g.arboreum_cottongen_reftransV1_0013122, g.arboreum_cottongen_reftransV1_0013122 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0013122
Unique Name	g.arboreum_cottongen_reftransV1_0013122
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1122

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0013122:1..1122 . Chr1:135306793..135310141 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: U5L318_GOSHI (MADS box protein MADS51 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 449.899 bits (1156), Expect = 6.666e-156
Identity = 218/224 (97.32%), Postives = 220/224 (98.21%), Query Frame = -1

Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996
            MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQE TVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYR LKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL+MDLEAKLDGQDGIVETGGYYESTMGLLP GASNLYALRLYQNQQPPLVLH GTNDLRLA
Sbjct:    1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQEPTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRSLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLVMDLEAKLDGQDGIVETGGYYESTMGLLPTGASNLYALRLYQNQQPPLVLHHGTNDLRLA 224

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2NUR2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1)

HSP 1 Score: 446.817 bits (1148), Expect = 1.416e-154
Identity = 216/224 (96.43%), Postives = 219/224 (97.77%), Query Frame = -1

Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996
            MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL+MDLEAKLD QDGIVETGGYYESTMGLLP GASNLYALRLYQNQQPPLVLH GTNDLRLA
Sbjct:    1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLVMDLEAKLDDQDGIVETGGYYESTMGLLPTGASNLYALRLYQNQQPPLVLHHGTNDLRLA 224

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2MHS8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1)

HSP 1 Score: 439.884 bits (1130), Expect = 7.177e-152
Identity = 215/224 (95.98%), Postives = 218/224 (97.32%), Query Frame = -1

Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996
            MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL+MDL AKLD QDGIVETGGYYESTMGLLP GASNLYALRLYQNQQPPLVLH GTNDLRLA
Sbjct:    1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLVMDL-AKLDDQDGIVETGGYYESTMGLLPTGASNLYALRLYQNQQPPLVLHHGTNDLRLA 223

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2REV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 2.640e-139
Identity = 202/224 (90.18%), Postives = 205/224 (91.52%), Query Frame = -1

Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996
            MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRER              KVRNLEERHANL+MDLEAKLD QDGIVETGGYYESTMGLLP GASNLYALRLYQNQQPPLVLH GTNDLRLA
Sbjct:    1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRER--------------KVRNLEERHANLVMDLEAKLDDQDGIVETGGYYESTMGLLPTGASNLYALRLYQNQQPPLVLHHGTNDLRLA 210

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2QLH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G011500 PE=4 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 7.625e-137
Identity = 201/224 (89.73%), Postives = 204/224 (91.07%), Query Frame = -1

Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996
            MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKG FDLYQK TGIDLWNSHYERM+ENYRRLKEINKKLRREIRQRMGGDL+ELNIKELQALEAKMDSSLLAIRER              KVRNLEERHANL+MDL AKLD QDGIVETGGYYESTMGLLP GASNLYALRLYQNQQPPLVLH GTNDLRLA
Sbjct:    1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGVFDLYQKATGIDLWNSHYERMDENYRRLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRER--------------KVRNLEERHANLVMDL-AKLDDQDGIVETGGYYESTMGLLPTGASNLYALRLYQNQQPPLVLHHGTNDLRLA 209

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: U5L2C2_GOSHI (MADS box protein MADS59 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.638e-130
Identity = 191/228 (83.77%), Postives = 203/228 (89.04%), Query Frame = -1

Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDG----TNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGDL +LNIKELQALEAKMDSSL+AIR+RKYHVIKTQTD HKKKVRNLEERHANL++DLE KLD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVL  G    +NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHKKKVRNLEERHANLVLDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLQHGGRFDSNDLRLA 224

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0B0N9Z3_GOSAR (Floral homeotic PMADS 1 OS=Gossypium arboreum GN=F383_16162 PE=4 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 1.002e-129
Identity = 189/228 (82.89%), Postives = 202/228 (88.60%), Query Frame = -1

Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD----GTNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGD+ +LNIKELQALEAKMDSSL+AIR+RKYHVIKTQTD HKKKVRNLEERHANL+ DLE KLD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVLH     G+NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDVDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHKKKVRNLEERHANLVFDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFGSNDLRLA 224

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0D2T1I0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G064900 PE=4 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 6.959e-129
Identity = 188/228 (82.46%), Postives = 201/228 (88.16%), Query Frame = -1

Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD----GTNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGDL +LNIKELQALE KMDSSL+AIR+RKYHVIKTQTD H+KKVRNLEERHANL+ DLE KLD QDGIVE+ GYY        NGASNL+ALRLYQ   P LVLH     G+NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALETKMDSSLVAIRDRKYHVIKTQTDTHRKKVRNLEERHANLVFDLETKLDQQDGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLHHGGRFGSNDLRLA 224

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: G8C426_GOSHI (Transcription factor TM6 OS=Gossypium hirsutum GN=TM6 PE=2 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 4.628e-128
Identity = 188/228 (82.46%), Postives = 201/228 (88.16%), Query Frame = -1

Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHD----GTNDLRLA 996
            MGRGKIEIK+IENATNRQVTYSKRRNG+FKKAQELTVLCDAKVSLIMFSSTGKFHEF+SPNISTK FFDLYQKTTG DLW SHYE+M+ENYRRLKEINKKLRREIRQRMGGDL +LNIKELQALEAKMDSSL+AIR+RKYHVIKTQTD HKKKVRNLEERHANL+ DLE KLD Q+GIVE+ GYY        NGASNL+ALRLYQ   P LVL      G+NDLRLA
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFISPNISTKAFFDLYQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDLDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHKKKVRNLEERHANLVFDLETKLDQQNGIVESEGYYNEA----ANGASNLHALRLYQIHHPNLVLQHGGRFGSNDLRLA 224

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Match: A0A0B0P9B0_GOSAR (Floral homeotic PMADS 1 OS=Gossypium arboreum GN=F383_10171 PE=4 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 1.166e-127
Identity = 189/224 (84.38%), Postives = 190/224 (84.82%), Query Frame = -1

Query:  325 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 996
            MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDL                                  +KHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA
Sbjct:    1 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDL----------------------------------NKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPNGASNLYALRLYQNQQPPLVLHDGTNDLRLA 190

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.141e-37
Identity = 75/170 (44.12%), Postives = 109/170 (64.12%), Query Frame = -1

Query:  505 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINK------KLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL 996
            MGRGKIEIK+IEN+TNRQVT+SKRR GL KKA EL VLCDA+V +++FSSTGK  E+ SP  S +   + YQ  T     NSH+E +  + + L E+ +      KL   IR+  G DLS L + ++  LE +++ S+  +R RK+ ++  Q D  ++K + LE+++  L
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHAT-----NSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFL 165

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 9.795e-37
Identity = 73/164 (44.51%), Postives = 111/164 (67.68%), Query Frame = -1

Query:  505 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL 996
            MGRGKIEIK+IEN++NRQVTYSKRRNG+ KKA+E++VLCDA+VS+I+F+S+GK HEF S   S     D Y K TG  L ++ +E ++    ++K+ N  ++ E+R   G D++ LN +EL  LE  +++ L +IR ++  V++      +KK +++EE    L
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST--SLVDILDQYHKLTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLRMM----RKKTQSMEEEQDQL 158

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.947e-36
Identity = 74/171 (43.27%), Postives = 108/171 (63.16%), Query Frame = -1

Query:  502 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINK------KLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLI 996
            MGRGKIEIK+IENATNRQVT+SKRR GL KKA EL VLCDA+V +++FSSTGK  E+ SP  S +   + YQ  T     N+H+E +  + +   E+ +      KL   IR+  G DLS L + ++  LE +++ S+  +R RK+ ++  Q D  ++K   LE++++ L 
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVT-----NTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLC 166

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.997e-34
Identity = 70/194 (36.08%), Postives = 116/194 (59.79%), Query Frame = -1

Query:  415 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDGQDGIVETGGYYESTMGLLPN 996
            MGRGKIEIK+IEN+TNRQVT+SKRR+G+ KKA+E++VLCDA+V +++FSS GK +++ SP  S     + YQ  +G  LW+  ++ +     R+K+ N  ++ E+R   G DL+ L  KEL  +E  +D+ ++ + ++    +    ++H +  + LE+ +  L   L      Q  I  +G   +  +G  P+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDK----LMDHWERHVRTDKMLEDENKLLAFKLH-----QQDIALSGSMRDLELGYHPD 185

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.900e-33
Identity = 75/175 (42.86%), Postives = 111/175 (63.43%), Query Frame = -1

Query:  484 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENY----RRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAK 996
            MGRG++E+K+IEN  NRQVT+SKRRNGL KKA EL+VLCDA+V+LI+FSS GK +EF S  I +    + Y +     L N+  E   +++     +LK   + L R  R  +G DL E+ +KELQALE +++++L A R+RK  V+  + +  +KK R L + +  L +  E +
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIEST--IERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETE 173

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.927e-33
Identity = 84/198 (42.42%), Postives = 116/198 (58.59%), Query Frame = -1

Query:  448 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNI--STKGFFDLYQKTTGID--LWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLEAKLDG-------QD----GIVETGG 996
            MGRG++E+K+IEN  NRQVT+SKRRNGL KKA EL+VLCDA+V+LI+FSS GK +EF S  I  + + +        G +  L    ++   +   RLK   + L+R  R  +G DL  L+IKELQ LE +++ SL   R+RK  ++  Q D  ++K R L E +  L   LEA+ D        QD    G V +GG
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVVSGG 198

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.562e-32
Identity = 72/166 (43.37%), Postives = 99/166 (59.64%), Query Frame = -1

Query:  505 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSH--YERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANL 996
            MGRGKIEIKKIEN T RQVT+SKRR GL KK +EL++LCDA + LI+FS+TGK  EF S         D Y  T G+ L + H   E++      L+     L   +R   G DL+ +   EL  LE +++ S+L +RERK  +++ Q +   +K R LEE + N+
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNM 166

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.291e-32
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = -1

Query:  580 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTTGIDLWNSHYERMEENYR------RLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERK 996
            MGRG++E+KKIEN TNRQVT+SKRR GL KKA EL +LCDA++ +I+FS TGK +E+ SP       FD Y K       ++ +E M+   R      R+K+ N +LR  +RQ MG DL+ L ++++  LE +++ SL  +R RK
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAP-----STRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRK 140

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 4.323e-32
Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = -1

Query:  568 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKT----TGIDLWNSHYERMEENYRRLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVI 996
            MGRGKI I++I+N+T+RQVT+SKRRNG+FKKA+EL +LCDA+V L++FSSTG+ +E+ S   S K   D Y K+      +   NS  +  +     L++    L+   RQ MG DLS LN+KELQ+LE +++ SL ++R +K HV+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSS--TSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVL 145

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.244e-31
Identity = 77/174 (44.25%), Postives = 110/174 (63.22%), Query Frame = -1

Query:  490 MGRGKIEIKKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFLSPNISTKGFFDLYQKTT--GIDLWNSHYERMEENYR---RLKEINKKLRREIRQRMGGDLSELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLIMDLE 996
            MGRG++E+K+IEN  NRQVT++KRRNGL KKA EL+VLCDA+V+LI+FS+ GK +EF S +   K   D YQK +   I++ N   + +E +YR   +LK   + L+R+ R  +G DL  LN KEL+ LE ++D SL  +R  K   +  Q    + K + L E +  L M L+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKT-LDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLD 173

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
U5L318_GOSHI	6.666e-156	97.32	MADS box protein MADS51 OS=Gossypium hirsutum PE=2...	[more]
A0A0D2NUR2_GOSRA	1.416e-154	96.43	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2MHS8_GOSRA	7.177e-152	95.98	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2REV0_GOSRA	2.640e-139	90.18	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QLH0_GOSRA	7.625e-137	89.73	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
U5L2C2_GOSHI	3.638e-130	83.77	MADS box protein MADS59 OS=Gossypium hirsutum PE=2...	[more]
A0A0B0N9Z3_GOSAR	1.002e-129	82.89	Floral homeotic PMADS 1 OS=Gossypium arboreum GN=F...	[more]
A0A0D2T1I0_GOSRA	6.959e-129	82.46	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
G8C426_GOSHI	4.628e-128	82.46	Transcription factor TM6 OS=Gossypium hirsutum GN=...	[more]
A0A0B0P9B0_GOSAR	1.166e-127	84.38	Floral homeotic PMADS 1 OS=Gossypium arboreum GN=F...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0013122 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
M17_MAIZE	8.141e-37	44.12	MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=...	[more]
FBP1_PETHY	9.795e-37	44.51	Floral homeotic protein FBP1 OS=Petunia hybrida GN...	[more]
MAD29_ORYSJ	2.947e-36	43.27	MADS-box transcription factor 29 OS=Oryza sativa s...	[more]
MADS2_ORYSJ	7.997e-34	36.08	MADS-box transcription factor 2 OS=Oryza sativa su...	[more]
AGL6_ARATH	1.900e-33	42.86	Agamous-like MADS-box protein AGL6 OS=Arabidopsis ...	[more]
MAD17_ORYSJ	1.927e-33	42.42	MADS-box transcription factor 17 OS=Oryza sativa s...	[more]
TT16_ARATH	1.562e-32	43.37	Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia...	[more]
MAD31_ORYSJ	2.291e-32	45.52	MADS-box transcription factor 31 OS=Oryza sativa s...	[more]
MAD27_ORYSJ	4.323e-32	46.94	MADS-box transcription factor 27 OS=Oryza sativa s...	[more]
SEP1_ARATH	1.244e-31	44.25	Developmental protein SEPALLATA 1 OS=Arabidopsis t...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 147..167
None	No IPR available	COILS	Coil	Coil	coord: 77..107
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..208
None	No IPR available	PANTHER	PTHR11945:SF219	FLORAL HOMEOTIC PROTEIN APETALA 3	coord: 2..208
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 67.42 coord: 38..59 score: 55.24 coord: 23..38 score: 75.63
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 2.1E-41 score: 153.6
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 9.3E-25 score: 85.7
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 32.674
IPR002100	Transcription factor, MADS-box	SUPERFAMILY	55455	SRF-like	coord: 2..95
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 82..165 e-value: 2.3E-20 score: 72.4
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 84..178 score: 14.807

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0013122 ID=g.arboreum_cottongen_reftransV1_0013122; Name=g.arboreum_cottongen_reftransV1_0013122; organism=Gossypium arboreum; type=contig; length=1122bp
CTCGCGAAAGAATTAACATCCCCGAACAAAGATAAATTGTAAGTAATTTA
GTATTACATCAATAACGCAACAACACTTTCACTTGTCTTAGGAAAAGAAA
AGTCATTAGGGCAATAAGGTACACCGAAAATCTCGCTACTTTCAGGCGCC
CATTAATTCACCATGCAACTTTCTAACTCATACATACATACATACATATA
TTGACATGAGTTAGCAGTATAGTAATGAAGAGATAGAGAATGTATGAGTT
AGCAGTATAGTAAAGAAGAGATAGAGATTAAATACAGTCTGCAATGGAGG
GGACATCCACAGAGACCAGCATCAAGCAAGGCGAAGATCATTGGTTCCAT
CGTGAAGAACAAGTGGAGGCTGTTGGTTTTGGTAAAGGCGAAGGGCATAT
AAATTAGAAGCTCCATTTGGTAGTAGTCCCATTGTTGATTCATAATATCC
TCCGGTTTCAACTATTCCATCTTGACCATCAAGCTTTGCCTCCAAGTCCA
TGATAAGATTTGCATGTCTTTCCTCCAAATTCCTTACCTTCTTCTTGTGT
TTGTCTGTTTGAGTTTTGATGACATGGTACTTTCTCTCACGTATAGCTAG
CAAAGAAGAATCCATTTTAGCTTCAAGAGCTTGCAGTTCCTTAATGTTAA
GTTCACTCAAGTCTCCACCCATTCTCTGCCTAATCTCCCTTCTCAGCTTC
TTGTTTATCTCCTTCAACCTCCTGTAATTTTCTTCCATTCTCTCATAATG
GGAGTTCCATAGATCAATCCCTGTGGTCTTTTGGTATAGATCAAAAAACC
CTTTTGTCGAGATGTTGGGGCTAAGGAACTCATGAAATTTGCCAGTGCTG
GAGAACATGATCAATGAAACCTTGGCGTCACAAAGAACAGTGAGCTCTTG
GGCTTTCTTGAATAAACCGTTCCTTCGTTTTGAATAAGTGACTTGCCTGT
TTGTAGCGTTCTCAATCTTCTTGATCTCGATCTTCCCACGACCCATTGTT
GGTTTCTTTCAAGTGAATGATCAAATGAGAAAGAGGGTAGCAGCTAGGCT
TAAAGGGGTTTGCAGCAAAATAAGGTTAAATGAGAAAAATGGTGATGAAA
AGGGAATTGAATCCCATATCGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox
IPR002487	TF_Kbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity
GO:0003700	DNA-binding transcription factor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Search form

g.arboreum_cottongen_reftransV1_0013122, g.arboreum_cottongen_reftransV1_0013122 (contig) Gossypium arboreum

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