g.arboreum_cottongen_reftransV1_0012212, g.arboreum_cottongen_reftransV1_0012212 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0012212
Unique Nameg.arboreum_cottongen_reftransV1_0012212
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length988
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0012212:10..988 .
Chr10:8505452..8506566 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Match: A0A067H0N2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000014mg PE=4 SV=1)

HSP 1 Score: 428.328 bits (1100), Expect = 5.384e-132
Identity = 232/333 (69.67%), Postives = 265/333 (79.58%), Query Frame = 1
Query:    1 QGRTTSIYSLLGRSGENSTPSRHPLLLGPSSLQSASP-RQSENAHDMILADRNYDSTSTRLDTIFRSLRNGRHSHRLNLWVDESQQSSGSSAATVPQGLEELLVSQLRRPVPEKTSDHNTSTVEPQTHGEGSQLQGSGPGATPEIPVVNSGNNENANVLPSS-AATDSSLNADGRPAVTDSLQGTDASNIHQQSVEMQFEQNDAAVRVIEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSSDRI--SDPQAARARRTNVALGNSTAVGGRDVPLHSVTEVSENSSREAEQDSTTAEQQMNSDGGSGSIDPAFLDALPEELRTEV 987
            Q RTTSIYSLLGR+G++   SRHPLLLGPSS   ++P RQS         DRN +STS+RLDTIFRSLR+GRH HRLNLW+D++QQ+ GSSAA VPQGLEE+L+SQLRRP+P+K  D +TS  EPQ + EGSQLQ S  GA PEIP  N+ N EN N  PSS AA +SS NAD RPA +DS+QGT AS  H QS EMQFEQNDA VR +EAVSQES GSGATLGESLRSLDVEIGSADGHDDGGERQGS+DR+   D Q  R RRTNV+ G+ST V GRD PLHSVTEVSENSSREA+QD+   EQQ+N++ GSGSIDPAFL+ALPEELR EV
Sbjct: 2297 QARTTSIYSLLGRNGDSVASSRHPLLLGPSSSSHSAPARQS---------DRNVESTSSRLDTIFRSLRSGRHGHRLNLWMDDNQQNGGSSAAVVPQGLEEILISQLRRPLPQK-PDQSTSPAEPQNNIEGSQLQESEAGARPEIPGENNVNTENINAPPSSTAAIESSGNADVRPAASDSVQGTHASITHPQSAEMQFEQNDAVVRDVEAVSQESGGSGATLGESLRSLDVEIGSADGHDDGGERQGSADRMPSGDQQGTRIRRTNVSFGHSTPVSGRDAPLHSVTEVSENSSREADQDAPAVEQQINTNAGSGSIDPAFLEALPEELRAEV 2619          
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Match: W9RQ49_9ROSA (E3 ubiquitin-protein ligase UPL2 OS=Morus notabilis GN=L484_001721 PE=4 SV=1)

HSP 1 Score: 425.246 bits (1092), Expect = 5.700e-131
Identity = 228/331 (68.88%), Postives = 261/331 (78.85%), Query Frame = 1
Query:    1 QGRTTSIYSLLGRSGENSTPSRHPLLLGPSSLQSASPRQSENAHDMILADRNYDSTSTRLDTIFRSLRNGRHSHRLNLWVDESQQSSGSSAATVPQGLEELLVSQLRRPVPEKTSDHNTSTVEPQTHGEGSQLQGSGPGATPEIPVVNSGNNENANVLPSSAATDSSLNADGRPAVTDSLQGTDASNIHQQSVEMQFEQNDAAVRVIEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSSDR--ISDPQAARARRTNVALGNSTAVGGRDVPLHSVTEVSENSSREAEQDSTTAEQQMNSDGGSGSIDPAFLDALPEELRTEV 987
            QGRTTSIYSLLGR+GE++ PSRHPLL+GPS L  A P QSEN  D+ L DRN ++TS+RLD +FRSLRNGRH HRLNLW+D++QQ  GS+A  VPQGLEELLVSQLRRP PEKTSD +T+ V P+   E  QLQ S  G  P++ V N+ N E+ NV   + A D+S +AD RPA T SLQ  D ++ H QSVEMQFE ND+AVR +EA+SQES GSGATLGESLRSLDVEIGSADGHDDGGERQGS+DR  + D  +AR RRTNV+ GNSTA   RDV LHSVTEVSENSSREAEQD    EQQMNSD GSG+IDPAFLDALPEELR EV
Sbjct: 2242 QGRTTSIYSLLGRTGESAAPSRHPLLVGPS-LHPAPPGQSENVRDIPLPDRNSENTSSRLDAVFRSLRNGRHGHRLNLWIDDNQQGGGSNAGVVPQGLEELLVSQLRRPTPEKTSDQDTAAV-PEDKAE-VQLQESEGGPRPDVSVENNVNAESRNVPAPTDAIDTSGSADVRPAETGSLQTADVASTHSQSVEMQFEHNDSAVRDVEAISQESGGSGATLGESLRSLDVEIGSADGHDDGGERQGSTDRMPLGDSHSARTRRTNVSFGNSTA-SARDVALHSVTEVSENSSREAEQDGPATEQQMNSDAGSGAIDPAFLDALPEELRAEV 2568          
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Match: B9SMZ3_RICCO (E3 ubiquitin protein ligase upl2, putative OS=Ricinus communis GN=RCOM_0482820 PE=4 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 2.088e-127
Identity = 224/331 (67.67%), Postives = 263/331 (79.46%), Query Frame = 1
Query:    1 QGRTTSIYSLLGRSGENSTPSRHPLLLGPSSLQSASPRQSENAHDMILADRNYDSTSTRLDTIFRSLRNGRHSHRLNLWVDESQQSSGSSAATVPQGLEELLVSQLRRPVPEKTSDHNTSTVEPQTHGEGSQLQGSGPGATPEIPVVNSGNNENANVL-PSSAATDSSLNADGRPAVTDSLQGTDASNIHQQSVEMQFEQNDAAVRVIEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSSDRIS-DPQAARARRTNVALGNSTAVGGRDVPLHSVTEVSENSSREAEQDSTTAEQQMNSDGGSGSIDPAFLDALPEELRTEV 987
            QGRTTSIYSLLGRSG+++ PSRHPLL+GPSS  SA+ RQ +NA D+  +DRN ++TS++LDTIFRSLRNGRH HRLNLW  +  Q SG S++++PQGLEELLVSQLRRP PEK+SD NTS+VEP ++GE +QL      A P++PV N+ NN ++N L PSS A   S N++ RP  +DS         H QS+EMQFEQNDA VR +EAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGS+DR+  DPQA R RRTNV+ GNSTAV GRD  LHSVTEV ENSSREA+QD  T EQ++  + GSGSIDPAFLDALPEELR EV
Sbjct: 2274 QGRTTSIYSLLGRSGDSAAPSRHPLLVGPSSSHSAASRQLDNARDVGFSDRNLENTSSQLDTIFRSLRNGRHGHRLNLW-SQDNQQSGGSSSSLPQGLEELLVSQLRRPAPEKSSDQNTSSVEPTSNGEAAQLHEPD-AAQPDVPVENNVNNGSSNALPPSSVAVAGSGNSEMRPVTSDS---------HSQSIEMQFEQNDATVRDVEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSADRMHLDPQATRTRRTNVSFGNSTAVSGRDASLHSVTEVPENSSREADQDGPTVEQEIGGEAGSGSIDPAFLDALPEELRAEV 2593          
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Match: A0A067LBL4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15911 PE=4 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 2.117e-124
Identity = 221/331 (66.77%), Postives = 251/331 (75.83%), Query Frame = 1
Query:    1 QGRTTSIYSLLGRSGENSTPSRHPLLLGPSSLQSASPRQSENAHDMILADRNYDSTSTRLDTIFRSLRNGRH-SHRLNLWVDESQQSSGSSAATVPQGLEELLVSQLRRPVPEKTSDHNTSTVEPQTHGEGSQLQGSGPGATPEIPVVNSGNNENANVLPSSAATDSSLNADGRPAVTDSLQGTDASNIHQQSVEMQFEQNDAAVRVIEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSSDRIS-DPQAARARRTNVALGNSTAVGGRDVPLHSVTEVSENSSREAEQDSTTAEQQMNSDGGSGSIDPAFLDALPEELRTEV 987
            QGRTTSIYSLLGRS +N+ PSRHPLL+GP+S  SAS RQSENA DM+ +DRN ++TS++LDTIFRSLRNGRH  HRLNLW D++QQ+ GS+ A+VPQGLEELLVSQLRRP PEK+ D + S  EP+++GE  QL G        I   N  N  +    PSS A   S N + RP  +DS           QSVEMQFEQNDA VR +EAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGS+DR+  DPQA R RRTNV+ GNST V GRD  LHSVTEVSENSSREA+QD    EQQ+  + GSGSIDPAFLDALPEELR EV
Sbjct: 1184 QGRTTSIYSLLGRSSDNAAPSRHPLLVGPASSHSASARQSENARDMVFSDRNLENTSSQLDTIFRSLRNGRHGHHRLNLWSDDNQQNGGST-ASVPQGLEELLVSQLRRPAPEKSLDQSASMTEPKSNGEVGQLPGQDAAQPGTIVENNVNNESSNVPPPSSVAEARSSNTEMRPVTSDS---------QSQSVEMQFEQNDAVVRDVEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSADRMHLDPQATRTRRTNVSFGNSTTVSGRDASLHSVTEVSENSSREADQDGPAVEQQIGGEAGSGSIDPAFLDALPEELRAEV 1504          
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Match: B9GN81_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s11110g PE=4 SV=2)

HSP 1 Score: 394.43 bits (1012), Expect = 3.584e-120
Identity = 216/330 (65.45%), Postives = 247/330 (74.85%), Query Frame = 1
Query:    1 QGRTTSIYSLLGRSGENSTPSRHPLLLGPSSLQSASPRQSENAHDMILADRNYDSTSTRLDTIFRSLRNGRHSHRLNLWVDESQQSSGSSAATVPQGLEELLVSQLRRPVPEKTSDHNTSTVEPQTHGEGSQLQGSGPGATPEIPVVNSGNNENANVLPSSAATDSSLNADGRPAVTDSLQGTDASNIHQQSVEMQFEQNDAAVRVIEAVSQESSGSGATLGESLRSLDVEIGSADGHDDGGERQGSSDRIS-DPQAARARRTNVALGNSTAVGGRDVPLHSVTEVSENSSREAEQDSTTAEQQMNSDGGSGSIDPAFLDALPEELRTEV 987
            QGRTTSIY+LLGR G+++ PSRHPLL+GPSS     PRQ+ENA DM+  DRN +STS +LDTIFRSLRNGRH +RLNLW+D++QQS GS+  +VP GLEELLVS LR+P  EK SD NT T EP+ +GE  QLQ       P+I V N+ N E +N     A T +S+  DG   V     G  AS  H QSVEMQ EQNDAA R +EAVSQESS SGATLGESLRSLDVEIGSADGHDDGGERQGS+DR+  DPQ+ R RRT+++ GNST   GRD  LHSVTEVSENSSREAEQD    EQQ+  D GSGSIDPAFLDALPEELR EV
Sbjct: 2247 QGRTTSIYNLLGRGGDSAAPSRHPLLVGPSSSNLGLPRQAENARDMVFTDRNLESTSLQLDTIFRSLRNGRHGNRLNLWMDDNQQSGGSN-VSVPTGLEELLVSHLRQPNTEKLSDPNTLTGEPKRNGENVQLQEPEADTHPDIQVENNANLEGSN-----APTTTSITIDGPGNVE---IGLAASESHTQSVEMQLEQNDAAARDVEAVSQESSESGATLGESLRSLDVEIGSADGHDDGGERQGSADRMPLDPQSTRIRRTSMSFGNSTLATGRDASLHSVTEVSENSSREAEQDGPAVEQQIGGDTGSGSIDPAFLDALPEELRAEV 2567          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067H0N2_CITSI5.384e-13269.67Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
W9RQ49_9ROSA5.700e-13168.88E3 ubiquitin-protein ligase UPL2 OS=Morus notabili... [more]
B9SMZ3_RICCO2.088e-12767.67E3 ubiquitin protein ligase upl2, putative OS=Rici... [more]
A0A067LBL4_JATCU2.117e-12466.77Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9GN81_POPTR3.584e-12065.45Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0012212 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0012212 ID=g.arboreum_cottongen_reftransV1_0012212; Name=g.arboreum_cottongen_reftransV1_0012212; organism=Gossypium arboreum; type=contig; length=988bp
CAAGGACGCACCACATCCATTTACAGTCTTTTGGGGCGGAGTGGTGAGAA
TTCAACCCCCTCGAGGCATCCTCTTTTATTGGGCCCTTCATCACTACAAT
CAGCCTCTCCAAGGCAATCAGAAAATGCCCATGATATGATTCTCGCAGAC
AGAAACTATGATAGCACCTCAACACGCTTGGATACTATTTTCCGGTCTCT
TAGGAATGGGCGTCACAGCCATCGTTTGAATTTGTGGGTTGATGAGAGCC
AGCAAAGCAGTGGGTCTAGTGCAGCTACTGTACCACAAGGCCTTGAAGAG
CTGCTTGTTTCCCAACTCAGGCGACCTGTCCCTGAGAAAACTTCTGATCA
CAACACATCAACCGTGGAACCTCAGACCCATGGTGAAGGTAGCCAGTTAC
AGGGATCAGGGCCTGGTGCTACACCCGAGATTCCAGTAGTAAACAGTGGA
AATAATGAAAATGCTAATGTGCTTCCATCTTCTGCAGCAACTGATAGCTC
TCTCAATGCTGATGGGAGACCTGCAGTTACTGATTCTCTGCAAGGAACAG
ATGCATCAAACATACATCAACAATCTGTTGAAATGCAATTTGAGCAGAAT
GATGCAGCTGTTCGTGTTATTGAAGCAGTGAGCCAAGAAAGTAGTGGTAG
TGGGGCCACTTTAGGGGAAAGCCTTCGAAGCCTAGATGTTGAAATTGGAA
GTGCAGATGGCCATGATGATGGTGGAGAAAGGCAAGGTTCTTCAGACAGA
ATATCTGATCCACAGGCTGCACGTGCAAGAAGAACAAATGTGGCTTTAGG
GAATTCAACAGCTGTTGGTGGGAGAGATGTACCTCTTCATAGTGTTACTG
AGGTTTCAGAGAATTCTAGTCGAGAAGCAGAGCAAGATAGTACCACTGCT
GAGCAGCAGATGAATAGTGATGGTGGTTCTGGATCAATTGATCCTGCATT
TTTAGATGCTCTCCCAGAGGAGTTGCGTACTGAAGTTC
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