g.arboreum_cottongen_reftransV1_0019868, g.arboreum_cottongen_reftransV1_0019868 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067H613_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 5.453e-40 Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1 Query: 76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 V EMGYAMSR EIESE ++ + ++A S ++ KP +DHEIAQLT LKS P E + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW DQ TS Sbjct: 8 VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 125
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067H6F9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 6.384e-40 Identity = 77/128 (60.16%), Postives = 91/128 (71.09%), Query Frame = 1 Query: 46 TLRNTIISLWVAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 LR+ I S V EMGYAMSR EIESE ++ + ++A S ++ KP +DHEIAQLT LKS P E + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW DQ TS Sbjct: 6 ALRSCIASG-VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 132
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: V4VVT5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019830mg PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 6.384e-40 Identity = 77/128 (60.16%), Postives = 91/128 (71.09%), Query Frame = 1 Query: 46 TLRNTIISLWVAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 LR+ I S V EMGYAMSR EIESE ++ + ++A S ++ KP +DHEIAQLT LKS P E + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW DQ TS Sbjct: 6 ALRSCIASG-VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 132
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067HHA1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 8.077e-40 Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1 Query: 76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 V EMGYAMSR EIESE ++ + ++A S ++ KP +DHEIAQLT LKS P E + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW DQ TS Sbjct: 8 VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 125
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067HHJ2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.714e-39 Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1 Query: 76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 V EMGYAMSR EIESE ++ + ++A S ++ KP +DHEIAQLT LKS P E + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW DQ TS Sbjct: 8 VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 125
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.872e-27 Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSR E + + + SE + +KP +DHEIAQLT L+S P+E L + + K+ LP+S +KMLAGRE N S RG FSSAD CH++SR+LPVN P + DQMTS Sbjct: 1 MGYAMSRFETDVSVIFSSSSDSETSHDSLINKPVKNLDHEIAQLTRLRSAPHENLSRDLLVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTS 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.002e-26 Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 1 Query: 106 SRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 +R ++ + GN +G S ++ DHEIAQLT +S P++ L Q MPGK +L VS +KML GRE N+S RG FSSAD CH++SRYLP+NGPW DQ TS Sbjct: 5 TRFGKDNSACDSGNAVEGSGSSKGPNEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSRLLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTS 111 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019868 ID=g.arboreum_cottongen_reftransV1_0019868; Name=g.arboreum_cottongen_reftransV1_0019868; organism=Gossypium arboreum; type=contig; length=428bpback to top |