g.arboreum_cottongen_reftransV1_0015832, g.arboreum_cottongen_reftransV1_0015832 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015832
Unique Nameg.arboreum_cottongen_reftransV1_0015832
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1195
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0015832:1..1195 .
Chr11:69013336..69016350 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A022PPK9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006944mg PE=4 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 8.311e-89
Identity = 173/396 (43.69%), Postives = 231/396 (58.33%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVF-DSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPA-------KFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA------------GLEKLAFPVK--AGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDK-LKSSNCNRSGTK-NTILNFFARV 1117
            FKMDRYGNGEE+++ KVF ++V S PSF+NFD+ELFTGMCVLAGCDFLPSVPG+GI KA+  V+KYRN+DRV+S+LK +KG  +PEDY  +FKEA+AVFQHAR+YD+  R+LKH+KPL+ QLLQ  ++ LDFLGP + PS+A+AIAEG LDP TMEAFD   ++P        +F    +T+  S Q   F + S HKT +KR  G +    +  ++E +    A             LEKLAFP++  A  K + +        +PNNNPFKKRK +E+                       QL               I    V + E+   V+E+E      I   SQESV SK  +  + +   + DK LK   C    +K ++IL FF+RV
Sbjct:   72 FKMDRYGNGEEIIMEKVFKNTVGSVPSFKNFDRELFTGMCVLAGCDFLPSVPGVGIAKAYGFVAKYRNIDRVISMLKFDKGKVVPEDYDTTFKEAVAVFQHARVYDSVSRQLKHLKPLSPQLLQNQNQDLDFLGPDLSPSIAIAIAEGNLDPCTMEAFD-QFLQPGHVSFHRERFSREEKTSTESTQEGSFTIVSRHKTSKKRIRGDIPPHAITDTSELQVNAKAITQEVLHSSEAIALEKLAFPLRNEASKKKKKVPTSFASSNIPNNNPFKKRKQNEI-----------------------QL---------------IREVDVDVDEEASQVTEIENSR---IVTDSQESVDSKLVKNTLLKTAKKGDKLLKRGPCGPVESKTSSILKFFSRV 425          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: K4BM56_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g119070.2 PE=4 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 4.583e-87
Identity = 181/407 (44.47%), Postives = 233/407 (57.25%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD-----CNNIEPAK-------FQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-------GLEKLAFPVKAGPKNENMVLEETP------LKVPNNNPFKKRK--------FDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKR-GQNDKLKSSNCNRS-GTKNTILNFFARV 1117
            FKMD  GNG+E+VL  VF   +  PSFR+F+K+LFTGMCVLAGCDFLPSVPGIGI +A++LVSKYRNLDRVLS+LK EKG QMPEDYTKSF+EA+AVF HARIYD  ++ +KH+KP+ E+LLQ+LDE LDFLGP+I PS+A++IA+G +DP TMEAFD      N++  A        F      T  S+ +S F + SS K+R++      +       T+S +  ++        L+ +  P  +  K   MV EE        LKVP+NNPF+KRK         D +TELVS   + E LE+ C        T P+                                        SQ+SV SKP +  IE KR  +  K+K SN   S   KNTILNFF+RV
Sbjct:  191 FKMDANGNGQEVVLDHVFSCDTRVPSFRHFNKDLFTGMCVLAGCDFLPSVPGIGITRAYNLVSKYRNLDRVLSMLKFEKGDQMPEDYTKSFREAVAVFYHARIYDVSLKRIKHLKPIPEELLQFLDEELDFLGPEILPSLAMSIAQGNIDPCTMEAFDVFSSKVNHVSTANIKKISGPFSRQEAFTQASKDSSVFAI-SSSKSRKETAVVETTQASGAEQTQSPFMDESECLEEAVALQNIICPSISTRK---MVAEEKKSHRKEVLKVPDNNPFRKRKVEEFEPDEMDSVTELVSELTDVESLEVIC--------TIPE----------------------------------------SQQSVESKPVK-RIELKRVTKEKKVKRSNSQSSENKKNTILNFFSRV 544          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: M0S5V5_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 6.632e-80
Identity = 163/383 (42.56%), Postives = 224/383 (58.49%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD-CNNIEPAKFQNSV-----ETTDNSR----QASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNR-VYIERKRGQNDKLKSSNCNRSG--TKNTILNFF 1108
            FKMDRYGNGEE+++ KVF S S   SF++FDKEL TGMCVLAGCDFLPS+PGIGI +A+S VSKY+NLDRVLSVL+++K  +MPEDY +SF++A+AVF HAR+YD   R LKH+KPL E+ L++L+  LD LGP++P SVA A+AEGKL+P TM+ FD   N E      SV      + D  R    + SC  + SS +  E+     + + +   + + KY K+A  L  L  P +    ++ M LE     VP+NNPFKKRK     E  SS+ +D++  ++ +  D++ L                                     T+C +  SQESV SKPN+   I + + +  + K+ N N+S    KN IL FF
Sbjct:  215 FKMDRYGNGEEILMDKVFKSASDGLSFKDFDKELLTGMCVLAGCDFLPSIPGIGIKRAYSFVSKYKNLDRVLSVLRLDKRYKMPEDYCESFRKAVAVFHHARVYDMATRALKHLKPLEEKHLEFLNGDLDLLGPELPQSVAAAVAEGKLNPITMQHFDYLPNAEMCSESVSVLSYYRTSGDELRISFTEGSCITMCSSEQNHEEHIEDKLIVAR-ETALDQKYIKEAFALGMLVAPAEC---HQVMELEVDKASVPDNNPFKKRKL----EKSSSQKDDQRAALAVVTQDENSLG------------------------------------TVCSSPQSQESVESKPNKSTSIGKDKTRRGRPKTKNENKSAGIKKNGILKFF 553          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: B9IE96_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s04270g PE=4 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 2.727e-77
Identity = 163/349 (46.70%), Postives = 202/349 (57.88%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSK--VFDSVSSKPSFRNFD-KELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEM--------TELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEI-SNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKP 1009
            FKMDRYGNGEE+VL K   F    S    +     ++ TGMCVLAGCDFLPSVPGIGI KAHS VSKYRNLDRVLSVLK+EKG QMPEDY+KSF EALAVFQHARIYD+  + L+H+KP+ + LL+ L+  LDFLGP+IPPSVA AIAEG LDPTTMEAF C                                        M +KQ  +STES Y  +A  L+KL  P K       MV  + PLKVP  NPF+ ++ +E+        T  +S   + EK+ +     DD Q    D S        ++ S+Q  SI  Q  +V++ E  + LC+   SQE+V+S P
Sbjct:  191 FKMDRYGNGEEIVLDKSLCFHCRISAIKLKTGSFYDMCTGMCVLAGCDFLPSVPGIGISKAHSYVSKYRNLDRVLSVLKLEKGRQMPEDYSKSFIEALAVFQHARIYDSNNKRLEHMKPVPQNLLESLEGKLDFLGPEIPPSVATAIAEGNLDPTTMEAFAC----------------------------------------MVLKQEPLSTESMYISEALALQKLISPPKVNITETAMVPNDVPLKVP-KNPFRIQQVEEINLDQKDSSTGQISVVIDHEKMNIPWATPDDIQSEVHDKSPPKKRKLNKVHSDQGASITAQASVVTKAENSDNLCV-AESQENVNSMP 497          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: D7KGA7_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_889222 PE=4 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 6.177e-76
Identity = 162/403 (40.20%), Postives = 238/403 (59.06%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTRE----KRKTGTMSMKQVVVSTESKYFK-DAGLEKLAFPVKAGPKNENMVLEET-PLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIF----------------HDDSQ--LTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNC----NRSGT---KNTILNFFARV 1117
            FKMDRYG GEEL+L  VF +V  KPSF+NFD+ELFT MCVLAGCDFLPSVPG+GI +AH+ +SKY++++RVLS LK +KG  +P+DY+ SF EA++VFQHARIYD + ++LKH+KPL++ LL      L+FLGP + PSVA A+AEG +DP TMEAF+  ++   + Q  V +     + S F+V SS K+ E    KR     ++       ++ Y K D+ L KL     + P  + +V++ + P  +P+NNPFK RK DE+    +  G  E L +S +                 H+D +  +T  D   L D+G  + S +  +  ++    +EV+  E        Q+ V+    RV   + R ++ K+K +NC    N+  T   K++IL+FF R+
Sbjct:  191 FKMDRYGKGEELILDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFLPSVPGVGISRAHAFISKYQSVERVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHARIYDFDAKKLKHLKPLSQNLLNLPVGQLEFLGPDLSPSVAAAVAEGNIDPITMEAFNRFSVPRRQLQKPVRSFKEQEKESSFLVCSSSKSEERIELKRTADEATIYPEATLKKAMYSKQDSDLHKLL----SQPNRDQVVIQPSNPSLIPDNNPFKIRKTDEINLEFAEYGLQE-LAVSFVTKSKAMDVASSSPNSHGHEDREEGVTI-DLPKLEDSGIKQDSAK--NTVKETFETTEVDIAEV-------QDHVNMTTKRVRGAKPRTESFKVK-TNCKSAENKKTTIKKKHSILDFFHRL 577          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_ARATH (Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 4.040e-29
Identity = 62/164 (37.80%), Postives = 99/164 (60.37%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEP 493
            FKMD++G+G E   SK+    +   S   F  ++   MC+L+GCD+L S+PG+G+ +AH+L++K+++ DRV+  LK    S +P  Y +SFK AL  F+H R+YD    ++ H+  +++     L E  DF+GP +P  +A  IA G+LDP T   F   ++ P
Sbjct:  184 FKMDKFGHGVEFQASKL--PKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVS-VPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDN----LGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQAESVTP 340          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_ORYSJ (Exonuclease 1 OS=Oryza sativa subsp. japonica GN=EXO1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.548e-26
Identity = 55/158 (34.81%), Postives = 94/158 (59.49%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
            FKMD++G G E  ++++      +     F  ++   MC+L+GCD+LPS+PG+G+ +AH+L+ K +  ++V+  L+    S +P  Y ++F++A+  FQ  R+YD    ++ H+  +         E LDFLGP +P +VA  IA+G +DP T E F+
Sbjct:  184 FKMDKFGQGVEFHITRL--QRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVS-VPPQYEENFRKAIWAFQFQRVYDPVTEDIVHLSGIPHG----SSEDLDFLGPWLPQTVAKGIAQGNIDPITKEPFE 334          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DICDI (Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.360e-19
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQL-LQYLDEG------------------------LDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
            FKMD+YG  +E+    +         F +F++ +   MC+L+GCD+LPS+ G+G+  +  L+ ++R++++V   LK EK S   ++Y + F +A   F+H R++D   R L  + PL   +  ++L++                         LDF+GP I   +A  IA G +DP T E FD
Sbjct:  184 FKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKREK-SNFSQEYEQQFYKADFTFKHQRVFDPVSRILTTLLPLPTIIDSRFLNDNNNNTNDGDSNGDGSSGGSGSGGGFLDFIGPVIDDEIAEKIALGIIDPETHEQFD 365          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_XENLA (Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.325e-14
Identity = 58/183 (31.69%), Postives = 91/183 (49.73%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKI----EKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIE-PAKFQNSVETTDNSR 535
             KMD++GNG E+  ++ F    S      F +E F  MC+L+GCD+LPS+ GIG+ KA  L+    N D    + KI    +    +PE Y + F  A   F +  ++D   R+L  + P    +     E L++ GP +  SVA+ IA G +D  T +  D  N + P    +  ++ DN +
Sbjct:  184 LKMDKFGNGLEIDQAR-FGMCRSLGDV--FTEEKFRYMCILSGCDYLPSIHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNITVPEGYIEGFLRANNTFLYQLVFDPVERKLIPLNPYGNDV---NPEELNYAGPNMGDSVALQIALGNMDINTRKQIDDYNPDIPQLSHHRSQSWDNKQ 360          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_HUMAN (Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.147e-12
Identity = 67/213 (31.46%), Postives = 95/213 (44.60%), Query Frame = 2
Query:    2 FKMDRYGNGEE-----LVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQM----PEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPA--KFQNSVETTDNSRQASCFVVFSSHKTREKR-KTGTMS 604
             KMD++GNG E     L + +    V        F +E F  MC+L+GCD+L S+ GIG+ KA  ++    N D V  + KI    +M    PEDY   F  A   F +  ++D   R+L    PL         E L + G  +  S+A+ IA G  D  T E  D  N + A      S    D + Q S  V    H+    R ++GT+S
Sbjct:  184 LKMDQFGNGLEIDQARLGMCRQLGDV--------FTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKL---IPLNAYEDDVDPETLSYAGQYVDDSIALQIALGNKDINTFEQIDDYNPDTAMPAHSRSHSWDDKTCQKSANVSSIWHRNYSPRPESGTVS 385          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_MOUSE (Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.704e-12
Identity = 57/167 (34.13%), Postives = 77/167 (46.11%), Query Frame = 2
Query:    2 FKMDRYGNGEE-----LVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQM----PEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
             KMD++GNG E     L + K    V        F +E F  MC+L+GCD+L S+ GIG+ KA  ++    N D V  + KI    +M    PEDY   F  A   F +  ++D   R+L    PL         E L + G  +  SVA+ IA G  D  T E  D
Sbjct:  184 LKMDQFGNGLEVDQARLGMCKQLGDV--------FTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDYITGFIRANNTFLYQLVFDPIQRKL---VPLNAYGDDVNPETLTYAGQYVGDSVALQIALGNRDVNTFEQID 339          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_SCHPO (Exodeoxyribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=exo1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.280e-11
Identity = 48/174 (27.59%), Postives = 84/174 (48.28%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETT 523
            FKMD +GN    +  +  D  +++        E    M + +GCD+   V G+G+  A   + KY      +  ++++K  ++P  + K F  A   F+H R+Y  + + L H+ P   +L  + D    F+G      +A+ IAEG+ +P T  AFD   I+ +  Q+  +TT
Sbjct:  184 FKMDGFGN---CITIRRNDIANAQDLNLRLPIEKLRHMAIFSGCDYTDGVAGMGLKTALRYLQKYPEPRAAIRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCPKDKTLVHLSPPERELSVHEDA---FIGSFFDNQLAIDIAEGRSNPITKCAFD---IKDSSMQSFTKTT 348          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DROME (Exonuclease 1 OS=Drosophila melanogaster GN=tos PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.209e-11
Identity = 57/204 (27.94%), Postives = 97/204 (47.55%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIE-----KGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLT--EQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVV-FSSHKTREKRK 589
            FK+D  G+G  +   K+  ++       +FDK  F  MC+L+GCD+L S+PGIG+ KA   + K    D  +++ KI      +  ++ +DY ++F +A A F+H  IY+   R ++ +  L   E   +Y       L        A+ +A G L+P +M+  D  +  P K   + +    S+  S +   F S  T   +K
Sbjct:  184 FKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDK--FRRMCILSGCDYLDSLPGIGLAKACKFILKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCALEDYETDERYCSNAGTLLEDS---EQALHLALGNLNPFSMKRLD--SWTPEKAWPTPKNVKRSKHKSIWQTNFQSENTHTPKK 380          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DANRE (Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.210e-10
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRN-FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLK-----IEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
             KMD+ GNG E+    +        S  N F +E F  MC+L+GCD+L S+ GIG+ KA  L+    N D +L V+K     ++    +PE+Y + F +A   F +  ++D   R++  + P  + +       L + G  +     + +A G LD  TM+  D
Sbjct:  184 LKMDKQGNGLEIEQCHL----GRCKSLGNIFTEEKFRYMCILSGCDYLQSLYGIGLGKACKLLRMANNPD-ILKVIKKMGQYLKMDISVPEEYIEGFTKANNTFLYQLVFDPLRRKVVPLNPYPDHI---NPAALSYAGTNVGDEKGLQMALGNLDINTMQRID 339          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: FEN1_CANTT (Flap endonuclease 1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RAD27 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.296e-8
Identity = 36/119 (30.25%), Postives = 66/119 (55.46%), Query Frame = 2
Query:   53 FDSVSSKPSFRNFD--KELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGS---QMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDF 394
             D +S K +    D  KE F  +C+L GCD+  ++ G+G V A+ L+ ++ +L++++    IEKG+    +PE++   + EA  +F +  +  A    LK  +P  E L++Y+ +G  F
Sbjct:  205 IDEISYKEAMAGLDMNKEQFVDLCILLGCDYCETIRGVGPVTAYKLIKEHGSLEKIVEW--IEKGNTKYTVPENW--PYAEARELFLNPEVKKASDISLKWKEPDVEGLIEYMVKGKGF 319          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A022PPK9_ERYGU8.311e-8943.69Uncharacterized protein OS=Erythranthe guttata GN=... [more]
K4BM56_SOLLC4.583e-8744.47Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M0S5V5_MUSAM6.632e-8042.56Uncharacterized protein OS=Musa acuminata subsp. m... [more]
B9IE96_POPTR2.727e-7746.70Uncharacterized protein (Fragment) OS=Populus tric... [more]
D7KGA7_ARALL6.177e-7640.20Putative uncharacterized protein OS=Arabidopsis ly... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EXO1_ARATH4.040e-2937.80Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2... [more]
EXO1_ORYSJ2.548e-2634.81Exonuclease 1 OS=Oryza sativa subsp. japonica GN=E... [more]
EXO1_DICDI2.360e-1930.60Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 ... [more]
EXO1_XENLA1.325e-1431.69Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1[more]
EXO1_HUMAN1.147e-1231.46Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2[more]
EXO1_MOUSE1.704e-1234.13Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2[more]
EXO1_SCHPO1.280e-1127.59Exodeoxyribonuclease 1 OS=Schizosaccharomyces pomb... [more]
EXO1_DROME4.209e-1127.94Exonuclease 1 OS=Drosophila melanogaster GN=tos PE... [more]
EXO1_DANRE3.210e-1029.88Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1[more]
FEN1_CANTT1.296e-830.25Flap endonuclease 1 OS=Candida tropicalis (strain ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008918Helix-hairpin-helix motif, class 2SMARTSM00279HhH_4coord: 30..63
e-value: 6.1E-4
score: 29.1
NoneNo IPR availableGENE3D1.10.150.20coord: 29..92
e-value: 1.6E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR11081:SF275'-3' EXONUCLEASE FAMILY PROTEINcoord: 1..255
NoneNo IPR availablePANTHERPTHR11081:SF275'-3' EXONUCLEASE FAMILY PROTEINcoord: 296..370
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 296..370
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 1..255
IPR0200455'-3' exonuclease, C-terminal domainSUPERFAMILY478075' to 3' exonuclease, C-terminal subdomaincoord: 29..156

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015832 ID=g.arboreum_cottongen_reftransV1_0015832; Name=g.arboreum_cottongen_reftransV1_0015832; organism=Gossypium arboreum; type=contig; length=1195bp
ATTTAAAATGGACCGTTATGGCAATGGAGAAGAACTGGTTCTGTCAAAAG
TTTTTGATTCTGTATCCAGTAAACCTTCCTTCAGAAATTTTGATAAAGAA
TTGTTTACAGGTATGTGTGTCCTAGCTGGATGTGATTTCCTTCCATCGGT
TCCTGGAATTGGTATTGTAAAGGCACATTCCTTAGTTTCCAAGTATCGGA
ACTTAGACCGTGTTTTATCAGTTTTGAAGATTGAGAAGGGCAGTCAGATG
CCAGAAGATTACACCAAATCGTTCAAAGAAGCACTTGCAGTTTTTCAGCA
TGCCAGAATATATGATGCTGAAATCAGGGAGCTGAAACATATTAAACCTC
TTACAGAACAACTTCTGCAATATCTAGATGAAGGGCTTGATTTCCTGGGA
CCAAAAATCCCTCCATCAGTGGCAGTTGCGATTGCTGAAGGAAAGTTAGA
CCCCACTACAATGGAAGCCTTTGACTGTAATAATATAGAGCCTGCTAAGT
TTCAAAATTCTGTTGAAACTACTGATAATTCCAGACAAGCAAGCTGCTTC
GTGGTATTTTCTTCACATAAAACCAGAGAAAAAAGGAAGACAGGTACAAT
GAGCATGAAGCAAGTTGTAGTTTCAACTGAAAGCAAGTATTTTAAAGATG
CTGGATTGGAAAAATTAGCATTTCCAGTAAAAGCTGGTCCGAAAAATGAG
AATATGGTTTTAGAGGAAACTCCATTGAAGGTTCCAAATAATAACCCTTT
CAAGAAGAGAAAATTTGATGAAATGACTGAACTAGTTTCATCAAAAGGCG
AAGATGAGAAGTTGGAAATGTCATGTATTTTTCATGATGATAGTCAATTG
ACATTTCCTGACAATAGTAGTTTAAGTGATGCCGGGAAACTTGAAATCTC
TAATCAGATAGTTAGCATTGCTGAACAAATTTTAATGGTGAGTGAGGTAG
AATGTTGTGAGACCTTGTGCATCAATATGGGATCCCAAGAAAGTGTCAGC
TCTAAGCCAAACAGAGTGTACATTGAAAGAAAAAGAGGTCAAAATGACAA
GCTGAAGAGCAGTAATTGCAACAGGTCAGGGACTAAGAACACTATTTTGA
ACTTCTTTGCTCGTGTGTGATCATCCTATCTGTTTAATTCAAACAACTGA
TGCCACATTGACATCTGTACTGTTTAACCTTTATACTAGTTGGAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR008918HhH2
IPR006084XPG/Rad2
IPR020045DNA_polI_H3TH
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003824catalytic activity
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair