g.arboreum_cottongen_reftransV1_0015832, g.arboreum_cottongen_reftransV1_0015832 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015832
Unique Nameg.arboreum_cottongen_reftransV1_0015832
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1195
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0015832:1..1195 .
Chr11:69013336..69016350 +		n/a
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2Q3W8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 360/372 (96.77%), Postives = 364/372 (97.85%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVK  PKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSC+F DDSQLTFPDNSSLSD GKLEISNQI SIAEQI M+SEVECCETLCINMGSQESVSSKPNRVY ERKRGQN KLKSSNCNRSGTKNTILNFFARV
Sbjct:  104 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKTRPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCVFPDDSQLTFPDNSSLSDTGKLEISNQIDSIAEQISMMSEVECCETLCINMGSQESVSSKPNRVYSERKRGQNVKLKSSNCNRSGTKNTILNFFARV 475
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2SSJ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 739.569 bits (1908), Expect = 0.000e+0
Identity = 360/372 (96.77%), Postives = 364/372 (97.85%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVK  PKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSC+F DDSQLTFPDNSSLSD GKLEISNQI SIAEQI M+SEVECCETLCINMGSQESVSSKPNRVY ERKRGQN KLKSSNCNRSGTKNTILNFFARV
Sbjct:  148 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKTRPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCVFPDDSQLTFPDNSSLSDTGKLEISNQIDSIAEQISMMSEVECCETLCINMGSQESVSSKPNRVYSERKRGQNVKLKSSNCNRSGTKNTILNFFARV 519
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2NMC0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 739.569 bits (1908), Expect = 0.000e+0
Identity = 360/372 (96.77%), Postives = 364/372 (97.85%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVK  PKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSC+F DDSQLTFPDNSSLSD GKLEISNQI SIAEQI M+SEVECCETLCINMGSQESVSSKPNRVY ERKRGQN KLKSSNCNRSGTKNTILNFFARV
Sbjct:   60 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKTRPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCVFPDDSQLTFPDNSSLSDTGKLEISNQIDSIAEQISMMSEVECCETLCINMGSQESVSSKPNRVYSERKRGQNVKLKSSNCNRSGTKNTILNFFARV 431
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2RXQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 738.799 bits (1906), Expect = 0.000e+0
Identity = 360/372 (96.77%), Postives = 364/372 (97.85%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVK  PKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSC+F DDSQLTFPDNSSLSD GKLEISNQI SIAEQI M+SEVECCETLCINMGSQESVSSKPNRVY ERKRGQN KLKSSNCNRSGTKNTILNFFARV
Sbjct:  191 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKTRPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCVFPDDSQLTFPDNSSLSDTGKLEISNQIDSIAEQISMMSEVECCETLCINMGSQESVSSKPNRVYSERKRGQNVKLKSSNCNRSGTKNTILNFFARV 562
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2RQU1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 710.679 bits (1833), Expect = 0.000e+0
Identity = 346/358 (96.65%), Postives = 350/358 (97.77%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNR 1075
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVK  PKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSC+F DDSQLTFPDNSSLSD GKLEISNQI SIAEQI M+SEVECCETLCINMGSQESVSSKPNRVY ERKRGQN KLKSSNCNR
Sbjct:  191 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKTRPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCVFPDDSQLTFPDNSSLSDTGKLEISNQIDSIAEQISMMSEVECCETLCINMGSQESVSSKPNRVYSERKRGQNVKLKSSNCNR 548
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A061FWG9_THECC (5'-3' exonuclease family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_012569 PE=4 SV=1)

HSP 1 Score: 516.153 bits (1328), Expect = 9.038e-177
Identity = 273/395 (69.11%), Postives = 308/395 (77.97%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDC-----NNIEPAKFQNS-----VETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEM--------TELVSSKGED--EKLEMSCIFHDDSQLTFPDNSSLSDAGKLEI-SNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQND--KLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEELVL+KVFDS++SKPSFR FDKELF GMCVLAGCDFLPSVPGIGI KAHSLVSKYRNLDRVLSVLKIEKGSQMPEDY+KSFKEA+AVFQHARIYD EI+ LKH+KPLT+QLLQ LDEGLDFLGP+I PSVA+AIAEG LDPTTMEAFD      N+  P +FQ S     +ET D SRQ SCF+VFSSHKTREK KTGT  M+Q  VS E KY +DAGLE+LAFP+K+     N+V E+ PL +PNNNPFKKRK DEM        TEL SS  ED  E+ E+ C+F D++QL FP         K+E+ SNQI S AEQI MVSEVE CETL +N+GSQESVS  P R++  R RG+ND  KLK SNC  S TKN+ILNFFARV
Sbjct:  148 FKMDRYGNGEELVLAKVFDSITSKPSFRGFDKELFIGMCVLAGCDFLPSVPGIGIAKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYSKSFKEAVAVFQHARIYDGEIKGLKHMKPLTKQLLQILDEGLDFLGPEISPSVAIAIAEGILDPTTMEAFDSMATPGNHPVPTEFQASGKRQLLETADISRQESCFLVFSSHKTREKNKTGT--MRQGAVSIEKKYIQDAGLERLAFPLKSQLTKANVVTEDIPL-IPNNNPFKKRKLDEMHIAEAKDTTELASSNDEDEIERSEILCVFPDNTQLAFPGR-------KVEMSSNQIESTAEQISMVSEVESCETLHMNVGSQESVSCNPKRLFSGRGRGKNDKLKLKGSNCKNSETKNSILNFFARV 532
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A061FVV8_THECC (5'-3' exonuclease family protein, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_012569 PE=4 SV=1)

HSP 1 Score: 446.047 bits (1146), Expect = 1.444e-149
Identity = 236/338 (69.82%), Postives = 265/338 (78.40%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDC-----NNIEPAKFQNS-----VETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEM--------TELVSSKGED--EKLEMSCIFHDDSQLTFPDNSSLSDAGKLEI-SNQIVSIAEQILMVSEVE 952
            FKMDRYGNGEELVL+KVFDS++SKPSFR FDKELF GMCVLAGCDFLPSVPGIGI KAHSLVSKYRNLDRVLSVLKIEKGSQMPEDY+KSFKEA+AVFQHARIYD EI+ LKH+KPLT+QLLQ LDEGLDFLGP+I PSVA+AIAEG LDPTTMEAFD      N+  P +FQ S     +ET D SRQ SCF+VFSSHKTREK KTGT  M+Q  VS E KY +DAGLE+LAFP+K+     N+V E+ PL +PNNNPFKKRK DEM        TEL SS  ED  E+ E+ C+F D++QL FP         K+E+ SNQI S AEQI MVSEVE
Sbjct:  191 FKMDRYGNGEELVLAKVFDSITSKPSFRGFDKELFIGMCVLAGCDFLPSVPGIGIAKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYSKSFKEAVAVFQHARIYDGEIKGLKHMKPLTKQLLQILDEGLDFLGPEISPSVAIAIAEGILDPTTMEAFDSMATPGNHPVPTEFQASGKRQLLETADISRQESCFLVFSSHKTREKNKTGT--MRQGAVSIEKKYIQDAGLERLAFPLKSQLTKANVVTEDIPL-IPNNNPFKKRKLDEMHIAEAKDTTELASSNDEDEIERSEILCVFPDNTQLAFPGR-------KVEMSSNQIESTAEQISMVSEVE 518
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2SSJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 8.383e-138
Identity = 196/198 (98.99%), Postives = 198/198 (100.00%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTG 595
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTG
Sbjct:  191 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTG 388
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: D7SJ81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02690 PE=4 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 5.506e-124
Identity = 207/385 (53.77%), Postives = 258/385 (67.01%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDC-----NNIEPAKFQNS-----VETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPVKAGPKNENMVLE-ETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGT-KNTILNFFARV 1117
            FKMDRYGNGEE+VL +VFDSV+  PSF+NFDKELFTGMCVLAGCDFLPSVPGIGI +A+S+V+KYRNLDRVLSVLK EK +QMPEDYTKSF+EA+AVFQHARIYDA+ + ++H+KPLT+ LLQ LD  LDFLGP+IPPS+A AIAEG LDP TMEAFD      +  EP   Q S      E T  S + SCF +FSSH+TRE+R TG    K   V  E+KY  +A  L+K+ FP +     EN + + ETPL++P+NNPFKKRK +E                  I+ D                      QI SI EQI +V +V+  + +C+ + SQESV SKPN+V   +   +N+K K S+C  S + KN+ILNFF+RV
Sbjct:  169 FKMDRYGNGEEMVLDRVFDSVARAPSFQNFDKELFTGMCVLAGCDFLPSVPGIGIARAYSMVAKYRNLDRVLSVLKFEKRNQMPEDYTKSFREAVAVFQHARIYDADTKRVQHMKPLTDDLLQSLDGELDFLGPEIPPSIATAIAEGNLDPVTMEAFDHFSSHESQPEPTVTQTSNEIVKPEATAQSTEESCFTIFSSHETREERVTG----KSRPVIEETKYLNEAVALQKIMFPSEVHGMLENKITQDETPLEIPDNNPFKKRKLNE------------------IYLD----------------------QIPSITEQISVVVDVDNSDIMCVTLESQESVDSKPNKVADRKAISKNEKRKRSDCKSSESKKNSILNFFSRV 509
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: V4TWE1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007863mg PE=4 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.299e-112
Identity = 201/393 (51.15%), Postives = 272/393 (69.21%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSV------ETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYF-KDAGLEKLAFPVKAGPKNENM-VLEETPLKVPNNNPFKKRKFDEMT-ELVSSKGED-------EKLEMSCIFHDDSQLTFPDNSSLSDAGKLEI-SNQI---VSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKNT-ILNFFARV 1117
            FKMDR+GNGEELVL  VF S +  PSFRNFD+ELF GMCVLAGCDFLPS+PGIGI KA+S+VSKYRNLDRVLSVLK+EKGSQ+PEDY+KSF+EA+AVFQHARIYD + ++L+HIKPL ++LLQ +   LDFLGP+IPPS+A AIAEG+LDP  MEAF+ +    +    ++      E T  SR+ + F++F+S KT EK      + K+V VS E  Y  +DA L+KL  P+K    +E + V ++ PL+VPNNNPFKKRK  EM  + + S  ++       EKL++ CI  D   +  P     +++GK ++ SNQ+    SI++++ +++EVE    L +   SQESV+SKP ++   + R + +K K++NC  S  K+T ILNFF RV
Sbjct:  191 FKMDRHGNGEELVLDNVFGSETCTPSFRNFDQELFIGMCVLAGCDFLPSIPGIGIAKAYSMVSKYRNLDRVLSVLKLEKGSQVPEDYSKSFREAVAVFQHARIYDGDAKKLEHIKPLPQKLLQSIGGELDFLGPEIPPSIATAIAEGRLDPVGMEAFNVSLSSQSPVGKTLSRLKKAEITAGSREETGFMLFTSQKTMEK------APKEVPVSCERSYLNEDAALQKLLLPLK---DHETIKVPDDVPLQVPNNNPFKKRKLVEMQLDQIQSNSKEVLVVTDVEKLDVLCITPD---IILPKAPENNNSGKRKLHSNQLDQQQSISKEVSVITEVEDT-NLHVTTESQESVNSKPKKISKGKARSKTEKKKTNNCMSSVNKSTSILNFFPRV 570
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: FEN1_DROAN (Flap endonuclease 1 OS=Drosophila ananassae GN=Fen1 PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.621e-7
Identity = 30/91 (32.97%), Postives = 55/91 (60.44%), Query Frame = 2 
Query:  104 FTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYL 376
            F  +C+L GCD+  S+ GIG  +A  L++ YR+++ +L  L   K + +PE++  ++K A  +F    + +A+  ELK  +P  E L+++L
Sbjct:  223 FIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDTSKYT-VPENW--NYKIARELFIEPEVANADAIELKWTEPDEEGLVKFL 310
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: FEN1_DROPS (Flap endonuclease 1 OS=Drosophila pseudoobscura pseudoobscura GN=Fen1 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.909e-7
Identity = 30/91 (32.97%), Postives = 54/91 (59.34%), Query Frame = 2 
Query:  104 FTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYL 376
            F  +C+L GCD+  S+ GIG  +A  L++ YR+++ +L  L   K + +PE++  ++K A  +F    + DA   +LK  +P  E L+++L
Sbjct:  223 FIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDTSKYT-VPENW--NYKVARELFIEPEVADASAIDLKWTEPDEEGLVKFL 310
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: FEN1_DROPE (Flap endonuclease 1 OS=Drosophila persimilis GN=Fen1 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.341e-7
Identity = 30/91 (32.97%), Postives = 54/91 (59.34%), Query Frame = 2 
Query:  104 FTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYL 376
            F  +C+L GCD+  S+ GIG  +A  L++ YR+++ +L  L   K + +PE++  ++K A  +F    + DA   +LK  +P  E L+++L
Sbjct:  223 FIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETILDNLDTSKYT-VPENW--NYKVARELFIEPEVADASAIDLKWTEPDEEGLVKFL 310
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: FEN1_ENTDS (Flap endonuclease 1 OS=Entamoeba dispar (strain ATCC PRA-260 / SAW760) GN=FEN1 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.388e-7
Identity = 39/134 (29.10%), Postives = 65/134 (48.51%), Query Frame = 2 
Query:    8 MDRYGNGEELVLSKVFDSVSSKPSFR-----------NFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYL 376
            MD    G E V+ K   S + K   R            F  E F  +C+L GCD+  ++ G+G + A  L+ +Y++++ VL  L  +   ++PE++   +KEA  +F H  + D    +L+  K   E + QYL
Sbjct:  181 MDALTLGSEYVVRKFSASDNKKEPIREYSLSSILEETGFSMEQFIDLCILLGCDYCDTIKGVGPITAFELIQQYKSIENVLKHLSDK--YKVPENW--KYKEARELFLHPDVADFSDYKLEWNKLDEEGIKQYL 310
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: FEN1_DROWI (Flap endonuclease 1 OS=Drosophila willistoni GN=Fen1 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.459e-7
Identity = 30/91 (32.97%), Postives = 54/91 (59.34%), Query Frame = 2 
Query:  104 FTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYL 376
            F  +C+L GCD+  S+ GIG  +A  L++ YR+++ +L  L   K + +PE++  ++K A  +F    + DA   +LK  +P  E L+++L
Sbjct:  223 FIDLCILLGCDYCESIKGIGPKRAIELINSYRDIETILDNLDTSKYT-VPENW--NYKVARELFIEPEVADASAIDLKWTEPDEEGLVKFL 310
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2Q3W8_GOSRA0.000e+096.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SSJ3_GOSRA0.000e+096.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2NMC0_GOSRA0.000e+096.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RXQ4_GOSRA0.000e+096.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RQU1_GOSRA0.000e+096.65Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FWG9_THECC9.038e-17769.115'-3' exonuclease family protein, putative isoform... [more]
A0A061FVV8_THECC1.444e-14969.825'-3' exonuclease family protein, putative isoform... [more]
A0A0D2SSJ6_GOSRA8.383e-13898.99Uncharacterized protein OS=Gossypium raimondii GN=... [more]
D7SJ81_VITVI5.506e-12453.77Putative uncharacterized protein OS=Vitis vinifera... [more]
V4TWE1_9ROSI1.299e-11251.15Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
FEN1_DROAN1.621e-732.97Flap endonuclease 1 OS=Drosophila ananassae GN=Fen... [more]
FEN1_DROPS1.909e-732.97Flap endonuclease 1 OS=Drosophila pseudoobscura ps... [more]
FEN1_DROPE2.341e-732.97Flap endonuclease 1 OS=Drosophila persimilis GN=Fe... [more]
FEN1_ENTDS2.388e-729.10Flap endonuclease 1 OS=Entamoeba dispar (strain AT... [more]
FEN1_DROWI2.459e-732.97Flap endonuclease 1 OS=Drosophila willistoni GN=Fe... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008918Helix-hairpin-helix motif, class 2SMARTSM00279HhH_4coord: 30..63
e-value: 6.1E-4
score: 29.1
NoneNo IPR availableGENE3D1.10.150.20coord: 29..92
e-value: 1.6E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR11081:SF275'-3' EXONUCLEASE FAMILY PROTEINcoord: 1..255
NoneNo IPR availablePANTHERPTHR11081:SF275'-3' EXONUCLEASE FAMILY PROTEINcoord: 296..370
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 296..370
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 1..255
IPR0200455'-3' exonuclease, C-terminal domainSUPERFAMILY478075' to 3' exonuclease, C-terminal subdomaincoord: 29..156

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015832 ID=g.arboreum_cottongen_reftransV1_0015832; Name=g.arboreum_cottongen_reftransV1_0015832; organism=Gossypium arboreum; type=contig; length=1195bp
ATTTAAAATGGACCGTTATGGCAATGGAGAAGAACTGGTTCTGTCAAAAG
TTTTTGATTCTGTATCCAGTAAACCTTCCTTCAGAAATTTTGATAAAGAA
TTGTTTACAGGTATGTGTGTCCTAGCTGGATGTGATTTCCTTCCATCGGT
TCCTGGAATTGGTATTGTAAAGGCACATTCCTTAGTTTCCAAGTATCGGA
ACTTAGACCGTGTTTTATCAGTTTTGAAGATTGAGAAGGGCAGTCAGATG
CCAGAAGATTACACCAAATCGTTCAAAGAAGCACTTGCAGTTTTTCAGCA
TGCCAGAATATATGATGCTGAAATCAGGGAGCTGAAACATATTAAACCTC
TTACAGAACAACTTCTGCAATATCTAGATGAAGGGCTTGATTTCCTGGGA
CCAAAAATCCCTCCATCAGTGGCAGTTGCGATTGCTGAAGGAAAGTTAGA
CCCCACTACAATGGAAGCCTTTGACTGTAATAATATAGAGCCTGCTAAGT
TTCAAAATTCTGTTGAAACTACTGATAATTCCAGACAAGCAAGCTGCTTC
GTGGTATTTTCTTCACATAAAACCAGAGAAAAAAGGAAGACAGGTACAAT
GAGCATGAAGCAAGTTGTAGTTTCAACTGAAAGCAAGTATTTTAAAGATG
CTGGATTGGAAAAATTAGCATTTCCAGTAAAAGCTGGTCCGAAAAATGAG
AATATGGTTTTAGAGGAAACTCCATTGAAGGTTCCAAATAATAACCCTTT
CAAGAAGAGAAAATTTGATGAAATGACTGAACTAGTTTCATCAAAAGGCG
AAGATGAGAAGTTGGAAATGTCATGTATTTTTCATGATGATAGTCAATTG
ACATTTCCTGACAATAGTAGTTTAAGTGATGCCGGGAAACTTGAAATCTC
TAATCAGATAGTTAGCATTGCTGAACAAATTTTAATGGTGAGTGAGGTAG
AATGTTGTGAGACCTTGTGCATCAATATGGGATCCCAAGAAAGTGTCAGC
TCTAAGCCAAACAGAGTGTACATTGAAAGAAAAAGAGGTCAAAATGACAA
GCTGAAGAGCAGTAATTGCAACAGGTCAGGGACTAAGAACACTATTTTGA
ACTTCTTTGCTCGTGTGTGATCATCCTATCTGTTTAATTCAAACAACTGA
TGCCACATTGACATCTGTACTGTTTAACCTTTATACTAGTTGGAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR008918HhH2
IPR006084XPG/Rad2
IPR020045DNA_polI_H3TH
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003824catalytic activity
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair