g.arboreum_cottongen_reftransV1_0015832, g.arboreum_cottongen_reftransV1_0015832 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015832
Unique Nameg.arboreum_cottongen_reftransV1_0015832
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1195
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0015832:1..1195 .
Chr11:69013336..69016350 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: B9SU84_RICCO (Exonuclease, putative OS=Ricinus communis GN=RCOM_0570820 PE=4 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.822e-107
Identity = 209/394 (53.05%), Postives = 265/394 (67.26%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAF------DCNNIEPAKFQN-----SVETTDNSRQASCFVVFSSHKTREKRKTG------TMSMKQVVVSTESKYFKDA-GLEKLAFPVKAGPKNEN-MVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEIS-NQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSG--TKNTILNFFARV 1117
            FKMDR+GNGEE+VL KV+++V+ KPSF++FD+ELFTGMCVLAGCDFLPSVPGIGIVKAHS V KYRNLDRVLSVLK+EKG+QMPEDY+KSF+EALAVFQHARIYDA  R+L H+KPL++ LL  LDE LDFLGP++P SVA+AIAEG L+PT MEAF      +C++ +P   QN      +E    SRQ + FV  S+ KT +K  TG      ++ MKQ  V TE KY  +A  L+KL  P +   K E  MVL++ PLK+P NNPF  +   E    VS   + E+    C   D +     DNS        EI  +Q  S+ +Q   V+E E  E L +   SQESV+SKP ++   ++RG+N+K KSS  +RSG   +NTILNFF+ V
Sbjct:  191 FKMDRFGNGEEIVLDKVYNAVACKPSFQHFDRELFTGMCVLAGCDFLPSVPGIGIVKAHSFVVKYRNLDRVLSVLKLEKGNQMPEDYSKSFREALAVFQHARIYDATTRKLIHLKPLSQNLLDSLDEKLDFLGPELPSSVAIAIAEGNLNPTNMEAFNIFPSSECHH-DPIVIQNPFEQQKLEDAVMSRQKNSFVARST-KTAKKDVTGKLFSPLSIVMKQDPVITERKYVNEALALQKLVLPQEIHLKVEKEMVLQDIPLKIP-NNPFMIKSSPESVLDVS---DYERSNTLCSTPDSNPQKVADNSFCKKRKINEIDLHQKESMDDQTSEVTE-EISEILFVAKESQESVNSKPIKIPEVKRRGKNEKTKSSK-HRSGESKQNTILNFFSPV 576          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: M5WYY2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020678mg PE=4 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 4.165e-106
Identity = 201/398 (50.50%), Postives = 258/398 (64.82%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDC-----NNIEPAKFQN-----SVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKD-AGLEKLAFPVKAGPKNENMVLEET------PLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDN---SSLSDAGKLEISNQIV-----SIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKN-TILNFFARV 1117
            FKMD+YGNGEE+VL  VF+ V   PSF+NFD+ELFTGMCVLAGCDFLPSV GIGI KA++LVSKYRNLDR LSVLK +KG+QMPEDY K FKEA+AVFQHA+I+DAE +++KH+K + E L+Q LD  LDFLGP++PPSVA AIAEG LDP  M+AFD      ++ EP K QN       ET   + + SCFV F SHK+R K  TG    KQ  VS E+KY  + A L KL       P   N+ LE T      PLKV +NNPFKKRK D  ++ + SK +    E      D   ++ P N     +++    +  N I+     SI E++ +V+E+E  + LC+   SQESV+SK  +    ++  +N+KLK S+   SG KN +ILNFF+RV
Sbjct:  189 FKMDQYGNGEEMVLENVFNPVGRTPSFQNFDQELFTGMCVLAGCDFLPSVHGIGIAKAYALVSKYRNLDRALSVLKSQKGNQMPEDYPKCFKEAVAVFQHAQIFDAEKKKVKHMKAIPENLVQSLDGELDFLGPEMPPSVATAIAEGNLDPINMKAFDHFPASRHHQEPIKSQNIGQIQRPETAVVAAEDSCFVSFPSHKSRRKDSTGPTG-KQNPVSNENKYLNESAALAKLIV-----PSTNNVTLESTIAPNTIPLKVRHNNPFKKRKDDVHSDQMGSKTKQVSSEAEVEISDTLNVS-PSNIKTKVVNNVPSRKRKNDIILEHVESIGEEVSVVTEIESTDILCVTPESQESVNSKLPK---GKRIVKNEKLKRSSFKSSGNKNSSILNFFSRV 576          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A067L1M9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03614 PE=4 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 8.940e-105
Identity = 200/387 (51.68%), Postives = 247/387 (63.82%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD------CNNIEPAKFQNSV-----ETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPVKAGPKNENMVL-EETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEIS-NQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTK-NTILNFFARV 1117
            FKMDRYGNGEE+VL KVFD+ + KPSF+ F+KELF GMCVLAGCDFLPSVPGIGIVKAHS VSKYRNLDRVLSVLK+EKGSQMPEDY+KSFKEALAVFQHARIYDAE ++L+H+KPL + LL  LD  LDFLGP++PPSVA AIAEG L+P+ MEAFD      C   +P   QN       E+T  SR+  CF+  SS           M+M +  V TE KY  +A  L+KL  P +     E +VL +E PLK+P NNPF        TE  S   E++   + C   D        NS      ++EI  +Q  S  EQ   V +VE    + +   SQESV+S+P ++   + R + +K K  +C  +  K NTILNFF+RV
Sbjct:  191 FKMDRYGNGEEMVLDKVFDAGACKPSFKYFNKELFIGMCVLAGCDFLPSVPGIGIVKAHSYVSKYRNLDRVLSVLKLEKGSQMPEDYSKSFKEALAVFQHARIYDAETKKLRHMKPLPQNLLDSLDGQLDFLGPELPPSVATAIAEGNLNPSNMEAFDYFPSSECQP-DPIVIQNPCMLQKDESTVVSRRKGCFISISSR----------MAMNEDPVVTERKYINEAITLQKLIMPQEILSSTEKVVLPDEAPLKIP-NNPF---AIKSTTEARSVVLENDNSNLLCSTPDRDPSNDSGNSPSKKRKQIEIDLHQKESTDEQASEVIDVE----MYVTKESQESVNSRPRKISNRKVRSKFEKPKKCDCKTADNKQNTILNFFSRV 558          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A059D0K1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00858 PE=4 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.022e-96
Identity = 188/394 (47.72%), Postives = 243/394 (61.68%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCN---------NIEPAKFQ-NSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAG-LEKLAFPVK-AGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKL--------EISNQIV-SIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRG-QNDKLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEE++L KVFDS +S PSF+NFD  LFTGMCVLAGCDFLPSVPGIGI KA+SLVSKYRN+DR LSVLK+EKG+QMPE Y+K F EA+AVFQHARIYD   ++L+H++PL+E+LLQ LD  LDFLGP +PPS+A+AIAEG++DP+ MEAFD +         +I PA  Q    E T  S +  CF V  S+   E  K    +MK+ +   E K+  +A  L +L  P + +G      V E   +K+PNNNPFK RK  ++      K  DE   +  +   DS     +  SL  + K         +I N +         +++EV      C  + SQESV+S PN    E K+  Q  K+K SNC  S  + TILN+F+RV
Sbjct:  191 FKMDRYGNGEEMLLQKVFDSTTSTPSFKNFDMALFTGMCVLAGCDFLPSVPGIGIKKAYSLVSKYRNIDRALSVLKLEKGNQMPEYYSKIFHEAVAVFQHARIYDTITKKLRHMRPLSEKLLQALDGELDFLGPDVPPSIAIAIAEGRVDPSNMEAFDTHQTSGCHVPIDIIPASRQLWQDEATALSAEKDCFFVNISN---EYMKADFTAMKEELNLQERKFSNEAAVLSRLMLPPETSGDVGSVAVSESMSVKIPNNNPFKIRKVGKIHLSPVKKSSDEVSLLIDVEELDSLSPSSNEVSLDMSEKNRYMKRKWDQIGNDLKDGDTGHRSVLTEVGNSGIFCSALASQESVTSTPNFNTSENKQARQTKKVKRSNCKGSENRTTILNYFSRV 581          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A068TR00_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_2 OS=Coffea canephora GN=GSCOC_T00022451001 PE=4 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.086e-94
Identity = 176/386 (45.60%), Postives = 228/386 (59.07%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAF---------DCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPVKAGPKNENMVL--EETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKL--KSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNG+E++L KV  S    PSFRNFDK LFTGMCVLAGCDFLPS+PGIGIVKAHSLVSKYRNLDRVLSVLK EKGSQ+PE Y+KSF+EA+AVF HA IYDA +++LKH+KP+ E LL+  DE LDFLGP++P S+A AIAEG L+P TMEAF         +  N+         E    S +  CF   +S K+R+  K G  S          K+   A  LEKL  P+    + E++++  +E P K+P NNPFKKR  +++                 + H +S +                        +Q+ +++E E  E L     SQ+SV SKP +   E      +K   +SSNC+ S  K++ILNFF+RV
Sbjct:  191 FKMDRYGNGQEIILDKVLGSSDRVPSFRNFDKNLFTGMCVLAGCDFLPSIPGIGIVKAHSLVSKYRNLDRVLSVLKFEKGSQVPEQYSKSFREAVAVFHHAHIYDAALKQLKHMKPIPEDLLKSFDEELDFLGPEMPQSIATAIAEGNLNPCTMEAFSYFPSSSQANSTNLVRCDRLKKQEKRSLSSEDGCFAAVTSCKSRKDEKRGKFSASHAPFVVGRKHIDGAVELEKLKLPLMNDCEEESIIIIQKEVP-KLPENNPFKKRNMEDI----------------LLKHTESTI------------------------KQVSVLTETESSEMLYPTPDSQQSVDSKPVKTTEEDTSVHREKKMKRSSNCHSSVQKSSILNFFSRV 535          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: V7C719_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G151700g PE=4 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 3.053e-92
Identity = 181/402 (45.02%), Postives = 243/402 (60.45%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD---CNN--IEPAKFQN-----SVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPVKA-GPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDN-------SSLSDAGKLE--ISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRV---------YIERKRGQNDKLKSSNCNRSGTKNTILNFFARV 1117
            FKMDR+GNGE++ L KVF + S KPSFR+F+KELFTGMCVLAGCDFLPSVPGIGI +AH+LVSKYRNLDR+LSVLK+EK  QMPEDY K+F+EA+AVFQHARIYD   +ELKH+KPL +  L+ LD  LDFLGP+IPPS+   IAEG L+P+T +AFD   C+   + P   Q+       E    SR  + F + +S  TRE      +         E KY  +A  LEKL  P++  G + + ++ + TPLKVP+NNPF+ RK +E  +   +K   EK+ +          T PDN        + S   K +  +S+++ +  + +  V+E E C+ +C+   S ESV+S    +           +  R  N K   SN NR     T+LNFF+RV
Sbjct:  191 FKMDRHGNGEKIELEKVFSAESGKPSFRSFNKELFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKLEKADQMPEDYAKTFQEAVAVFQHARIYDTNAKELKHMKPLPQNFLESLDGKLDFLGPQIPPSIVKGIAEGNLNPSTKKAFDKSECSRFPLHPTDLQSFDQIQKAEVPAPSRLKNSFSIIASQYTRENSTVTRL-------LDEEKYSNEALALEKLIKPLETIGTEEKTIISDNTPLKVPDNNPFRIRKNEERYQ---TKDTIEKIVVESSMEYIDLCTSPDNFQKEGSDENHSRKRKFQNILSDKVEASEDLVSGVTEAEKCDVVCLT-ESPESVTSGTKMIAHLKGKSESKKKSNRRSNSKKTGSNTNR-----TLLNFFSRV 576          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0A0LVU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042690 PE=4 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.020e-91
Identity = 190/393 (48.35%), Postives = 246/393 (62.60%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAF------DCNN---IEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNE-NMVLEETPLKVPNNNPFKKRKFDEMT--------ELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKR--GQNDKLKSSNCNRSGT-KNTILNFFARV 1117
            FKMDRYGNGEE++L K+FDS    PSF++FDKEL TGMCVLAGCDFLPSVPGIGI +A++LVSKYRNL+R LS LK++K  QMPEDY K F++A+AVFQHA+IYDAE R+L  +KPL  +LLQ L E +DFLGP +PPS+AV+IAEG+L+P TMEAF      +CN    I+  +     E  + S + SCF+V    K RE R      +K V    +SK  +D  LEKL  P      NE   VL    +K P+NNPFK+RK DE+         E VS   EDE   +S    D+      +   L++A    +++Q  +  E I  V++ E    L +   SQ+SV+SK +   I RKR  G+ +K KS   N SG  KN+ILNFF+RV
Sbjct:  191 FKMDRYGNGEEMMLDKIFDSAGCTPSFKDFDKELLTGMCVLAGCDFLPSVPGIGIARAYALVSKYRNLERALSALKLQKKEQMPEDYFKLFRQAMAVFQHAKIYDAETRKLIPMKPLPLELLQVLGEEIDFLGPDMPPSIAVSIAEGRLNPVTMEAFNYFSSEECNQDLIIKNKEILPRTEKAEVSEEESCFMVVG--KDRE-RHIPDKKIKPVAGYKKSK--EDFALEKLITPSSVPRTNEVKPVLNYKSIKTPDNNPFKRRKVDELPLEPTQRVDEEVSVVSEDECALLSSATSDNLISKSSNKRKLNEA----LTDQKDNAIEHISGVTQEEDLVLLELPPESQKSVNSKASSA-IGRKRVVGKENKGKS---NSSGIPKNSILNFFSRV 570          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A072TGL8_MEDTR (5'-3' exonuclease family protein OS=Medicago truncatula GN=MTR_0110s0050 PE=4 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.170e-91
Identity = 175/361 (48.48%), Postives = 230/361 (63.71%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD---CNN-----IEPAKF-QNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPVKAGPKNENM----VLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDD--------SQLTFPDNSSLSDAGKLEISN----QIVSIAEQILMVSEVECCETLCINMGSQESVSSK 1006
            FKMDR GNGE + L KVF + S KPSF++F+ +LFTGMCVLAGCDFLPSVPGIG+ +AH+LVSKYRN+DR+LSVLK+EKG QMPEDY KSFK+ALAVF+HARIYD   +ELKH+KPL E  L+ LDE L+FLGP+IP ++  AIAEG L+P+T EAFD   C+      I+P    Q         +Q +CF +F S  T    K  T++     +S + KY  +   L+KL  P++    NE M      +ET LKVPNNNPF+ RK +E   LV  + E+   E+S +   +        S + F +  S++   K +  N    ++    EQ+  V+EVE C+ LC+NM SQESV SK
Sbjct:  191 FKMDREGNGERIELEKVFSAESCKPSFQSFNMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYRNIDRILSVLKLEKGDQMPEDYAKSFKDALAVFEHARIYDINTKELKHMKPLPESFLESLDEDLNFLGPEIPSTIVKAIAEGNLNPSTKEAFDKSECSRLPLHPIDPHTIGQLKKSEVPTIKQDNCFSIFGSQNT---NKNCTVTR----LSDKDKYSNEVTALQKLIMPLET---NETMTKPFTFDETHLKVPNNNPFRIRKHEEEISLV--QKEETMEEISIVSSGEYIDLNDYMSPINFQEEGSINLLKKRKFENVCLDKVEVTDEQVSGVTEVENCDGLCLNMESQESVKSK 539          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: I1KJ36_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 2.397e-91
Identity = 179/395 (45.32%), Postives = 246/395 (62.28%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD---CNN--IEPAKFQN-----SVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPV-KAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMS--------CIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERK-RGQNDKL-KSSNCNRSGTKN-TILNFFARV 1117
            FKMDR+GNGE + L KVF + S +PSFR+F+ +L TGMCVLAGCDFLPSVPGIGI +AH+LVSKYRNLDR+LSVLKIEKG QMPEDY KSF+EA+AVF+HA+IYD   +ELKH+ PL E  L  LD   DFLGP+IPPS+  AIAEG L+P+T +AFD   C+   ++P   Q+       E    SRQ S F + +SH TRE      +S K        KY  +A  L KL  P+   G + + ++ + TPLK P+NNPF+ RK +E T    +K   +K+  +        C+  DD +    +N S     +   S+++ +  E    V+EVE  +  C+ + S ES++S   +   + K R +++K  K SN  ++G+ N T+L+FF+RV
Sbjct:  191 FKMDRHGNGERIELEKVFSAESGRPSFRSFNMKLLTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKIEKGDQMPEDYAKSFQEAVAVFEHAQIYDVNSKELKHMNPLPENFLGSLDGKFDFLGPEIPPSIVTAIAEGNLNPSTKKAFDKSECSRFPLQPIDLQSIDQVRKAEVPAPSRQGSSFSIITSHYTRESNAVARLSDKD-------KYSNEALALHKLIMPLGNNGTEEKTIISDFTPLKFPDNNPFRIRK-NEGT--YQTKDTVQKVSFASNMGYTDLCMSPDDFEEKGSENLSRKRKFQNFCSDKVEATDELFSGVTEVEKSDIPCMAVESPESINSDQTKKIADLKGRSESNKQSKRSNSKKTGSNNITLLSFFSRV 575          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: W9RTG5_9ROSA (Exonuclease 1 OS=Morus notabilis GN=L484_017398 PE=4 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 5.378e-90
Identity = 169/347 (48.70%), Postives = 217/347 (62.54%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYF-KDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDE-----MTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLE--ISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRV 1018
            FKMDR+GNGEE++L  VFDS S  PSFRNFD EL TGMCVLAGCDFLPSVPGIGIVK+H+LVSKY NLDRVLSVLK+EK +QMPE Y KSF+EALAVFQHA IYD +I++LKH++PL E LL+ LD  LDFLGP+IPPSVA+AIAEG +DP +MEAFD  +                         SS + ++       S KQ  +  E K   K   L+KL  P       +   +   PLKVP+NNPFK+RKFD+     +   VS   + E L+ S I +  +       + +S   K+E     ++  + EQ  +V++ E  E LC+   SQESV+SK +++
Sbjct:  180 FKMDRFGNGEEILLHNVFDSASCTPSFRNFDNELLTGMCVLAGCDFLPSVPGIGIVKSHALVSKYLNLDRVLSVLKLEKRNQMPEGYPKSFREALAVFQHALIYDLDIKKLKHMRPLPEMLLESLDGNLDFLGPEIPPSVAIAIAEGNVDPISMEAFDRYS-------------------------SSRRLQDPPVKIQTSEKQNPIPNEKKCINKVEALQKLIMPSTIREAVQTKTVTNVPLKVPDNNPFKRRKFDQNHVDQIGSQVSCSTQVEDLDNSAISNSTNIYQEVRKNGVSRKRKIEEVTLYEVEKVGEQNSVVTKEENSEVLCLVSESQESVNSKASKI 501          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_ARATH (Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 4.040e-29
Identity = 62/164 (37.80%), Postives = 99/164 (60.37%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEP 493
            FKMD++G+G E   SK+    +   S   F  ++   MC+L+GCD+L S+PG+G+ +AH+L++K+++ DRV+  LK    S +P  Y +SFK AL  F+H R+YD    ++ H+  +++     L E  DF+GP +P  +A  IA G+LDP T   F   ++ P
Sbjct:  184 FKMDKFGHGVEFQASKL--PKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVS-VPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDN----LGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQAESVTP 340          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_ORYSJ (Exonuclease 1 OS=Oryza sativa subsp. japonica GN=EXO1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.548e-26
Identity = 55/158 (34.81%), Postives = 94/158 (59.49%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
            FKMD++G G E  ++++      +     F  ++   MC+L+GCD+LPS+PG+G+ +AH+L+ K +  ++V+  L+    S +P  Y ++F++A+  FQ  R+YD    ++ H+  +         E LDFLGP +P +VA  IA+G +DP T E F+
Sbjct:  184 FKMDKFGQGVEFHITRL--QRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVS-VPPQYEENFRKAIWAFQFQRVYDPVTEDIVHLSGIPHG----SSEDLDFLGPWLPQTVAKGIAQGNIDPITKEPFE 334          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DICDI (Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.360e-19
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQL-LQYLDEG------------------------LDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
            FKMD+YG  +E+    +         F +F++ +   MC+L+GCD+LPS+ G+G+  +  L+ ++R++++V   LK EK S   ++Y + F +A   F+H R++D   R L  + PL   +  ++L++                         LDF+GP I   +A  IA G +DP T E FD
Sbjct:  184 FKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKREK-SNFSQEYEQQFYKADFTFKHQRVFDPVSRILTTLLPLPTIIDSRFLNDNNNNTNDGDSNGDGSSGGSGSGGGFLDFIGPVIDDEIAEKIALGIIDPETHEQFD 365          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_XENLA (Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.325e-14
Identity = 58/183 (31.69%), Postives = 91/183 (49.73%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKI----EKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIE-PAKFQNSVETTDNSR 535
             KMD++GNG E+  ++ F    S      F +E F  MC+L+GCD+LPS+ GIG+ KA  L+    N D    + KI    +    +PE Y + F  A   F +  ++D   R+L  + P    +     E L++ GP +  SVA+ IA G +D  T +  D  N + P    +  ++ DN +
Sbjct:  184 LKMDKFGNGLEIDQAR-FGMCRSLGDV--FTEEKFRYMCILSGCDYLPSIHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNITVPEGYIEGFLRANNTFLYQLVFDPVERKLIPLNPYGNDV---NPEELNYAGPNMGDSVALQIALGNMDINTRKQIDDYNPDIPQLSHHRSQSWDNKQ 360          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_HUMAN (Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.147e-12
Identity = 67/213 (31.46%), Postives = 95/213 (44.60%), Query Frame = 2
Query:    2 FKMDRYGNGEE-----LVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQM----PEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPA--KFQNSVETTDNSRQASCFVVFSSHKTREKR-KTGTMS 604
             KMD++GNG E     L + +    V        F +E F  MC+L+GCD+L S+ GIG+ KA  ++    N D V  + KI    +M    PEDY   F  A   F +  ++D   R+L    PL         E L + G  +  S+A+ IA G  D  T E  D  N + A      S    D + Q S  V    H+    R ++GT+S
Sbjct:  184 LKMDQFGNGLEIDQARLGMCRQLGDV--------FTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKL---IPLNAYEDDVDPETLSYAGQYVDDSIALQIALGNKDINTFEQIDDYNPDTAMPAHSRSHSWDDKTCQKSANVSSIWHRNYSPRPESGTVS 385          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_MOUSE (Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.704e-12
Identity = 57/167 (34.13%), Postives = 77/167 (46.11%), Query Frame = 2
Query:    2 FKMDRYGNGEE-----LVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQM----PEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
             KMD++GNG E     L + K    V        F +E F  MC+L+GCD+L S+ GIG+ KA  ++    N D V  + KI    +M    PEDY   F  A   F +  ++D   R+L    PL         E L + G  +  SVA+ IA G  D  T E  D
Sbjct:  184 LKMDQFGNGLEVDQARLGMCKQLGDV--------FTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDYITGFIRANNTFLYQLVFDPIQRKL---VPLNAYGDDVNPETLTYAGQYVGDSVALQIALGNRDVNTFEQID 339          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_SCHPO (Exodeoxyribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=exo1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.280e-11
Identity = 48/174 (27.59%), Postives = 84/174 (48.28%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETT 523
            FKMD +GN    +  +  D  +++        E    M + +GCD+   V G+G+  A   + KY      +  ++++K  ++P  + K F  A   F+H R+Y  + + L H+ P   +L  + D    F+G      +A+ IAEG+ +P T  AFD   I+ +  Q+  +TT
Sbjct:  184 FKMDGFGN---CITIRRNDIANAQDLNLRLPIEKLRHMAIFSGCDYTDGVAGMGLKTALRYLQKYPEPRAAIRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCPKDKTLVHLSPPERELSVHEDA---FIGSFFDNQLAIDIAEGRSNPITKCAFD---IKDSSMQSFTKTT 348          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DROME (Exonuclease 1 OS=Drosophila melanogaster GN=tos PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.209e-11
Identity = 57/204 (27.94%), Postives = 97/204 (47.55%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIE-----KGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLT--EQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVV-FSSHKTREKRK 589
            FK+D  G+G  +   K+  ++       +FDK  F  MC+L+GCD+L S+PGIG+ KA   + K    D  +++ KI      +  ++ +DY ++F +A A F+H  IY+   R ++ +  L   E   +Y       L        A+ +A G L+P +M+  D  +  P K   + +    S+  S +   F S  T   +K
Sbjct:  184 FKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDK--FRRMCILSGCDYLDSLPGIGLAKACKFILKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCALEDYETDERYCSNAGTLLEDS---EQALHLALGNLNPFSMKRLD--SWTPEKAWPTPKNVKRSKHKSIWQTNFQSENTHTPKK 380          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DANRE (Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.210e-10
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 2
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRN-FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLK-----IEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
             KMD+ GNG E+    +        S  N F +E F  MC+L+GCD+L S+ GIG+ KA  L+    N D +L V+K     ++    +PE+Y + F +A   F +  ++D   R++  + P  + +       L + G  +     + +A G LD  TM+  D
Sbjct:  184 LKMDKQGNGLEIEQCHL----GRCKSLGNIFTEEKFRYMCILSGCDYLQSLYGIGLGKACKLLRMANNPD-ILKVIKKMGQYLKMDISVPEEYIEGFTKANNTFLYQLVFDPLRRKVVPLNPYPDHI---NPAALSYAGTNVGDEKGLQMALGNLDINTMQRID 339          
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: FEN1_CANTT (Flap endonuclease 1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RAD27 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.296e-8
Identity = 36/119 (30.25%), Postives = 66/119 (55.46%), Query Frame = 2
Query:   53 FDSVSSKPSFRNFD--KELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGS---QMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDF 394
             D +S K +    D  KE F  +C+L GCD+  ++ G+G V A+ L+ ++ +L++++    IEKG+    +PE++   + EA  +F +  +  A    LK  +P  E L++Y+ +G  F
Sbjct:  205 IDEISYKEAMAGLDMNKEQFVDLCILLGCDYCETIRGVGPVTAYKLIKEHGSLEKIVEW--IEKGNTKYTVPENW--PYAEARELFLNPEVKKASDISLKWKEPDVEGLIEYMVKGKGF 319          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9SU84_RICCO1.822e-10753.05Exonuclease, putative OS=Ricinus communis GN=RCOM_... [more]
M5WYY2_PRUPE4.165e-10650.50Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067L1M9_JATCU8.940e-10551.68Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A059D0K1_EUCGR1.022e-9647.72Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A068TR00_COFCA2.086e-9445.60Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
V7C719_PHAVU3.053e-9245.02Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A0A0LVU6_CUCSA1.020e-9148.35Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A072TGL8_MEDTR2.170e-9148.485'-3' exonuclease family protein OS=Medicago trunc... [more]
I1KJ36_SOYBN2.397e-9145.32Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
W9RTG5_9ROSA5.378e-9048.70Exonuclease 1 OS=Morus notabilis GN=L484_017398 PE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EXO1_ARATH4.040e-2937.80Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2... [more]
EXO1_ORYSJ2.548e-2634.81Exonuclease 1 OS=Oryza sativa subsp. japonica GN=E... [more]
EXO1_DICDI2.360e-1930.60Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 ... [more]
EXO1_XENLA1.325e-1431.69Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1[more]
EXO1_HUMAN1.147e-1231.46Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2[more]
EXO1_MOUSE1.704e-1234.13Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2[more]
EXO1_SCHPO1.280e-1127.59Exodeoxyribonuclease 1 OS=Schizosaccharomyces pomb... [more]
EXO1_DROME4.209e-1127.94Exonuclease 1 OS=Drosophila melanogaster GN=tos PE... [more]
EXO1_DANRE3.210e-1029.88Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1[more]
FEN1_CANTT1.296e-830.25Flap endonuclease 1 OS=Candida tropicalis (strain ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008918Helix-hairpin-helix motif, class 2SMARTSM00279HhH_4coord: 30..63
e-value: 6.1E-4
score: 29.1
NoneNo IPR availableGENE3D1.10.150.20coord: 29..92
e-value: 1.6E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR11081:SF275'-3' EXONUCLEASE FAMILY PROTEINcoord: 1..255
NoneNo IPR availablePANTHERPTHR11081:SF275'-3' EXONUCLEASE FAMILY PROTEINcoord: 296..370
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 296..370
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 1..255
IPR0200455'-3' exonuclease, C-terminal domainSUPERFAMILY478075' to 3' exonuclease, C-terminal subdomaincoord: 29..156

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015832 ID=g.arboreum_cottongen_reftransV1_0015832; Name=g.arboreum_cottongen_reftransV1_0015832; organism=Gossypium arboreum; type=contig; length=1195bp
ATTTAAAATGGACCGTTATGGCAATGGAGAAGAACTGGTTCTGTCAAAAG
TTTTTGATTCTGTATCCAGTAAACCTTCCTTCAGAAATTTTGATAAAGAA
TTGTTTACAGGTATGTGTGTCCTAGCTGGATGTGATTTCCTTCCATCGGT
TCCTGGAATTGGTATTGTAAAGGCACATTCCTTAGTTTCCAAGTATCGGA
ACTTAGACCGTGTTTTATCAGTTTTGAAGATTGAGAAGGGCAGTCAGATG
CCAGAAGATTACACCAAATCGTTCAAAGAAGCACTTGCAGTTTTTCAGCA
TGCCAGAATATATGATGCTGAAATCAGGGAGCTGAAACATATTAAACCTC
TTACAGAACAACTTCTGCAATATCTAGATGAAGGGCTTGATTTCCTGGGA
CCAAAAATCCCTCCATCAGTGGCAGTTGCGATTGCTGAAGGAAAGTTAGA
CCCCACTACAATGGAAGCCTTTGACTGTAATAATATAGAGCCTGCTAAGT
TTCAAAATTCTGTTGAAACTACTGATAATTCCAGACAAGCAAGCTGCTTC
GTGGTATTTTCTTCACATAAAACCAGAGAAAAAAGGAAGACAGGTACAAT
GAGCATGAAGCAAGTTGTAGTTTCAACTGAAAGCAAGTATTTTAAAGATG
CTGGATTGGAAAAATTAGCATTTCCAGTAAAAGCTGGTCCGAAAAATGAG
AATATGGTTTTAGAGGAAACTCCATTGAAGGTTCCAAATAATAACCCTTT
CAAGAAGAGAAAATTTGATGAAATGACTGAACTAGTTTCATCAAAAGGCG
AAGATGAGAAGTTGGAAATGTCATGTATTTTTCATGATGATAGTCAATTG
ACATTTCCTGACAATAGTAGTTTAAGTGATGCCGGGAAACTTGAAATCTC
TAATCAGATAGTTAGCATTGCTGAACAAATTTTAATGGTGAGTGAGGTAG
AATGTTGTGAGACCTTGTGCATCAATATGGGATCCCAAGAAAGTGTCAGC
TCTAAGCCAAACAGAGTGTACATTGAAAGAAAAAGAGGTCAAAATGACAA
GCTGAAGAGCAGTAATTGCAACAGGTCAGGGACTAAGAACACTATTTTGA
ACTTCTTTGCTCGTGTGTGATCATCCTATCTGTTTAATTCAAACAACTGA
TGCCACATTGACATCTGTACTGTTTAACCTTTATACTAGTTGGAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR008918HhH2
IPR006084XPG/Rad2
IPR020045DNA_polI_H3TH
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003824catalytic activity
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair