g.arboreum_cottongen_reftransV1_0019868, g.arboreum_cottongen_reftransV1_0019868 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0D2PLS6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G007100 PE=4 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 1.714e-51 Identity = 85/112 (75.89%), Postives = 95/112 (84.82%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSRLEIESELF+GGN EA S R K F KVD EI+QLTNL+S PN+RLHQL+PGK++LPVSPV+MLAGRE NYS +G FSSADRCHM+SRYLPVNGPWL DQ TS Sbjct: 1 MGYAMSRLEIESELFDGGNTVHEASSSTRPGKLFPKVDDEISQLTNLRSGPNDRLHQLVPGKQQLPVSPVRMLAGRESNYSGKGRFSSADRCHMLSRYLPVNGPWLVDQTTS 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0D2QVT5_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_004G0845001 PE=4 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.086e-45 Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGN 327 MGYAMSRLEIESELFEGGNVT+EAGCSNR DKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGRE + Sbjct: 1 MGYAMSRLEIESELFEGGNVTNEAGCSNRFDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREAD 79
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: B9SFK3_RICCO (LEC14B protein, putative OS=Ricinus communis GN=RCOM_0646990 PE=4 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.229e-43 Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSRLEI+SE +GG +E G RS+K +DHEI+ TNLKS P++RL +++PGK++LPVS VKMLAGREGNYS RG FS+ADRCHM+ RYLPVNGPWL DQMTS Sbjct: 1 MGYAMSRLEIDSENCDGGKTNNEIGNGQRSNKSLHNLDHEISLATNLKSRPHQRLAEVIPGKRELPVSTVKMLAGREGNYSGRGRFSAADRCHMLGRYLPVNGPWLIDQMTS 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067JCG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22002 PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 9.224e-43 Identity = 75/122 (61.48%), Postives = 92/122 (75.41%), Query Frame = 1 Query: 61 IISLWVAIVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 + W +I EMGYAMSRLEI+S+ +GG +E G RS+K +DHEI+ T LKS P++RL Q++PGK++ VS VKMLAGREGNYS RG FS+ADRCHM+ RYLPVNGPWL DQMTS Sbjct: 3 FVPAWASIDEMGYAMSRLEIDSDPCDGGRNINEIGNGQRSNKSLTNLDHEISLNTKLKSRPHDRLAQVIPGKREYAVSTVKMLAGREGNYSGRGRFSAADRCHMLGRYLPVNGPWLIDQMTS 124
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067H8X0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.464e-41 Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = 1 Query: 88 EMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 EMGYAMSR EIESE ++ + ++A S ++ KP +DHEIAQLT LKS P E + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW DQ TS Sbjct: 12 EMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 125
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: W9SZL1_9ROSA (LEC14B protein OS=Morus notabilis GN=L484_020421 PE=4 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.012e-41 Identity = 74/115 (64.35%), Postives = 91/115 (79.13%), Query Frame = 1 Query: 82 IVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 + EMGY+MSRLE+ES+L + GN E S+RS++P K+DHEIAQ+T L+S P+E L + PGK++LPVS VKMLA REGNYS RG FSSAD CH++SRYLPVNGPWL DQM S Sbjct: 10 VDEMGYSMSRLELESDLCDVGNKMPEVSSSSRSNRPLSKLDHEIAQITKLRSGPHELLSHVGPGKRELPVSTVKMLARREGNYSGRGRFSSADCCHVLSRYLPVNGPWLVDQMNS 124
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0B2P7Z0_GLYSO (LEC14B protein OS=Glycine soja GN=glysoja_010992 PE=4 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 3.683e-41 Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 1 Query: 82 IVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 I EMGYAMSRLEIES L E G+ E S + +P +D+EIAQ+T LKS P+++L Q+ G+ +LPVSPVKMLAGRE NYS RG FSSADRCH++SRYLPVNGPWL DQM+S Sbjct: 10 IDEMGYAMSRLEIESGLSEDGDAIQEDSSSGETKRPLKNLDNEIAQITKLKSTPHQQLVQVGTGRPELPVSPVKMLAGRESNYSGRGRFSSADRCHLLSRYLPVNGPWLIDQMSS 124
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: C6TA39_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 4.524e-41 Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 1 Query: 82 IVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 I EMGYAMSRLEIES L E G+ E S + +P +D+EIAQ+T LKS P+++L Q+ G+ +LPVSPVKMLAGRE NYS RG FSSADRCH++SRYLPVNGPWL DQM+S Sbjct: 10 IDEMGYAMSRLEIESGLSEDGDAIQEDSSSGETKRPLKNLDNEIAQITKLKSTPHQQLVQVGTGRPELPVSPVKMLAGRESNYSGRGRFSSADRCHLLSRYLPVNGPWLIDQMSS 124
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A067H6G2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010883mg PE=4 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.692e-40 Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1 Query: 76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCS-NRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 V EMGYAMSR EIESE ++ + ++A S ++ KP +DHEIAQLT LKS P E + +PGK+ LPVS VKMLAGREGNYS RG FS+AD CHM+SRYLPVNGPW DQ TS Sbjct: 8 VDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKKPLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTS 125
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: B9I9Z2_POPTR (Transducin family protein OS=Populus trichocarpa GN=POPTR_0014s13180g PE=4 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 2.566e-40 Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSRLE ESEL +GG EAG S R+ +DHEIAQ+T LKS P+++L +L+PG K VS VKML GRE NYS RG FS+ADRCHM+SRYLPVNGPWL DQM++ Sbjct: 1 MGYAMSRLETESELCDGGKTIPEAGSSKRASNWLNNLDHEIAQVTKLKSSPHKQLAELVPGMHKSSVSTVKMLVGREANYSARGRFSAADRCHMLSRYLPVNGPWLVDQMST 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.872e-27 Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSR E + + + SE + +KP +DHEIAQLT L+S P+E L + + K+ LP+S +KMLAGRE N S RG FSSAD CH++SR+LPVN P + DQMTS Sbjct: 1 MGYAMSRFETDVSVIFSSSSDSETSHDSLINKPVKNLDHEIAQLTRLRSAPHENLSRDLLVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTS 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.002e-26 Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 1 Query: 106 SRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 +R ++ + GN +G S ++ DHEIAQLT +S P++ L Q MPGK +L VS +KML GRE N+S RG FSSAD CH++SRYLP+NGPW DQ TS Sbjct: 5 TRFGKDNSACDSGNAVEGSGSSKGPNEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSRLLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTS 111 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019868 ID=g.arboreum_cottongen_reftransV1_0019868; Name=g.arboreum_cottongen_reftransV1_0019868; organism=Gossypium arboreum; type=contig; length=428bpback to top |