g.arboreum_cottongen_reftransV1_0019868, g.arboreum_cottongen_reftransV1_0019868 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019868
Unique Nameg.arboreum_cottongen_reftransV1_0019868
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length428
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeg.arboreum_cottongen_reftransV1_0019868:1..428 .
Chr10:36263957..36265072 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067H613_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.453e-40
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            V   EMGYAMSR EIESE ++  +  ++A  S ++  KP   +DHEIAQLT LKS P E   + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW  DQ TS
Sbjct:    8 VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 125          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067H6F9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.384e-40
Identity = 77/128 (60.16%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   46 TLRNTIISLWVAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
             LR+ I S  V   EMGYAMSR EIESE ++  +  ++A  S ++  KP   +DHEIAQLT LKS P E   + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW  DQ TS
Sbjct:    6 ALRSCIASG-VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 132          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: V4VVT5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019830mg PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.384e-40
Identity = 77/128 (60.16%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   46 TLRNTIISLWVAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
             LR+ I S  V   EMGYAMSR EIESE ++  +  ++A  S ++  KP   +DHEIAQLT LKS P E   + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW  DQ TS
Sbjct:    6 ALRSCIASG-VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 132          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067HHA1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.077e-40
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            V   EMGYAMSR EIESE ++  +  ++A  S ++  KP   +DHEIAQLT LKS P E   + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW  DQ TS
Sbjct:    8 VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 125          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067HHJ2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.714e-39
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            V   EMGYAMSR EIESE ++  +  ++A  S ++  KP   +DHEIAQLT LKS P E   + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW  DQ TS
Sbjct:    8 VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 125          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.872e-27
Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSR E +  +    +  SE    +  +KP   +DHEIAQLT L+S P+E L + +  K+ LP+S +KMLAGRE N S RG FSSAD CH++SR+LPVN P + DQMTS
Sbjct:    1 MGYAMSRFETDVSVIFSSSSDSETSHDSLINKPVKNLDHEIAQLTRLRSAPHENLSRDLLVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTS 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.002e-26
Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 1
Query:  106 SRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            +R   ++   + GN    +G S   ++     DHEIAQLT  +S P++ L Q MPGK +L VS +KML GRE N+S RG FSSAD CH++SRYLP+NGPW  DQ TS
Sbjct:    5 TRFGKDNSACDSGNAVEGSGSSKGPNEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSRLLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTS 111          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067H613_CITSI5.453e-4061.86Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067H6F9_CITSI6.384e-4060.16Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4VVT5_9ROSI6.384e-4060.16Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067HHA1_CITSI8.077e-4061.86Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067HHJ2_CITSI1.714e-3961.86Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LE14B_LITER5.872e-2752.68LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
LE14B_PRUAR2.002e-2650.47LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19847WD40 REPEAT PROTEINcoord: 44..119
NoneNo IPR availablePANTHERPTHR19847:SF9SUBFAMILY NOT NAMEDcoord: 44..119

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019868 ID=g.arboreum_cottongen_reftransV1_0019868; Name=g.arboreum_cottongen_reftransV1_0019868; organism=Gossypium arboreum; type=contig; length=428bp
TGTTAATCTCAGTCTGACTGAATCTCAGCAAAATCCAAGGCTTCAACACT
CCGTAACACAATTATTAGCCTGTGGGTTGCCATTGTTGAAATGGGGTATG
CCATGAGTAGGCTGGAGATAGAATCTGAGTTGTTTGAAGGCGGTAATGTC
ACCAGTGAAGCTGGTTGCAGTAACAGGTCCGACAAACCATTCTGTAAAGT
AGACCACGAGATTGCCCAGCTTACAAACCTTAAATCAGTGCCTAATGAAC
GATTGCATCAACTCATGCCAGGAAAGAAAAAATTACCTGTTTCCCCAGTG
AAAATGTTGGCAGGTCGAGAAGGTAATTATTCAAGAAGAGGAGGATTCTC
ATCAGCAGATCGTTGTCACATGATTAGCCGATATTTGCCGGTAAATGGTC
CTTGGCTTGCGGACCAGATGACCAGCCG
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