g.arboreum_cottongen_reftransV1_0019868, g.arboreum_cottongen_reftransV1_0019868 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019868
Unique Nameg.arboreum_cottongen_reftransV1_0019868
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0019868:1..428 .
Chr10:36263957..36265072 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0D2PLS6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G007100 PE=4 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.714e-51
Identity = 85/112 (75.89%), Postives = 95/112 (84.82%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSRLEIESELF+GGN   EA  S R  K F KVD EI+QLTNL+S PN+RLHQL+PGK++LPVSPV+MLAGRE NYS +G FSSADRCHM+SRYLPVNGPWL DQ TS
Sbjct:    1 MGYAMSRLEIESELFDGGNTVHEASSSTRPGKLFPKVDDEISQLTNLRSGPNDRLHQLVPGKQQLPVSPVRMLAGRESNYSGKGRFSSADRCHMLSRYLPVNGPWLVDQTTS 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0D2QVT5_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_004G0845001 PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.086e-45
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGN 327
            MGYAMSRLEIESELFEGGNVT+EAGCSNR DKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGRE +
Sbjct:    1 MGYAMSRLEIESELFEGGNVTNEAGCSNRFDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREAD 79          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: B9SFK3_RICCO (LEC14B protein, putative OS=Ricinus communis GN=RCOM_0646990 PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.229e-43
Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSRLEI+SE  +GG   +E G   RS+K    +DHEI+  TNLKS P++RL +++PGK++LPVS VKMLAGREGNYS RG FS+ADRCHM+ RYLPVNGPWL DQMTS
Sbjct:    1 MGYAMSRLEIDSENCDGGKTNNEIGNGQRSNKSLHNLDHEISLATNLKSRPHQRLAEVIPGKRELPVSTVKMLAGREGNYSGRGRFSAADRCHMLGRYLPVNGPWLIDQMTS 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067JCG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22002 PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 9.224e-43
Identity = 75/122 (61.48%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   61 IISLWVAIVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
             +  W +I EMGYAMSRLEI+S+  +GG   +E G   RS+K    +DHEI+  T LKS P++RL Q++PGK++  VS VKMLAGREGNYS RG FS+ADRCHM+ RYLPVNGPWL DQMTS
Sbjct:    3 FVPAWASIDEMGYAMSRLEIDSDPCDGGRNINEIGNGQRSNKSLTNLDHEISLNTKLKSRPHDRLAQVIPGKREYAVSTVKMLAGREGNYSGRGRFSAADRCHMLGRYLPVNGPWLIDQMTS 124          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067H8X0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.464e-41
Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = 1
Query:   88 EMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            EMGYAMSR EIESE ++  +  ++A  S ++  KP   +DHEIAQLT LKS P E   + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW  DQ TS
Sbjct:   12 EMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 125          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: W9SZL1_9ROSA (LEC14B protein OS=Morus notabilis GN=L484_020421 PE=4 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.012e-41
Identity = 74/115 (64.35%), Postives = 91/115 (79.13%), Query Frame = 1
Query:   82 IVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            + EMGY+MSRLE+ES+L + GN   E   S+RS++P  K+DHEIAQ+T L+S P+E L  + PGK++LPVS VKMLA REGNYS RG FSSAD CH++SRYLPVNGPWL DQM S
Sbjct:   10 VDEMGYSMSRLELESDLCDVGNKMPEVSSSSRSNRPLSKLDHEIAQITKLRSGPHELLSHVGPGKRELPVSTVKMLARREGNYSGRGRFSSADCCHVLSRYLPVNGPWLVDQMNS 124          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0B2P7Z0_GLYSO (LEC14B protein OS=Glycine soja GN=glysoja_010992 PE=4 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.683e-41
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 1
Query:   82 IVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            I EMGYAMSRLEIES L E G+   E   S  + +P   +D+EIAQ+T LKS P+++L Q+  G+ +LPVSPVKMLAGRE NYS RG FSSADRCH++SRYLPVNGPWL DQM+S
Sbjct:   10 IDEMGYAMSRLEIESGLSEDGDAIQEDSSSGETKRPLKNLDNEIAQITKLKSTPHQQLVQVGTGRPELPVSPVKMLAGRESNYSGRGRFSSADRCHLLSRYLPVNGPWLIDQMSS 124          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: C6TA39_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.524e-41
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 1
Query:   82 IVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            I EMGYAMSRLEIES L E G+   E   S  + +P   +D+EIAQ+T LKS P+++L Q+  G+ +LPVSPVKMLAGRE NYS RG FSSADRCH++SRYLPVNGPWL DQM+S
Sbjct:   10 IDEMGYAMSRLEIESGLSEDGDAIQEDSSSGETKRPLKNLDNEIAQITKLKSTPHQQLVQVGTGRPELPVSPVKMLAGRESNYSGRGRFSSADRCHLLSRYLPVNGPWLIDQMSS 124          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067H6G2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.692e-40
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            V   EMGYAMSR EIESE ++  +  ++A  S ++  KP   +DHEIAQLT LKS P E   + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW  DQ TS
Sbjct:    8 VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 125          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: B9I9Z2_POPTR (Transducin family protein OS=Populus trichocarpa GN=POPTR_0014s13180g PE=4 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.566e-40
Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSRLE ESEL +GG    EAG S R+      +DHEIAQ+T LKS P+++L +L+PG  K  VS VKML GRE NYS RG FS+ADRCHM+SRYLPVNGPWL DQM++
Sbjct:    1 MGYAMSRLETESELCDGGKTIPEAGSSKRASNWLNNLDHEIAQVTKLKSSPHKQLAELVPGMHKSSVSTVKMLVGREANYSARGRFSAADRCHMLSRYLPVNGPWLVDQMST 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.872e-27
Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSR E +  +    +  SE    +  +KP   +DHEIAQLT L+S P+E L + +  K+ LP+S +KMLAGRE N S RG FSSAD CH++SR+LPVN P + DQMTS
Sbjct:    1 MGYAMSRFETDVSVIFSSSSDSETSHDSLINKPVKNLDHEIAQLTRLRSAPHENLSRDLLVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTS 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.002e-26
Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 1
Query:  106 SRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            +R   ++   + GN    +G S   ++     DHEIAQLT  +S P++ L Q MPGK +L VS +KML GRE N+S RG FSSAD CH++SRYLP+NGPW  DQ TS
Sbjct:    5 TRFGKDNSACDSGNAVEGSGSSKGPNEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSRLLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTS 111          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2PLS6_GOSRA1.714e-5175.89Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QVT5_GOSRA1.086e-4594.94Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
B9SFK3_RICCO3.229e-4366.96LEC14B protein, putative OS=Ricinus communis GN=RC... [more]
A0A067JCG3_JATCU9.224e-4361.48Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A067H8X0_CITSI1.464e-4163.16Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
W9SZL1_9ROSA2.012e-4164.35LEC14B protein OS=Morus notabilis GN=L484_020421 P... [more]
A0A0B2P7Z0_GLYSO3.683e-4164.35LEC14B protein OS=Glycine soja GN=glysoja_010992 P... [more]
C6TA39_SOYBN4.524e-4164.35Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A067H6G2_CITSI1.692e-4061.86Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
B9I9Z2_POPTR2.566e-4064.29Transducin family protein OS=Populus trichocarpa G... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LE14B_LITER5.872e-2752.68LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
LE14B_PRUAR2.002e-2650.47LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19847WD40 REPEAT PROTEINcoord: 44..119
NoneNo IPR availablePANTHERPTHR19847:SF9SUBFAMILY NOT NAMEDcoord: 44..119

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019868 ID=g.arboreum_cottongen_reftransV1_0019868; Name=g.arboreum_cottongen_reftransV1_0019868; organism=Gossypium arboreum; type=contig; length=428bp
TGTTAATCTCAGTCTGACTGAATCTCAGCAAAATCCAAGGCTTCAACACT
CCGTAACACAATTATTAGCCTGTGGGTTGCCATTGTTGAAATGGGGTATG
CCATGAGTAGGCTGGAGATAGAATCTGAGTTGTTTGAAGGCGGTAATGTC
ACCAGTGAAGCTGGTTGCAGTAACAGGTCCGACAAACCATTCTGTAAAGT
AGACCACGAGATTGCCCAGCTTACAAACCTTAAATCAGTGCCTAATGAAC
GATTGCATCAACTCATGCCAGGAAAGAAAAAATTACCTGTTTCCCCAGTG
AAAATGTTGGCAGGTCGAGAAGGTAATTATTCAAGAAGAGGAGGATTCTC
ATCAGCAGATCGTTGTCACATGATTAGCCGATATTTGCCGGTAAATGGTC
CTTGGCTTGCGGACCAGATGACCAGCCG
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