g.arboreum_cottongen_reftransV1_0015832, g.arboreum_cottongen_reftransV1_0015832 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A022PPK9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006944mg PE=4 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 8.311e-89 Identity = 173/396 (43.69%), Postives = 231/396 (58.33%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVF-DSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPA-------KFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA------------GLEKLAFPVK--AGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDK-LKSSNCNRSGTK-NTILNFFARV 1117 FKMDRYGNGEE+++ KVF ++V S PSF+NFD+ELFTGMCVLAGCDFLPSVPG+GI KA+ V+KYRN+DRV+S+LK +KG +PEDY +FKEA+AVFQHAR+YD+ R+LKH+KPL+ QLLQ ++ LDFLGP + PS+A+AIAEG LDP TMEAFD ++P +F +T+ S Q F + S HKT +KR G + + ++E + A LEKLAFP++ A K + + +PNNNPFKKRK +E+ QL I V + E+ V+E+E I SQESV SK + + + + DK LK C +K ++IL FF+RV Sbjct: 72 FKMDRYGNGEEIIMEKVFKNTVGSVPSFKNFDRELFTGMCVLAGCDFLPSVPGVGIAKAYGFVAKYRNIDRVISMLKFDKGKVVPEDYDTTFKEAVAVFQHARVYDSVSRQLKHLKPLSPQLLQNQNQDLDFLGPDLSPSIAIAIAEGNLDPCTMEAFD-QFLQPGHVSFHRERFSREEKTSTESTQEGSFTIVSRHKTSKKRIRGDIPPHAITDTSELQVNAKAITQEVLHSSEAIALEKLAFPLRNEASKKKKKVPTSFASSNIPNNNPFKKRKQNEI-----------------------QL---------------IREVDVDVDEEASQVTEIENSR---IVTDSQESVDSKLVKNTLLKTAKKGDKLLKRGPCGPVESKTSSILKFFSRV 425
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: K4BM56_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g119070.2 PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 4.583e-87 Identity = 181/407 (44.47%), Postives = 233/407 (57.25%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD-----CNNIEPAK-------FQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-------GLEKLAFPVKAGPKNENMVLEETP------LKVPNNNPFKKRK--------FDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKR-GQNDKLKSSNCNRS-GTKNTILNFFARV 1117 FKMD GNG+E+VL VF + PSFR+F+K+LFTGMCVLAGCDFLPSVPGIGI +A++LVSKYRNLDRVLS+LK EKG QMPEDYTKSF+EA+AVF HARIYD ++ +KH+KP+ E+LLQ+LDE LDFLGP+I PS+A++IA+G +DP TMEAFD N++ A F T S+ +S F + SS K+R++ + T+S + ++ L+ + P + K MV EE LKVP+NNPF+KRK D +TELVS + E LE+ C T P+ SQ+SV SKP + IE KR + K+K SN S KNTILNFF+RV Sbjct: 191 FKMDANGNGQEVVLDHVFSCDTRVPSFRHFNKDLFTGMCVLAGCDFLPSVPGIGITRAYNLVSKYRNLDRVLSMLKFEKGDQMPEDYTKSFREAVAVFYHARIYDVSLKRIKHLKPIPEELLQFLDEELDFLGPEILPSLAMSIAQGNIDPCTMEAFDVFSSKVNHVSTANIKKISGPFSRQEAFTQASKDSSVFAI-SSSKSRKETAVVETTQASGAEQTQSPFMDESECLEEAVALQNIICPSISTRK---MVAEEKKSHRKEVLKVPDNNPFRKRKVEEFEPDEMDSVTELVSELTDVESLEVIC--------TIPE----------------------------------------SQQSVESKPVK-RIELKRVTKEKKVKRSNSQSSENKKNTILNFFSRV 544
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: M0S5V5_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 6.632e-80 Identity = 163/383 (42.56%), Postives = 224/383 (58.49%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD-CNNIEPAKFQNSV-----ETTDNSR----QASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNR-VYIERKRGQNDKLKSSNCNRSG--TKNTILNFF 1108 FKMDRYGNGEE+++ KVF S S SF++FDKEL TGMCVLAGCDFLPS+PGIGI +A+S VSKY+NLDRVLSVL+++K +MPEDY +SF++A+AVF HAR+YD R LKH+KPL E+ L++L+ LD LGP++P SVA A+AEGKL+P TM+ FD N E SV + D R + SC + SS + E+ + + + + + KY K+A L L P + ++ M LE VP+NNPFKKRK E SS+ +D++ ++ + D++ L T+C + SQESV SKPN+ I + + + + K+ N N+S KN IL FF Sbjct: 215 FKMDRYGNGEEILMDKVFKSASDGLSFKDFDKELLTGMCVLAGCDFLPSIPGIGIKRAYSFVSKYKNLDRVLSVLRLDKRYKMPEDYCESFRKAVAVFHHARVYDMATRALKHLKPLEEKHLEFLNGDLDLLGPELPQSVAAAVAEGKLNPITMQHFDYLPNAEMCSESVSVLSYYRTSGDELRISFTEGSCITMCSSEQNHEEHIEDKLIVAR-ETALDQKYIKEAFALGMLVAPAEC---HQVMELEVDKASVPDNNPFKKRKL----EKSSSQKDDQRAALAVVTQDENSLG------------------------------------TVCSSPQSQESVESKPNKSTSIGKDKTRRGRPKTKNENKSAGIKKNGILKFF 553
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: B9IE96_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s04270g PE=4 SV=2) HSP 1 Score: 259.225 bits (661), Expect = 2.727e-77 Identity = 163/349 (46.70%), Postives = 202/349 (57.88%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSK--VFDSVSSKPSFRNFD-KELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEM--------TELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEI-SNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKP 1009 FKMDRYGNGEE+VL K F S + ++ TGMCVLAGCDFLPSVPGIGI KAHS VSKYRNLDRVLSVLK+EKG QMPEDY+KSF EALAVFQHARIYD+ + L+H+KP+ + LL+ L+ LDFLGP+IPPSVA AIAEG LDPTTMEAF C M +KQ +STES Y +A L+KL P K MV + PLKVP NPF+ ++ +E+ T +S + EK+ + DD Q D S ++ S+Q SI Q +V++ E + LC+ SQE+V+S P Sbjct: 191 FKMDRYGNGEEIVLDKSLCFHCRISAIKLKTGSFYDMCTGMCVLAGCDFLPSVPGIGISKAHSYVSKYRNLDRVLSVLKLEKGRQMPEDYSKSFIEALAVFQHARIYDSNNKRLEHMKPVPQNLLESLEGKLDFLGPEIPPSVATAIAEGNLDPTTMEAFAC----------------------------------------MVLKQEPLSTESMYISEALALQKLISPPKVNITETAMVPNDVPLKVP-KNPFRIQQVEEINLDQKDSSTGQISVVIDHEKMNIPWATPDDIQSEVHDKSPPKKRKLNKVHSDQGASITAQASVVTKAENSDNLCV-AESQENVNSMP 497
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: D7KGA7_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_889222 PE=4 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 6.177e-76 Identity = 162/403 (40.20%), Postives = 238/403 (59.06%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTRE----KRKTGTMSMKQVVVSTESKYFK-DAGLEKLAFPVKAGPKNENMVLEET-PLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIF----------------HDDSQ--LTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNC----NRSGT---KNTILNFFARV 1117 FKMDRYG GEEL+L VF +V KPSF+NFD+ELFT MCVLAGCDFLPSVPG+GI +AH+ +SKY++++RVLS LK +KG +P+DY+ SF EA++VFQHARIYD + ++LKH+KPL++ LL L+FLGP + PSVA A+AEG +DP TMEAF+ ++ + Q V + + S F+V SS K+ E KR ++ ++ Y K D+ L KL + P + +V++ + P +P+NNPFK RK DE+ + G E L +S + H+D + +T D L D+G + S + + ++ +EV+ E Q+ V+ RV + R ++ K+K +NC N+ T K++IL+FF R+ Sbjct: 191 FKMDRYGKGEELILDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFLPSVPGVGISRAHAFISKYQSVERVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHARIYDFDAKKLKHLKPLSQNLLNLPVGQLEFLGPDLSPSVAAAVAEGNIDPITMEAFNRFSVPRRQLQKPVRSFKEQEKESSFLVCSSSKSEERIELKRTADEATIYPEATLKKAMYSKQDSDLHKLL----SQPNRDQVVIQPSNPSLIPDNNPFKIRKTDEINLEFAEYGLQE-LAVSFVTKSKAMDVASSSPNSHGHEDREEGVTI-DLPKLEDSGIKQDSAK--NTVKETFETTEVDIAEV-------QDHVNMTTKRVRGAKPRTESFKVK-TNCKSAENKKTTIKKKHSILDFFHRL 577
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_ARATH (Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 4.040e-29 Identity = 62/164 (37.80%), Postives = 99/164 (60.37%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEP 493 FKMD++G+G E SK+ + S F ++ MC+L+GCD+L S+PG+G+ +AH+L++K+++ DRV+ LK S +P Y +SFK AL F+H R+YD ++ H+ +++ L E DF+GP +P +A IA G+LDP T F ++ P Sbjct: 184 FKMDKFGHGVEFQASKL--PKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVS-VPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDN----LGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQAESVTP 340
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_ORYSJ (Exonuclease 1 OS=Oryza sativa subsp. japonica GN=EXO1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.548e-26 Identity = 55/158 (34.81%), Postives = 94/158 (59.49%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475 FKMD++G G E ++++ + F ++ MC+L+GCD+LPS+PG+G+ +AH+L+ K + ++V+ L+ S +P Y ++F++A+ FQ R+YD ++ H+ + E LDFLGP +P +VA IA+G +DP T E F+ Sbjct: 184 FKMDKFGQGVEFHITRL--QRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVS-VPPQYEENFRKAIWAFQFQRVYDPVTEDIVHLSGIPHG----SSEDLDFLGPWLPQTVAKGIAQGNIDPITKEPFE 334
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DICDI (Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.360e-19 Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQL-LQYLDEG------------------------LDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475 FKMD+YG +E+ + F +F++ + MC+L+GCD+LPS+ G+G+ + L+ ++R++++V LK EK S ++Y + F +A F+H R++D R L + PL + ++L++ LDF+GP I +A IA G +DP T E FD Sbjct: 184 FKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKREK-SNFSQEYEQQFYKADFTFKHQRVFDPVSRILTTLLPLPTIIDSRFLNDNNNNTNDGDSNGDGSSGGSGSGGGFLDFIGPVIDDEIAEKIALGIIDPETHEQFD 365
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_XENLA (Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.325e-14 Identity = 58/183 (31.69%), Postives = 91/183 (49.73%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKI----EKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIE-PAKFQNSVETTDNSR 535 KMD++GNG E+ ++ F S F +E F MC+L+GCD+LPS+ GIG+ KA L+ N D + KI + +PE Y + F A F + ++D R+L + P + E L++ GP + SVA+ IA G +D T + D N + P + ++ DN + Sbjct: 184 LKMDKFGNGLEIDQAR-FGMCRSLGDV--FTEEKFRYMCILSGCDYLPSIHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNITVPEGYIEGFLRANNTFLYQLVFDPVERKLIPLNPYGNDV---NPEELNYAGPNMGDSVALQIALGNMDINTRKQIDDYNPDIPQLSHHRSQSWDNKQ 360
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_HUMAN (Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.147e-12 Identity = 67/213 (31.46%), Postives = 95/213 (44.60%), Query Frame = 2 Query: 2 FKMDRYGNGEE-----LVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQM----PEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPA--KFQNSVETTDNSRQASCFVVFSSHKTREKR-KTGTMS 604 KMD++GNG E L + + V F +E F MC+L+GCD+L S+ GIG+ KA ++ N D V + KI +M PEDY F A F + ++D R+L PL E L + G + S+A+ IA G D T E D N + A S D + Q S V H+ R ++GT+S Sbjct: 184 LKMDQFGNGLEIDQARLGMCRQLGDV--------FTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKL---IPLNAYEDDVDPETLSYAGQYVDDSIALQIALGNKDINTFEQIDDYNPDTAMPAHSRSHSWDDKTCQKSANVSSIWHRNYSPRPESGTVS 385
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_MOUSE (Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.704e-12 Identity = 57/167 (34.13%), Postives = 77/167 (46.11%), Query Frame = 2 Query: 2 FKMDRYGNGEE-----LVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQM----PEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475 KMD++GNG E L + K V F +E F MC+L+GCD+L S+ GIG+ KA ++ N D V + KI +M PEDY F A F + ++D R+L PL E L + G + SVA+ IA G D T E D Sbjct: 184 LKMDQFGNGLEVDQARLGMCKQLGDV--------FTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDYITGFIRANNTFLYQLVFDPIQRKL---VPLNAYGDDVNPETLTYAGQYVGDSVALQIALGNRDVNTFEQID 339
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_SCHPO (Exodeoxyribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=exo1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.280e-11 Identity = 48/174 (27.59%), Postives = 84/174 (48.28%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETT 523 FKMD +GN + + D +++ E M + +GCD+ V G+G+ A + KY + ++++K ++P + K F A F+H R+Y + + L H+ P +L + D F+G +A+ IAEG+ +P T AFD I+ + Q+ +TT Sbjct: 184 FKMDGFGN---CITIRRNDIANAQDLNLRLPIEKLRHMAIFSGCDYTDGVAGMGLKTALRYLQKYPEPRAAIRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCPKDKTLVHLSPPERELSVHEDA---FIGSFFDNQLAIDIAEGRSNPITKCAFD---IKDSSMQSFTKTT 348
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DROME (Exonuclease 1 OS=Drosophila melanogaster GN=tos PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.209e-11 Identity = 57/204 (27.94%), Postives = 97/204 (47.55%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIE-----KGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLT--EQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVV-FSSHKTREKRK 589 FK+D G+G + K+ ++ +FDK F MC+L+GCD+L S+PGIG+ KA + K D +++ KI + ++ +DY ++F +A A F+H IY+ R ++ + L E +Y L A+ +A G L+P +M+ D + P K + + S+ S + F S T +K Sbjct: 184 FKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDK--FRRMCILSGCDYLDSLPGIGLAKACKFILKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCALEDYETDERYCSNAGTLLEDS---EQALHLALGNLNPFSMKRLD--SWTPEKAWPTPKNVKRSKHKSIWQTNFQSENTHTPKK 380
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DANRE (Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 3.210e-10 Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 2 Query: 2 FKMDRYGNGEELVLSKVFDSVSSKPSFRN-FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLK-----IEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475 KMD+ GNG E+ + S N F +E F MC+L+GCD+L S+ GIG+ KA L+ N D +L V+K ++ +PE+Y + F +A F + ++D R++ + P + + L + G + + +A G LD TM+ D Sbjct: 184 LKMDKQGNGLEIEQCHL----GRCKSLGNIFTEEKFRYMCILSGCDYLQSLYGIGLGKACKLLRMANNPD-ILKVIKKMGQYLKMDISVPEEYIEGFTKANNTFLYQLVFDPLRRKVVPLNPYPDHI---NPAALSYAGTNVGDEKGLQMALGNLDINTMQRID 339
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: FEN1_CANTT (Flap endonuclease 1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RAD27 PE=3 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 1.296e-8 Identity = 36/119 (30.25%), Postives = 66/119 (55.46%), Query Frame = 2 Query: 53 FDSVSSKPSFRNFD--KELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGS---QMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDF 394 D +S K + D KE F +C+L GCD+ ++ G+G V A+ L+ ++ +L++++ IEKG+ +PE++ + EA +F + + A LK +P E L++Y+ +G F Sbjct: 205 IDEISYKEAMAGLDMNKEQFVDLCILLGCDYCETIRGVGPVTAYKLIKEHGSLEKIVEW--IEKGNTKYTVPENW--PYAEARELFLNPEVKKASDISLKWKEPDVEGLIEYMVKGKGF 319 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015832 ID=g.arboreum_cottongen_reftransV1_0015832; Name=g.arboreum_cottongen_reftransV1_0015832; organism=Gossypium arboreum; type=contig; length=1195bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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