g.arboreum_cottongen_reftransV1_0013122, g.arboreum_cottongen_reftransV1_0013122 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: U5L318_GOSHI (MADS box protein MADS51 OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 449.899 bits (1156), Expect = 6.666e-156 Identity = 218/224 (97.32%), Postives = 220/224 (98.21%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQE TVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYR LKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL+MDLEAKLDGQDGIVETGGYYESTMGLLP GASNLYALRLYQNQQPPLVLH GTNDLRLA Sbjct: 1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQEPTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRSLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLVMDLEAKLDGQDGIVETGGYYESTMGLLPTGASNLYALRLYQNQQPPLVLHHGTNDLRLA 224
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2NUR2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1) HSP 1 Score: 446.817 bits (1148), Expect = 1.416e-154 Identity = 216/224 (96.43%), Postives = 219/224 (97.77%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL+MDLEAKLD QDGIVETGGYYESTMGLLP GASNLYALRLYQNQQPPLVLH GTNDLRLA Sbjct: 1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLVMDLEAKLDDQDGIVETGGYYESTMGLLPTGASNLYALRLYQNQQPPLVLHHGTNDLRLA 224
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2MHS8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1) HSP 1 Score: 439.884 bits (1130), Expect = 7.177e-152 Identity = 215/224 (95.98%), Postives = 218/224 (97.32%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL+MDL AKLD QDGIVETGGYYESTMGLLP GASNLYALRLYQNQQPPLVLH GTNDLRLA Sbjct: 1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLVMDL-AKLDDQDGIVETGGYYESTMGLLPTGASNLYALRLYQNQQPPLVLHHGTNDLRLA 223
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2REV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1) HSP 1 Score: 407.527 bits (1046), Expect = 2.640e-139 Identity = 202/224 (90.18%), Postives = 205/224 (91.52%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRER KVRNLEERHANL+MDLEAKLD QDGIVETGGYYESTMGLLP GASNLYALRLYQNQQPPLVLH GTNDLRLA Sbjct: 1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRER--------------KVRNLEERHANLVMDLEAKLDDQDGIVETGGYYESTMGLLPTGASNLYALRLYQNQQPPLVLHHGTNDLRLA 210
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2QLH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1) HSP 1 Score: 400.979 bits (1029), Expect = 7.625e-137 Identity = 201/224 (89.73%), Postives = 204/224 (91.07%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRER KVRNLEERHANL+MDL AKLD QDGIVETGGYYESTMGLLP GASNLYALRLYQNQQPPLVLH GTNDLRLA Sbjct: 1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRER--------------KVRNLEERHANLVMDL-AKLDDQDGIVETGGYYESTMGLLPTGASNLYALRLYQNQQPPLVLHHGTNDLRLA 209
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: U5L2C2_GOSHI (MADS box protein MADS59 OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 3.638e-130 Identity = 191/228 (83.77%), Postives = 203/228 (89.04%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG----TNDLRLA 996 MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGDL +LNIKELQALEAKMDSSL+AIR+RKYHVIKTQTD HKKKVRNLEERHANL++DLE KLD QDGIVE+ GYY NGASNL+ALRLYQ P LVL G +NDLRLA Sbjct: 1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHKKKVRNLEERHANLVLDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLQHGGRFDSNDLRLA 224
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0B0N9Z3_GOSAR (Floral homeotic PMADS 1 OS=Gossypium arboreum GN=F383_16162 PE=4 SV=1) HSP 1 Score: 383.645 bits (984), Expect = 1.002e-129 Identity = 189/228 (82.89%), Postives = 202/228 (88.60%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD----GTNDLRLA 996 MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGD+ +LNIKELQALEAKMDSSL+AIR+RKYHVIKTQTD HKKKVRNLEERHANL+ DLE KLD QDGIVE+ GYY NGASNL+ALRLYQ P LVLH G+NDLRLA Sbjct: 1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDVDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHKKKVRNLEERHANLVFDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFGSNDLRLA 224
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2T1I0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G064900 PE=4 SV=1) HSP 1 Score: 381.333 bits (978), Expect = 6.959e-129 Identity = 188/228 (82.46%), Postives = 201/228 (88.16%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD----GTNDLRLA 996 MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGDL +LNIKELQALE KMDSSL+AIR+RKYHVIKTQTD H+KKVRNLEERHANL+ DLE KLD QDGIVE+ GYY NGASNL+ALRLYQ P LVLH G+NDLRLA Sbjct: 1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALETKMDSSLVAIRDRKYHVIKTQTDTHRKKVRNLEERHANLVFDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFGSNDLRLA 224
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: G8C426_GOSHI (Transcription factor TM6 OS=Gossypium hirsutum GN=TM6 PE=2 SV=1) HSP 1 Score: 379.407 bits (973), Expect = 4.628e-128 Identity = 188/228 (82.46%), Postives = 201/228 (88.16%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD----GTNDLRLA 996 MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGDL +LNIKELQALEAKMDSSL+AIR+RKYHVIKTQTD HKKKVRNLEERHANL+ DLE KLD Q+GIVE+ GYY NGASNL+ALRLYQ P LVL G+NDLRLA Sbjct: 1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHKKKVRNLEERHANLVFDLETKLDQQNGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLQHGGRFGSNDLRLA 224
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0B0P9B0_GOSAR (Floral homeotic PMADS 1 OS=Gossypium arboreum GN=F383_10171 PE=4 SV=1) HSP 1 Score: 377.096 bits (967), Expect = 1.166e-127 Identity = 189/224 (84.38%), Postives = 190/224 (84.82%), Query Frame = -1 Query: 325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDL +KHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA Sbjct: 1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDL----------------------------------NKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 190
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.280e-31 Identity = 78/203 (38.42%), Postives = 112/203 (55.17%), Query Frame = -1 Query: 442 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNIS------TKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLD------------GQDGIVETGGYY 996 MGRG++E+K+IEN NRQVT+SKRRNGL KKA EL+VLCDA+V+LI+FSS GK +EF S I+ ++ + S Y M +LK + L+R R +G DL L++KELQ LE +++ +L R+RK ++ Q ++ ++K R L E + L LE + Q +VE G Y Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQSWYHEMS----KLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAY 199
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 2.941e-31 Identity = 85/242 (35.12%), Postives = 133/242 (54.96%), Query Frame = -1 Query: 319 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLY----------QKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDK-HKKKV----RNLE-ERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA*C 996 MGRGKI I++I+N+T+RQVT+SKRRNGL KKA+EL++LCDA+V L++FSSTG+ +EF S N+ T D Y T+ I +W + + L+E +K+L MG +LS L +++LQ LE +++ SL IR RK +++K++ ++ H K N+E R N++ + +L + E G ++ +S Y+ R+ QN P L + R C Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKT--VIDRYTNAKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQL-------MGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSLNVMSQQKLELYNKLQACEQRGATDAN-----ESSSTPYSFRIIQNANMPPSLELSQSQQREGEC 228
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.449e-31 Identity = 70/165 (42.42%), Postives = 103/165 (62.42%), Query Frame = -1 Query: 535 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKT-----------TGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKV 996 MGRGKIEIK+I+NAT+RQVT+SKRR+GLFKKA+EL++LCDA+V L++FSST + ++F S S K + Y +T + LW + + L+E + RQ +G LS L++++LQ LE+K++ SL IR RK +V+ Q + +KV Sbjct: 1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS--SMKSIIERYNETKEDPHQTMNASSEAKLWQQEAASLRQQLHNLQEYH-------RQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKV 156
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.206e-30 Identity = 73/151 (48.34%), Postives = 101/151 (66.89%), Query Frame = -1 Query: 559 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTT--GIDLWNSHYERMEENYR---RLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQ 996 MGRG++E+K+IEN NRQVT++KRRNGL KKA EL+VLCDA+VSLI+FS+ GK +EF S + K + YQK + I++ N + +E +YR +LK + L+R+ R +G DL LN KEL+ LE ++D SL +R IKTQ Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLK-TLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVR-----CIKTQ 145
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3) HSP 1 Score: 120.168 bits (300), Expect = 3.003e-30 Identity = 82/222 (36.94%), Postives = 123/222 (55.41%), Query Frame = -1 Query: 361 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDL------YQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL---IMDLEAKLDGQDGIVETG-GYYESTMGLLPNGASNLYALRLYQNQQPPL 996 MGRGKIEIK+IEN+TNRQVT+SKRR G+ KKA+E+ VLCDA+V +++FSS GK ++ +P +T F L YQ +G LW+ ++ + R+K+ N ++ E+R G DL+ L KEL A+E +++ +R++ + HK+ + LE+ H L + E +L G GI E GY+ AS + R+ Q P L Sbjct: 1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPK-TTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFRVHQQEVELSG--GIRELELGYHHDDRDF---AASMPFTFRV-QPSHPNL 211 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013122 ID=g.arboreum_cottongen_reftransV1_0013122; Name=g.arboreum_cottongen_reftransV1_0013122; organism=Gossypium arboreum; type=contig; length=1122bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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