g.arboreum_cottongen_reftransV1_0012212, g.arboreum_cottongen_reftransV1_0012212 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Match: A0A067H0N2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000014mg PE=4 SV=1) HSP 1 Score: 428.328 bits (1100), Expect = 5.384e-132 Identity = 232/333 (69.67%), Postives = 265/333 (79.58%), Query Frame = 1 Query: 1 QGRTTSIYSLLGRSGENSTPSRHPLLLGPSSLQSASP-RQSENAHDMILADRNYDSTSTRLDTIFRSLRNGRHSHRLNLWVDESQQSSGSSAATVPQGLEELLVSQLRRPVPEKTSDHNTSTVEPQTHGEGSQLQGSGPGATPEIPVVNSGNNENANVLPSS-AATDSSLNADGRPAVTDSLQGTDASNIHQQSVEMQFEQNDAAVRVIEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSSDRI--SDPQAARARRTNVALGNSTAVGGRDVPLHSVTEVSENSSREAEQDSTTAEQQMNSDGGSGSIDPAFLDALPEELRTEV 987 Q RTTSIYSLLGR+G++ SRHPLLLGPSS ++P RQS DRN +STS+RLDTIFRSLR+GRH HRLNLW+D++QQ+ GSSAA VPQGLEE+L+SQLRRP+P+K D +TS EPQ + EGSQLQ S GA PEIP N+ N EN N PSS AA +SS NAD RPA +DS+QGT AS H QS EMQFEQNDA VR +EAVSQES GSGATLGESLRSLDVEIGSADGHDDGGERQGS+DR+ D Q R RRTNV+ G+ST V GRD PLHSVTEVSENSSREA+QD+ EQQ+N++ GSGSIDPAFL+ALPEELR EV Sbjct: 2297 QARTTSIYSLLGRNGDSVASSRHPLLLGPSSSSHSAPARQS---------DRNVESTSSRLDTIFRSLRSGRHGHRLNLWMDDNQQNGGSSAAVVPQGLEEILISQLRRPLPQK-PDQSTSPAEPQNNIEGSQLQESEAGARPEIPGENNVNTENINAPPSSTAAIESSGNADVRPAASDSVQGTHASITHPQSAEMQFEQNDAVVRDVEAVSQESGGSGATLGESLRSLDVEIGSADGHDDGGERQGSADRMPSGDQQGTRIRRTNVSFGHSTPVSGRDAPLHSVTEVSENSSREADQDAPAVEQQINTNAGSGSIDPAFLEALPEELRAEV 2619
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Match: W9RQ49_9ROSA (E3 ubiquitin-protein ligase UPL2 OS=Morus notabilis GN=L484_001721 PE=4 SV=1) HSP 1 Score: 425.246 bits (1092), Expect = 5.700e-131 Identity = 228/331 (68.88%), Postives = 261/331 (78.85%), Query Frame = 1 Query: 1 QGRTTSIYSLLGRSGENSTPSRHPLLLGPSSLQSASPRQSENAHDMILADRNYDSTSTRLDTIFRSLRNGRHSHRLNLWVDESQQSSGSSAATVPQGLEELLVSQLRRPVPEKTSDHNTSTVEPQTHGEGSQLQGSGPGATPEIPVVNSGNNENANVLPSSAATDSSLNADGRPAVTDSLQGTDASNIHQQSVEMQFEQNDAAVRVIEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSSDR--ISDPQAARARRTNVALGNSTAVGGRDVPLHSVTEVSENSSREAEQDSTTAEQQMNSDGGSGSIDPAFLDALPEELRTEV 987 QGRTTSIYSLLGR+GE++ PSRHPLL+GPS L A P QSEN D+ L DRN ++TS+RLD +FRSLRNGRH HRLNLW+D++QQ GS+A VPQGLEELLVSQLRRP PEKTSD +T+ V P+ E QLQ S G P++ V N+ N E+ NV + A D+S +AD RPA T SLQ D ++ H QSVEMQFE ND+AVR +EA+SQES GSGATLGESLRSLDVEIGSADGHDDGGERQGS+DR + D +AR RRTNV+ GNSTA RDV LHSVTEVSENSSREAEQD EQQMNSD GSG+IDPAFLDALPEELR EV Sbjct: 2242 QGRTTSIYSLLGRTGESAAPSRHPLLVGPS-LHPAPPGQSENVRDIPLPDRNSENTSSRLDAVFRSLRNGRHGHRLNLWIDDNQQGGGSNAGVVPQGLEELLVSQLRRPTPEKTSDQDTAAV-PEDKAE-VQLQESEGGPRPDVSVENNVNAESRNVPAPTDAIDTSGSADVRPAETGSLQTADVASTHSQSVEMQFEHNDSAVRDVEAISQESGGSGATLGESLRSLDVEIGSADGHDDGGERQGSTDRMPLGDSHSARTRRTNVSFGNSTA-SARDVALHSVTEVSENSSREAEQDGPATEQQMNSDAGSGAIDPAFLDALPEELRAEV 2568
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Match: B9SMZ3_RICCO (E3 ubiquitin protein ligase upl2, putative OS=Ricinus communis GN=RCOM_0482820 PE=4 SV=1) HSP 1 Score: 415.231 bits (1066), Expect = 2.088e-127 Identity = 224/331 (67.67%), Postives = 263/331 (79.46%), Query Frame = 1 Query: 1 QGRTTSIYSLLGRSGENSTPSRHPLLLGPSSLQSASPRQSENAHDMILADRNYDSTSTRLDTIFRSLRNGRHSHRLNLWVDESQQSSGSSAATVPQGLEELLVSQLRRPVPEKTSDHNTSTVEPQTHGEGSQLQGSGPGATPEIPVVNSGNNENANVL-PSSAATDSSLNADGRPAVTDSLQGTDASNIHQQSVEMQFEQNDAAVRVIEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSSDRIS-DPQAARARRTNVALGNSTAVGGRDVPLHSVTEVSENSSREAEQDSTTAEQQMNSDGGSGSIDPAFLDALPEELRTEV 987 QGRTTSIYSLLGRSG+++ PSRHPLL+GPSS SA+ RQ +NA D+ +DRN ++TS++LDTIFRSLRNGRH HRLNLW + Q SG S++++PQGLEELLVSQLRRP PEK+SD NTS+VEP ++GE +QL A P++PV N+ NN ++N L PSS A S N++ RP +DS H QS+EMQFEQNDA VR +EAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGS+DR+ DPQA R RRTNV+ GNSTAV GRD LHSVTEV ENSSREA+QD T EQ++ + GSGSIDPAFLDALPEELR EV Sbjct: 2274 QGRTTSIYSLLGRSGDSAAPSRHPLLVGPSSSHSAASRQLDNARDVGFSDRNLENTSSQLDTIFRSLRNGRHGHRLNLW-SQDNQQSGGSSSSLPQGLEELLVSQLRRPAPEKSSDQNTSSVEPTSNGEAAQLHEPD-AAQPDVPVENNVNNGSSNALPPSSVAVAGSGNSEMRPVTSDS---------HSQSIEMQFEQNDATVRDVEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSADRMHLDPQATRTRRTNVSFGNSTAVSGRDASLHSVTEVPENSSREADQDGPTVEQEIGGEAGSGSIDPAFLDALPEELRAEV 2593
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Match: A0A067LBL4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15911 PE=4 SV=1) HSP 1 Score: 405.601 bits (1041), Expect = 2.117e-124 Identity = 221/331 (66.77%), Postives = 251/331 (75.83%), Query Frame = 1 Query: 1 QGRTTSIYSLLGRSGENSTPSRHPLLLGPSSLQSASPRQSENAHDMILADRNYDSTSTRLDTIFRSLRNGRH-SHRLNLWVDESQQSSGSSAATVPQGLEELLVSQLRRPVPEKTSDHNTSTVEPQTHGEGSQLQGSGPGATPEIPVVNSGNNENANVLPSSAATDSSLNADGRPAVTDSLQGTDASNIHQQSVEMQFEQNDAAVRVIEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSSDRIS-DPQAARARRTNVALGNSTAVGGRDVPLHSVTEVSENSSREAEQDSTTAEQQMNSDGGSGSIDPAFLDALPEELRTEV 987 QGRTTSIYSLLGRS +N+ PSRHPLL+GP+S SAS RQSENA DM+ +DRN ++TS++LDTIFRSLRNGRH HRLNLW D++QQ+ GS+ A+VPQGLEELLVSQLRRP PEK+ D + S EP+++GE QL G I N N + PSS A S N + RP +DS QSVEMQFEQNDA VR +EAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGS+DR+ DPQA R RRTNV+ GNST V GRD LHSVTEVSENSSREA+QD EQQ+ + GSGSIDPAFLDALPEELR EV Sbjct: 1184 QGRTTSIYSLLGRSSDNAAPSRHPLLVGPASSHSASARQSENARDMVFSDRNLENTSSQLDTIFRSLRNGRHGHHRLNLWSDDNQQNGGST-ASVPQGLEELLVSQLRRPAPEKSLDQSASMTEPKSNGEVGQLPGQDAAQPGTIVENNVNNESSNVPPPSSVAEARSSNTEMRPVTSDS---------QSQSVEMQFEQNDAVVRDVEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSADRMHLDPQATRTRRTNVSFGNSTTVSGRDASLHSVTEVSENSSREADQDGPAVEQQIGGEAGSGSIDPAFLDALPEELRAEV 1504
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Match: B9GN81_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s11110g PE=4 SV=2) HSP 1 Score: 394.43 bits (1012), Expect = 3.584e-120 Identity = 216/330 (65.45%), Postives = 247/330 (74.85%), Query Frame = 1 Query: 1 QGRTTSIYSLLGRSGENSTPSRHPLLLGPSSLQSASPRQSENAHDMILADRNYDSTSTRLDTIFRSLRNGRHSHRLNLWVDESQQSSGSSAATVPQGLEELLVSQLRRPVPEKTSDHNTSTVEPQTHGEGSQLQGSGPGATPEIPVVNSGNNENANVLPSSAATDSSLNADGRPAVTDSLQGTDASNIHQQSVEMQFEQNDAAVRVIEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSSDRIS-DPQAARARRTNVALGNSTAVGGRDVPLHSVTEVSENSSREAEQDSTTAEQQMNSDGGSGSIDPAFLDALPEELRTEV 987 QGRTTSIY+LLGR G+++ PSRHPLL+GPSS PRQ+ENA DM+ DRN +STS +LDTIFRSLRNGRH +RLNLW+D++QQS GS+ +VP GLEELLVS LR+P EK SD NT T EP+ +GE QLQ P+I V N+ N E +N A T +S+ DG V G AS H QSVEMQ EQNDAA R +EAVSQESS SGATLGESLRSLDVEIGSADGHDDGGERQGS+DR+ DPQ+ R RRT+++ GNST GRD LHSVTEVSENSSREAEQD EQQ+ D GSGSIDPAFLDALPEELR EV Sbjct: 2247 QGRTTSIYNLLGRGGDSAAPSRHPLLVGPSSSNLGLPRQAENARDMVFTDRNLESTSLQLDTIFRSLRNGRHGNRLNLWMDDNQQSGGSN-VSVPTGLEELLVSHLRQPNTEKLSDPNTLTGEPKRNGENVQLQEPEADTHPDIQVENNANLEGSN-----APTTTSITIDGPGNVE---IGLAASESHTQSVEMQLEQNDAAARDVEAVSQESSESGATLGESLRSLDVEIGSADGHDDGGERQGSADRMPLDPQSTRIRRTSMSFGNSTLATGRDASLHSVTEVSENSSREAEQDGPAVEQQIGGDTGSGSIDPAFLDALPEELRAEV 2567 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0012212 ID=g.arboreum_cottongen_reftransV1_0012212; Name=g.arboreum_cottongen_reftransV1_0012212; organism=Gossypium arboreum; type=contig; length=988bpback to top |