g.arboreum_cottongen_reftransV1_0013122, g.arboreum_cottongen_reftransV1_0013122 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013122
Unique Nameg.arboreum_cottongen_reftransV1_0013122
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0013122:1..1122 .
Chr1:135306793..135310141 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: U5L2F8_GOSHI (MADS box protein MADS52 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 2.613e-127
Identity = 187/228 (82.02%), Postives = 200/228 (87.72%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG----TNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKK RREIRQRMGGDL +LNIKELQALEAKMDSSL+AIR+RKYHVIKTQTD H+KKVRNLEE HANL+ DLE KLD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVLH G    +NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKSRREIRQRMGGDLDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHRKKVRNLEEGHANLVFDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFDSNDLRLA 224
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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: D9IUY4_GOSHI (MADS protein OS=Gossypium hirsutum GN=MADS9 PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 5.173e-126
Identity = 188/234 (80.34%), Postives = 201/234 (85.90%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKK------VRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG----TNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKK RREIRQRMGGDL +LNIKELQALEAKMDSSL+AIR+RKYHVIKTQTD H+KK      VRNLEERHANL+ DLE KLD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVLH G    +NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKSRREIRQRMGGDLDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHRKKDWNALQVRNLEERHANLVFDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFDSNDLRLA 230
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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2RAQ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G064900 PE=4 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.598e-125
Identity = 186/228 (81.58%), Postives = 199/228 (87.28%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD----GTNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGDL +LNIKELQALE KMDSSL+AIR+RKYHVIKTQTD H+KKVRNLEERHANL+ DL   LD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVLH     G+NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALETKMDSSLVAIRDRKYHVIKTQTDTHRKKVRNLEERHANLVFDL---LDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFGSNDLRLA 221
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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A061DLS5_THECC (Floral homeotic protein DEFICIENS, putative isoform 3 OS=Theobroma cacao GN=TCM_000266 PE=4 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 9.630e-123
Identity = 183/227 (80.62%), Postives = 202/227 (88.99%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD---GTNDLRLA 996
            MGRGKIEIKKIEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSS+GKFHEF+SPNISTK FFDLYQKT GIDLW+SHYE+M+ENYRRLKEIN +LRREIRQR+G DL +LNIKELQALEAKM SSL A+R+RKYHVIKTQTD +KKKVRNLE+RHANL++DLEAKL  +DGIVE   YYES+MG L NGASNLYALRL+QN Q  L+ H    G NDLRLA
Sbjct:    1 MGRGKIEIKKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFISPNISTKTFFDLYQKTLGIDLWSSHYEKMQENYRRLKEINNRLRREIRQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKKKVRNLEQRHANLVLDLEAKL--EDGIVENEAYYESSMG-LANGASNLYALRLHQNHQVNLLHHGGRFGPNDLRLA 224
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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2PPX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G064900 PE=4 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.242e-122
Identity = 188/257 (73.15%), Postives = 201/257 (78.21%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKK-----------------------------VRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD----GTNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGDL +LNIKELQALE KMDSSL+AIR+RKYHVIKTQTD H+KK                             VRNLEERHANL+ DLE KLD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVLH     G+NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALETKMDSSLVAIRDRKYHVIKTQTDTHRKKVSESNTIKTVACHSISRVLIIFEDWNALQVRNLEERHANLVFDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFGSNDLRLA 253
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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A061DFV0_THECC (Floral homeotic protein DEFICIENS, putative isoform 2 OS=Theobroma cacao GN=TCM_000266 PE=4 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 5.646e-121
Identity = 183/228 (80.26%), Postives = 202/228 (88.60%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREI-RQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD---GTNDLRLA 996
            MGRGKIEIKKIEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSS+GKFHEF+SPNISTK FFDLYQKT GIDLW+SHYE+M+ENYRRLKEIN +LRREI RQR+G DL +LNIKELQALEAKM SSL A+R+RKYHVIKTQTD +KKKVRNLE+RHANL++DLEAKL  +DGIVE   YYES+MG L NGASNLYALRL+QN Q  L+ H    G NDLRLA
Sbjct:    1 MGRGKIEIKKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFISPNISTKTFFDLYQKTLGIDLWSSHYEKMQENYRRLKEINNRLRREISRQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKKKVRNLEQRHANLVLDLEAKL--EDGIVENEAYYESSMG-LANGASNLYALRLHQNHQVNLLHHGGRFGPNDLRLA 225
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A061DGS8_THECC (K-box region and MADS-box transcription factor family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_000266 PE=4 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 2.063e-119
Identity = 183/238 (76.89%), Postives = 202/238 (84.87%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREI-----------RQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD---GTNDLRLA 996
            MGRGKIEIKKIEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSS+GKFHEF+SPNISTK FFDLYQKT GIDLW+SHYE+M+ENYRRLKEIN +LRREI           RQR+G DL +LNIKELQALEAKM SSL A+R+RKYHVIKTQTD +KKKVRNLE+RHANL++DLEAKL  +DGIVE   YYES+MG L NGASNLYALRL+QN Q  L+ H    G NDLRLA
Sbjct:    1 MGRGKIEIKKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFISPNISTKTFFDLYQKTLGIDLWSSHYEKMQENYRRLKEINNRLRREISKVDQGMYAFSRQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKKKVRNLEQRHANLVLDLEAKL--EDGIVENEAYYESSMG-LANGASNLYALRLHQNHQVNLLHHGGRFGPNDLRLA 235
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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: Q003J2_VITVI (Flowering-related B-class MADS-box protein OS=Vitis vinifera GN=TM6 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 6.616e-101
Identity = 158/228 (69.30%), Postives = 187/228 (82.02%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQD-GIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD---GTNDLRLA 996
            MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFS+TGKFHE+ SP I+TK  +D YQKT GIDLW+SHYERM+EN R+LKEIN KLRREIRQRMG DL +L+I++L+ LE KMD+SL  +RERKYHVIKTQT+ ++KKVRNLEE+H NL+++ EAK D    G+VE  G YES +    NGASNLYA RL+Q    P + HD   G++DLRLA
Sbjct:    1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYTSPTITTKKVYDQYQKTLGIDLWSSHYERMQENLRKLKEINNKLRREIRQRMGEDLGDLSIEDLRGLEQKMDASLGLVRERKYHVIKTQTETYRKKVRNLEEQHGNLLLNFEAKCDDPHYGLVENDGDYESAVA-FANGASNLYAFRLHQAH--PNLHHDGGYGSHDLRLA 225
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: F6GWR1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02820 PE=4 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 8.241e-100
Identity = 158/228 (69.30%), Postives = 187/228 (82.02%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQD-GIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD---GTNDLRLA 996
            MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFS+TGKFHE+ SP I+TK  +D YQKT GIDLW+SHYERM+EN R+LKEIN KLRREIRQRMG DL +L+I++L+ LE KMD+SL  +RERKYHVIKTQT+ ++KKVRNLEE+H NL+++ EAK D    G+VE  G YES +    NGASNLYA RL+Q    P + HD   G++DLRLA
Sbjct:   82 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYTSPTITTKKVYDQYQKTLGIDLWSSHYERMQENLRKLKEINNKLRREIRQRMGEDLGDLSIEDLRGLEQKMDASLGLVRERKYHVIKTQTETYRKKVRNLEEQHGNLLLNFEAKCDDPHYGLVENDGDYESAVA-FANGASNLYAFRLHQAH--PNLHHDGGYGSHDLRLA 306
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A067FUM1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027470mg PE=4 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 3.700e-94
Identity = 148/230 (64.35%), Postives = 178/230 (77.39%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQD-GIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGT-----NDLRLA 996
            MGRGKIEIK+IEN TNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFS+TGKFHE++SP  +TK  FD YQK+ G+DLW++HY +M+E+YR+LKEIN KLR++IRQRMG DL +L  +EL+ LE  M SS   +RERK+HVIKTQTD +KKKVRNLEERH N+++D E K D    G+V+ G  Y+S M  L NGASNLYA R+ Q       LH GT     +DL LA
Sbjct:    1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGD-YQSAMA-LANGASNLYAFRMQQQN-----LHQGTGGYGSSDLTLA 223
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.554e-85
Identity = 129/204 (63.24%), Postives = 160/204 (78.43%), Query Frame = -1 
Query:  385 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRL 996
            M RGKI+IK+IEN TNRQVTYSKRRNGLFKKA ELTVLCDAKVS+IM SSTGK HEF+SP+I+TK  FDLYQKT G+DLWNSHYE+M+E  R+LKE+N+ LR+EIRQRMG  L++LN ++L+ L   +D+SL  IRERKY VI  Q +  KKKVRN+EE H NL+++ +A+ +   G+VE  G Y S +G  PNG   + ALRL
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEFDARQEDPYGLVEQEGDYNSVLG-FPNGGHRILALRL 203
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 9.414e-80
Identity = 126/218 (57.80%), Postives = 158/218 (72.48%), Query Frame = -1 
Query:  346 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKL-DGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG 996
            M RGKI+IK+IEN TNRQVTYSKRRNGLFKKA EL+VLCDAKVS+IM SST K HE++SP  +TK  FD YQK  G+DLW+SHYE+M+E+ ++L E+N+ LRREIRQRMG  L++L  +++  L   MD+SL  IRERKY VI  Q D  KKKVRN+EE H NL+++ +A+  D   G+V+  G Y S +G  PNG   + ALRL  N  P   LH G
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLVDNEGDYNSVLG-FPNGGPRIIALRLPTNHHP--TLHSG 215
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.044e-70
Identity = 114/208 (54.81%), Postives = 149/208 (71.63%), Query Frame = -1 
Query:  391 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIV--ETGGYYESTMGLLPNG----ASNLYAL 996
            MGRGK+EI+KIEN TNRQVT+SKRRNG+ KKAQELTVLCDAKVSL+M SST K H +LSP +S K  +D YQK  G+DLW   +ERM+E +R++ E+N  LRREI +RMGGDL  L + EL AL+ +M+ +++ IR +KYH IK QT   +KK++NLEERH +L+M+LEAK  G    +  +    YE+       G    A+NL+AL
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDLVMELEAKFRGPQFAIGEDDPRNYEAAAAAAVYGNDVAAANLFAL 208
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 6.045e-67
Identity = 110/210 (52.38%), Postives = 150/210 (71.43%), Query Frame = -1 
Query:  370 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKL-DGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQ 996
            M RGKI+IK+IEN TNRQVTYSKRRNGLFKKA ELTVLCDA+VS+IMFSS+ K HE++SPN +TK   DLYQ  + +D+W + YERM+E  R+L E N+ LR +I+QR+G  L EL+I+EL+ LE +M+++   +RERK+  +  Q +  KKK ++ ++   NLI +LE +  D   G+V+ GG Y+S +G    G S  YALR +QN  
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDPHYGLVDNGGDYDSVLGYQIEG-SRAYALRFHQNHH 209
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 7.041e-64
Identity = 115/226 (50.88%), Postives = 150/226 (66.37%), Query Frame = -1 
Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPL--VLHDGTNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRR G+ KKA+ELTVLCDA+V++IMFSSTGK+HEF SP+   KG FD YQ+  G  LW   YE M+     LK+IN+ LR EIRQRMG DL  L   EL+ LE  +D++L  +R RKYHVI TQT+ +KKKV++  E +  L  +L  + +   G V+         G     A++++A R+  + QP L  + + G +DLRL 
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETLQQELGLREEPAFGFVDN-TGGGWDGGAGAGAAADMFAFRVVPS-QPNLHGMAYGGNHDLRLG 224
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.833e-41
Identity = 78/171 (45.61%), Postives = 113/171 (66.08%), Query Frame = -1 
Query:  484 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAK 996
            MGRGKIEIK+IEN++NRQVTYSKRRNG+ KKA+E+TVLCDAKVSLI+F ++GK HE+ SP+ +     D YQKT+G  LW++ +E +     R+K+ N  ++ ++R   G D++ LN KEL  LE  + + L +I  ++  +++      +K  + LEE H  L   L  K
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEILRMV----RKNDQILEEEHKQLQYALHQK 167
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.226e-40
Identity = 86/216 (39.81%), Postives = 131/216 (60.65%), Query Frame = -1 
Query:  361 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDL-EAKLDG-QDGIVETGGYYE--STMGLLPNGASNLYALRLYQNQQPPL 996
            MGRGKIEIK+IEN++NRQVTYSKRRNG+ KKA+E++VLCDA VS+I+F+S+GK HEF SP+ +     D Y K +G  LW+  +E ++    R+K+ N  ++ E+R   G D++ LN KEL  LE  +++   A++ ++   ++    KH + V   EE + +L   L +  LD   D ++E+   Y+      +    A   +A R+ Q  QP L
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEFVRMMR-KHNEMV---EEENQSLQFKLRQMHLDPMNDNVMESQAVYDHHHHQNIADYEAQMPFAFRV-QPMQPNL 211
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.063e-38
Identity = 74/164 (45.12%), Postives = 112/164 (68.29%), Query Frame = -1 
Query:  505 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL 996
            MGRGKIEIK+IEN++NRQVTYSKRRNG+ KKA+E++VLCDA+VS+I+F+S+GK HEF S   S     D Y K TG  LW++ +E ++    ++K+ N  ++ E+R   G D++ LN +EL  LE  +D+ L +IR ++  +++      +KK +++EE    L
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST--SLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLLRMM----RKKTQSMEEEQDQL 158
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.216e-38
Identity = 67/143 (46.85%), Postives = 97/143 (67.83%), Query Frame = -1 
Query:  568 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVI 996
            MGRGKIEIK+IENA NR VT+SKRRNGL KKA+E+TVLCDAKV+LI+F+S GK  ++  P++      D YQK +G  LW++ +E +     R+K+ N  L+ E+R   G D+  LN+K L A+E  ++  L  +R+ +  ++
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEIL 143
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.719e-37
Identity = 79/188 (42.02%), Postives = 123/188 (65.43%), Query Frame = -1 
Query:  445 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHAN---LIMDLEAKLDG-QDGIVETGGY 996
            MGRGKIEIK+IEN TNRQVT+SKRR GL KKA EL+VLCDA++ LI+FSS+GK  E+ S + S K   + YQK +G  +     + +     R+K  N+KL+  IR+ MG DL+ L + EL  L  +++S+   +R RK  ++  Q +  ++K R LE+++++   L+ + +A ++G Q+ ++E G +
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQEPLLEFGVF 188
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
U5L2F8_GOSHI2.613e-12782.02MADS box protein MADS52 OS=Gossypium hirsutum PE=2... [more]
D9IUY4_GOSHI5.173e-12680.34MADS protein OS=Gossypium hirsutum GN=MADS9 PE=2 S... [more]
A0A0D2RAQ7_GOSRA3.598e-12581.58Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DLS5_THECC9.630e-12380.62Floral homeotic protein DEFICIENS, putative isofor... [more]
A0A0D2PPX7_GOSRA1.242e-12273.15Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DFV0_THECC5.646e-12180.26Floral homeotic protein DEFICIENS, putative isofor... [more]
A0A061DGS8_THECC2.063e-11976.89K-box region and MADS-box transcription factor fam... [more]
Q003J2_VITVI6.616e-10169.30Flowering-related B-class MADS-box protein OS=Viti... [more]
F6GWR1_VITVI8.241e-10069.30Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067FUM1_CITSI3.700e-9464.35Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
MADS1_PETHY3.554e-8563.24Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
DEFA_ANTMA9.414e-8057.80Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
CMB2_DIACA1.044e-7054.81MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AP3_ARATH6.045e-6752.38Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MAD16_ORYSJ7.041e-6450.88MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MADS2_PETHY7.833e-4145.61Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
GLOB_ANTMA2.226e-4039.81Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
GLOB_TOBAC1.063e-3845.12Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
PIST_ARATH9.216e-3846.85Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
GGM13_GNEGN2.719e-3742.02MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..167
NoneNo IPR availableCOILSCoilCoilcoord: 77..107
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..208
NoneNo IPR availablePANTHERPTHR11945:SF219FLORAL HOMEOTIC PROTEIN APETALA 3coord: 2..208
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 67.42
coord: 38..59
score: 55.24
coord: 23..38
score: 75.63
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 2.1E-41
score: 153.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 9.3E-25
score: 85.7
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 32.674
IPR002100Transcription factor, MADS-boxSUPERFAMILY55455SRF-likecoord: 2..95
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 82..165
e-value: 2.3E-20
score: 72.4
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 84..178
score: 14.807

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013122 ID=g.arboreum_cottongen_reftransV1_0013122; Name=g.arboreum_cottongen_reftransV1_0013122; organism=Gossypium arboreum; type=contig; length=1122bp
CTCGCGAAAGAATTAACATCCCCGAACAAAGATAAATTGTAAGTAATTTA
GTATTACATCAATAACGCAACAACACTTTCACTTGTCTTAGGAAAAGAAA
AGTCATTAGGGCAATAAGGTACACCGAAAATCTCGCTACTTTCAGGCGCC
CATTAATTCACCATGCAACTTTCTAACTCATACATACATACATACATATA
TTGACATGAGTTAGCAGTATAGTAATGAAGAGATAGAGAATGTATGAGTT
AGCAGTATAGTAAAGAAGAGATAGAGATTAAATACAGTCTGCAATGGAGG
GGACATCCACAGAGACCAGCATCAAGCAAGGCGAAGATCATTGGTTCCAT
CGTGAAGAACAAGTGGAGGCTGTTGGTTTTGGTAAAGGCGAAGGGCATAT
AAATTAGAAGCTCCATTTGGTAGTAGTCCCATTGTTGATTCATAATATCC
TCCGGTTTCAACTATTCCATCTTGACCATCAAGCTTTGCCTCCAAGTCCA
TGATAAGATTTGCATGTCTTTCCTCCAAATTCCTTACCTTCTTCTTGTGT
TTGTCTGTTTGAGTTTTGATGACATGGTACTTTCTCTCACGTATAGCTAG
CAAAGAAGAATCCATTTTAGCTTCAAGAGCTTGCAGTTCCTTAATGTTAA
GTTCACTCAAGTCTCCACCCATTCTCTGCCTAATCTCCCTTCTCAGCTTC
TTGTTTATCTCCTTCAACCTCCTGTAATTTTCTTCCATTCTCTCATAATG
GGAGTTCCATAGATCAATCCCTGTGGTCTTTTGGTATAGATCAAAAAACC
CTTTTGTCGAGATGTTGGGGCTAAGGAACTCATGAAATTTGCCAGTGCTG
GAGAACATGATCAATGAAACCTTGGCGTCACAAAGAACAGTGAGCTCTTG
GGCTTTCTTGAATAAACCGTTCCTTCGTTTTGAATAAGTGACTTGCCTGT
TTGTAGCGTTCTCAATCTTCTTGATCTCGATCTTCCCACGACCCATTGTT
GGTTTCTTTCAAGTGAATGATCAAATGAGAAAGAGGGTAGCAGCTAGGCT
TAAAGGGGTTTGCAGCAAAATAAGGTTAAATGAGAAAAATGGTGATGAAA
AGGGAATTGAATCCCATATCGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR002487TF_Kbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription