-LANGASNLYALRLHQNHQVNLLHHGGRFGPNDLRLA 224          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2PPX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G064900 PE=4 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.242e-122
Identity = 188/257 (73.15%), Postives = 201/257 (78.21%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKK-----------------------------VRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD----GTNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGDL +LNIKELQALE KMDSSL+AIR+RKYHVIKTQTD H+KK                             VRNLEERHANL+ DLE KLD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVLH     G+NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALETKMDSSLVAIRDRKYHVIKTQTDTHRKKVSESNTIKTVACHSISRVLIIFEDWNALQVRNLEERHANLVFDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFGSNDLRLA 253          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A061DFV0_THECC (Floral homeotic protein DEFICIENS, putative isoform 2 OS=Theobroma cacao GN=TCM_000266 PE=4 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 5.646e-121
Identity = 183/228 (80.26%), Postives = 202/228 (88.60%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREI-RQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD---GTNDLRLA 996
            MGRGKIEIKKIEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSS+GKFHEF+SPNISTK FFDLYQKT GIDLW+SHYE+M+ENYRRLKEIN +LRREI RQR+G DL +LNIKELQALEAKM SSL A+R+RKYHVIKTQTD +KKKVRNLE+RHANL++DLEAKL  +DGIVE   YYES+MG L NGASNLYALRL+QN Q  L+ H    G NDLRLA
Sbjct:    1 MGRGKIEIKKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFISPNISTKTFFDLYQKTLGIDLWSSHYEKMQENYRRLKEINNRLRREISRQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKKKVRNLEQRHANLVLDLEAKL--EDGIVENEAYYESSMG-LANGASNLYALRLHQNHQVNLLHHGGRFGPNDLRLA 225          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A061DGS8_THECC (K-box region and MADS-box transcription factor family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_000266 PE=4 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 2.063e-119
Identity = 183/238 (76.89%), Postives = 202/238 (84.87%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREI-----------RQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD---GTNDLRLA 996
            MGRGKIEIKKIEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSS+GKFHEF+SPNISTK FFDLYQKT GIDLW+SHYE+M+ENYRRLKEIN +LRREI           RQR+G DL +LNIKELQALEAKM SSL A+R+RKYHVIKTQTD +KKKVRNLE+RHANL++DLEAKL  +DGIVE   YYES+MG L NGASNLYALRL+QN Q  L+ H    G NDLRLA
Sbjct:    1 MGRGKIEIKKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFISPNISTKTFFDLYQKTLGIDLWSSHYEKMQENYRRLKEINNRLRREISKVDQGMYAFSRQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKKKVRNLEQRHANLVLDLEAKL--EDGIVENEAYYESSMG-LANGASNLYALRLHQNHQVNLLHHGGRFGPNDLRLA 235          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: Q003J2_VITVI (Flowering-related B-class MADS-box protein OS=Vitis vinifera GN=TM6 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 6.616e-101
Identity = 158/228 (69.30%), Postives = 187/228 (82.02%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQD-GIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD---GTNDLRLA 996
            MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFS+TGKFHE+ SP I+TK  +D YQKT GIDLW+SHYERM+EN R+LKEIN KLRREIRQRMG DL +L+I++L+ LE KMD+SL  +RERKYHVIKTQT+ ++KKVRNLEE+H NL+++ EAK D    G+VE  G YES +    NGASNLYA RL+Q    P + HD   G++DLRLA
Sbjct:    1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYTSPTITTKKVYDQYQKTLGIDLWSSHYERMQENLRKLKEINNKLRREIRQRMGEDLGDLSIEDLRGLEQKMDASLGLVRERKYHVIKTQTETYRKKVRNLEEQHGNLLLNFEAKCDDPHYGLVENDGDYESAVA-FANGASNLYAFRLHQAH--PNLHHDGGYGSHDLRLA 225          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: F6GWR1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02820 PE=4 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 8.241e-100
Identity = 158/228 (69.30%), Postives = 187/228 (82.02%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQD-GIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD---GTNDLRLA 996
            MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFS+TGKFHE+ SP I+TK  +D YQKT GIDLW+SHYERM+EN R+LKEIN KLRREIRQRMG DL +L+I++L+ LE KMD+SL  +RERKYHVIKTQT+ ++KKVRNLEE+H NL+++ EAK D    G+VE  G YES +    NGASNLYA RL+Q    P + HD   G++DLRLA
Sbjct:   82 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYTSPTITTKKVYDQYQKTLGIDLWSSHYERMQENLRKLKEINNKLRREIRQRMGEDLGDLSIEDLRGLEQKMDASLGLVRERKYHVIKTQTETYRKKVRNLEEQHGNLLLNFEAKCDDPHYGLVENDGDYESAVA-FANGASNLYAFRLHQAH--PNLHHDGGYGSHDLRLA 306          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A067FUM1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027470mg PE=4 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 3.700e-94
Identity = 148/230 (64.35%), Postives = 178/230 (77.39%), Query Frame = -1
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQD-GIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGT-----NDLRLA 996
            MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFS+TGKFHE++SP  +TK  FD YQK+ G+DLW++HY +M+E+YR+LKEIN KLR++IRQRMG DL +L  +EL+ LE  M SS   +RERK+HVIKTQTD +KKKVRNLEERH N+++D E K D    G+V+ G  Y+S M  L NGASNLYA R+ Q       LH GT     +DL LA
Sbjct:    1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGD-YQSAMA-LANGASNLYAFRMQQQN-----LHQGTGGYGSSDLTLA 223          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.280e-31
Identity = 78/203 (38.42%), Postives = 112/203 (55.17%), Query Frame = -1
Query:  442 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNIS------TKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLD------------GQDGIVETGGYY 996
            MGRG++E+K+IEN  NRQVT+SKRRNGL KKA EL+VLCDA+V+LI+FSS GK +EF S  I+          ++       +    S Y  M     +LK   + L+R  R  +G DL  L++KELQ LE +++ +L   R+RK  ++  Q ++ ++K R L E +  L   LE +               Q  +VE G  Y
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQSWYHEMS----KLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAY 199          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 2.941e-31
Identity = 85/242 (35.12%), Postives = 133/242 (54.96%), Query Frame = -1
Query:  319 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLY----------QKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDK-HKKKV----RNLE-ERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA*C 996
            MGRGKI I++I+N+T+RQVT+SKRRNGL KKA+EL++LCDA+V L++FSSTG+ +EF S N+ T    D Y            T+ I +W      + +    L+E +K+L       MG +LS L +++LQ LE +++ SL  IR RK +++K++ ++ H K       N+E  R  N++   + +L  +    E  G  ++        +S  Y+ R+ QN   P  L    +  R   C
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKT--VIDRYTNAKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQL-------MGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSLNVMSQQKLELYNKLQACEQRGATDAN-----ESSSTPYSFRIIQNANMPPSLELSQSQQREGEC 228          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.449e-31
Identity = 70/165 (42.42%), Postives = 103/165 (62.42%), Query Frame = -1
Query:  535 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKT-----------TGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKV 996
            MGRGKIEIK+I+NAT+RQVT+SKRR+GLFKKA+EL++LCDA+V L++FSST + ++F S   S K   + Y +T           +   LW      + +    L+E +       RQ +G  LS L++++LQ LE+K++ SL  IR RK +V+  Q  +  +KV
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS--SMKSIIERYNETKEDPHQTMNASSEAKLWQQEAASLRQQLHNLQEYH-------RQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKV 156          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.206e-30
Identity = 73/151 (48.34%), Postives = 101/151 (66.89%), Query Frame = -1
Query:  559 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTT--GIDLWNSHYERMEENYR---RLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQ 996
            MGRG++E+K+IEN  NRQVT++KRRNGL KKA EL+VLCDA+VSLI+FS+ GK +EF S +   K   + YQK +   I++ N   + +E +YR   +LK   + L+R+ R  +G DL  LN KEL+ LE ++D SL  +R      IKTQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLK-TLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVR-----CIKTQ 145          
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 3.003e-30
Identity = 82/222 (36.94%), Postives = 123/222 (55.41%), Query Frame = -1
Query:  361 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDL------YQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL---IMDLEAKLDGQDGIVETG-GYYESTMGLLPNGASNLYALRLYQNQQPPL 996
            MGRGKIEIK+IEN+TNRQVT+SKRR G+ KKA+E+ VLCDA+V +++FSS GK  ++ +P  +T  F  L      YQ  +G  LW+  ++ +     R+K+ N  ++ E+R   G DL+ L  KEL A+E  +++    +R++    +      HK+  + LE+ H  L   +   E +L G  GI E   GY+          AS  +  R+ Q   P L
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPK-TTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFRVHQQEVELSG--GIRELELGYHHDDRDF---AASMPFTFRV-QPSHPNL 211          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
U5L2F8_GOSHI2.613e-12782.02MADS box protein MADS52 OS=Gossypium hirsutum PE=2... [more]
D9IUY4_GOSHI5.173e-12680.34MADS protein OS=Gossypium hirsutum GN=MADS9 PE=2 S... [more]
A0A0D2RAQ7_GOSRA3.598e-12581.58Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DLS5_THECC9.630e-12380.62Floral homeotic protein DEFICIENS, putative isofor... [more]
A0A0D2PPX7_GOSRA1.242e-12273.15Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DFV0_THECC5.646e-12180.26Floral homeotic protein DEFICIENS, putative isofor... [more]
A0A061DGS8_THECC2.063e-11976.89K-box region and MADS-box transcription factor fam... [more]
Q003J2_VITVI6.616e-10169.30Flowering-related B-class MADS-box protein OS=Viti... [more]
F6GWR1_VITVI8.241e-10069.30Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067FUM1_CITSI3.700e-9464.35Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
MADS6_ORYSJ1.280e-3138.42MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD57_ORYSJ2.941e-3135.12MADS-box transcription factor 57 OS=Oryza sativa s... [more]
MAD23_ORYSJ7.449e-3142.42MADS-box transcription factor 23 OS=Oryza sativa s... [more]
SEP2_ARATH1.206e-3048.34Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MADS4_ORYSJ3.003e-3036.94MADS-box transcription factor 4 OS=Oryza sativa su... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..167
NoneNo IPR availableCOILSCoilCoilcoord: 77..107
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..208
NoneNo IPR availablePANTHERPTHR11945:SF219FLORAL HOMEOTIC PROTEIN APETALA 3coord: 2..208
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 67.42
coord: 38..59
score: 55.24
coord: 23..38
score: 75.63
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 2.1E-41
score: 153.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 9.3E-25
score: 85.7
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 32.674
IPR002100Transcription factor, MADS-boxSUPERFAMILY55455SRF-likecoord: 2..95
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 82..165
e-value: 2.3E-20
score: 72.4
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 84..178
score: 14.807

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013122 ID=g.arboreum_cottongen_reftransV1_0013122; Name=g.arboreum_cottongen_reftransV1_0013122; organism=Gossypium arboreum; type=contig; length=1122bp
CTCGCGAAAGAATTAACATCCCCGAACAAAGATAAATTGTAAGTAATTTA
GTATTACATCAATAACGCAACAACACTTTCACTTGTCTTAGGAAAAGAAA
AGTCATTAGGGCAATAAGGTACACCGAAAATCTCGCTACTTTCAGGCGCC
CATTAATTCACCATGCAACTTTCTAACTCATACATACATACATACATATA
TTGACATGAGTTAGCAGTATAGTAATGAAGAGATAGAGAATGTATGAGTT
AGCAGTATAGTAAAGAAGAGATAGAGATTAAATACAGTCTGCAATGGAGG
GGACATCCACAGAGACCAGCATCAAGCAAGGCGAAGATCATTGGTTCCAT
CGTGAAGAACAAGTGGAGGCTGTTGGTTTTGGTAAAGGCGAAGGGCATAT
AAATTAGAAGCTCCATTTGGTAGTAGTCCCATTGTTGATTCATAATATCC
TCCGGTTTCAACTATTCCATCTTGACCATCAAGCTTTGCCTCCAAGTCCA
TGATAAGATTTGCATGTCTTTCCTCCAAATTCCTTACCTTCTTCTTGTGT
TTGTCTGTTTGAGTTTTGATGACATGGTACTTTCTCTCACGTATAGCTAG
CAAAGAAGAATCCATTTTAGCTTCAAGAGCTTGCAGTTCCTTAATGTTAA
GTTCACTCAAGTCTCCACCCATTCTCTGCCTAATCTCCCTTCTCAGCTTC
TTGTTTATCTCCTTCAACCTCCTGTAATTTTCTTCCATTCTCTCATAATG
GGAGTTCCATAGATCAATCCCTGTGGTCTTTTGGTATAGATCAAAAAACC
CTTTTGTCGAGATGTTGGGGCTAAGGAACTCATGAAATTTGCCAGTGCTG
GAGAACATGATCAATGAAACCTTGGCGTCACAAAGAACAGTGAGCTCTTG
GGCTTTCTTGAATAAACCGTTCCTTCGTTTTGAATAAGTGACTTGCCTGT
TTGTAGCGTTCTCAATCTTCTTGATCTCGATCTTCCCACGACCCATTGTT
GGTTTCTTTCAAGTGAATGATCAAATGAGAAAGAGGGTAGCAGCTAGGCT
TAAAGGGGTTTGCAGCAAAATAAGGTTAAATGAGAAAAATGGTGATGAAA
AGGGAATTGAATCCCATATCGG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR002487TF_Kbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription