g.arboreum_cottongen_reftransV1_0006091, g.arboreum_cottongen_reftransV1_0006091 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: B9IDF4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s00460g PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 5.174e-30 Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = 3 Query: 9 EEAVTRAVKEELGS------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSLCS 305 ++A+ RA+ EELGS + IV GSY++K+EERNS+SYPGLPARYVL+S + V GLP+ +F TEE EEY D++ R EKAVSV+KH+WKWV SDS+ S Sbjct: 187 KDAIFRAINEELGSILKDGNEVSINIVNGSYKEKVEERNSMSYPGLPARYVLYSADVEVNGLPDGEFCTEEAEEYPDSEEKRVAEKAVSVKKHFWKWVSSDSVHS 291
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: M5X0H2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011324mg PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 6.896e-30 Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 3 Query: 9 EEAVTRAVKEELGS-----------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299 E A RAV EELGS S +++IVPGSY KK+EER+S SYPGLPA YVLHSV+AW++GLPE +F TEE+ EY + +AVSV+KH+WKWV DS+ Sbjct: 106 ESAANRAVMEELGSILEGSVKDSGHSGILKIVPGSYEKKVEERHSASYPGLPACYVLHSVDAWLDGLPEGEFCTEEEHEYANCGEMSIAHEAVSVKKHFWKWVSLDSV 213
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A087GCX1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G421200 PE=4 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.074e-29 Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS-----------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299 T +EAV RA+KEELGS + +RI+PG+Y +++EERNSVSYPGLPARY LHSV+A V+GLPEEDF TEEK EY+ KAV+V++H+WKWV +S+ Sbjct: 183 TPDEAVFRAIKEELGSIFDCNDDDDISGQRIRILPGTYSRRVEERNSVSYPGLPARYALHSVDATVQGLPEEDFCTEEK-EYDGDSKEEYAGKAVTVKRHHWKWVSPESI 291
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A0D3DD29_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-29 Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS--------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKE-EYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299 T EEAV RAVKEELGS + V+I+PGSY +++EE+NS+SYPGLPARY LHSV+A V GLPEEDF TEE E + E + TR KAV+V++H+WKWV S+ Sbjct: 113 TPEEAVFRAVKEELGSIFSGEDDVVQRVKILPGSYSRRVEEKNSMSYPGLPARYALHSVDATVRGLPEEDFCTEENECDGETVEETRAAGKAVTVKRHHWKWVSPGSV 220
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A078CUK3_BRANA (BnaC07g29970D protein OS=Brassica napus GN=BnaC07g29970D PE=4 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.134e-29 Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 3 Query: 3 TTEEAVTRAVKEELGS--------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKE-EYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299 T EEAV RAV+EELGS + V+I+PGSY +++EE+NS+SYPGLPARY LHSV+A V GLPEEDF TEE E + E + TR KAV+V++H+WKWV S+ Sbjct: 114 TPEEAVFRAVREELGSIFSGEDDVVQRVKILPGSYSRRVEEKNSMSYPGLPARYALHSVDATVRGLPEEDFCTEEDECDGETVEETRAAGKAVTVKRHHWKWVSPGSV 221 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006091 ID=g.arboreum_cottongen_reftransV1_0006091; Name=g.arboreum_cottongen_reftransV1_0006091; organism=Gossypium arboreum; type=contig; length=332bpback to top |