g.arboreum_cottongen_reftransV1_0006091, g.arboreum_cottongen_reftransV1_0006091 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006091
Unique Nameg.arboreum_cottongen_reftransV1_0006091
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0006091:1..332 .
Chr3:49544545..49544876 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: B9IDF4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s00460g PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.174e-30
Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = 3
Query:    9 EEAVTRAVKEELGS------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSLCS 305
            ++A+ RA+ EELGS         + IV GSY++K+EERNS+SYPGLPARYVL+S +  V GLP+ +F TEE EEY D++  R  EKAVSV+KH+WKWV SDS+ S
Sbjct:  187 KDAIFRAINEELGSILKDGNEVSINIVNGSYKEKVEERNSMSYPGLPARYVLYSADVEVNGLPDGEFCTEEAEEYPDSEEKRVAEKAVSVKKHFWKWVSSDSVHS 291          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: M5X0H2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011324mg PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.896e-30
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 3
Query:    9 EEAVTRAVKEELGS-----------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299
            E A  RAV EELGS           S +++IVPGSY KK+EER+S SYPGLPA YVLHSV+AW++GLPE +F TEE+ EY +        +AVSV+KH+WKWV  DS+
Sbjct:  106 ESAANRAVMEELGSILEGSVKDSGHSGILKIVPGSYEKKVEERHSASYPGLPACYVLHSVDAWLDGLPEGEFCTEEEHEYANCGEMSIAHEAVSVKKHFWKWVSLDSV 213          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A087GCX1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G421200 PE=4 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.074e-29
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS-----------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKEEYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299
            T +EAV RA+KEELGS            + +RI+PG+Y +++EERNSVSYPGLPARY LHSV+A V+GLPEEDF TEEK EY+         KAV+V++H+WKWV  +S+
Sbjct:  183 TPDEAVFRAIKEELGSIFDCNDDDDISGQRIRILPGTYSRRVEERNSVSYPGLPARYALHSVDATVQGLPEEDFCTEEK-EYDGDSKEEYAGKAVTVKRHHWKWVSPESI 291          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A0D3DD29_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-29
Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS--------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKE-EYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299
            T EEAV RAVKEELGS         + V+I+PGSY +++EE+NS+SYPGLPARY LHSV+A V GLPEEDF TEE E + E  + TR   KAV+V++H+WKWV   S+
Sbjct:  113 TPEEAVFRAVKEELGSIFSGEDDVVQRVKILPGSYSRRVEEKNSMSYPGLPARYALHSVDATVRGLPEEDFCTEENECDGETVEETRAAGKAVTVKRHHWKWVSPGSV 220          
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Match: A0A078CUK3_BRANA (BnaC07g29970D protein OS=Brassica napus GN=BnaC07g29970D PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.134e-29
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 3
Query:    3 TTEEAVTRAVKEELGS--------SRVVRIVPGSYRKKLEERNSVSYPGLPARYVLHSVEAWVEGLPEEDFVTEEKE-EYEDADGTRRLEKAVSVRKHYWKWVCSDSL 299
            T EEAV RAV+EELGS         + V+I+PGSY +++EE+NS+SYPGLPARY LHSV+A V GLPEEDF TEE E + E  + TR   KAV+V++H+WKWV   S+
Sbjct:  114 TPEEAVFRAVREELGSIFSGEDDVVQRVKILPGSYSRRVEEKNSMSYPGLPARYALHSVDATVRGLPEEDFCTEEDECDGETVEETRAAGKAVTVKRHHWKWVSPGSV 221          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9IDF4_POPTR5.174e-3057.14Uncharacterized protein OS=Populus trichocarpa GN=... [more]
M5X0H2_PRUPE6.896e-3055.56Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A087GCX1_ARAAL1.074e-2955.45Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
A0A0D3DD29_BRAOL1.153e-2958.33Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A078CUK3_BRANA5.134e-2957.41BnaC07g29970D protein OS=Brassica napus GN=BnaC07g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006091 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36395FAMILY NOT NAMEDcoord: 2..69

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006091 ID=g.arboreum_cottongen_reftransV1_0006091; Name=g.arboreum_cottongen_reftransV1_0006091; organism=Gossypium arboreum; type=contig; length=332bp
AAACTACCGAAGAAGCAGTGACTCGAGCAGTAAAAGAGGAGCTTGGTTCT
TCCAGGGTCGTGAGGATTGTGCCAGGGTCTTATCGAAAGAAACTGGAGGA
GCGCAATTCGGTCTCGTATCCAGGGTTGCCGGCGCGTTATGTTTTACATT
CGGTAGAGGCGTGGGTAGAAGGTTTGCCTGAGGAAGATTTTGTTACTGAA
GAAAAGGAAGAGTACGAGGATGCTGATGGGACAAGGAGATTGGAGAAAGC
GGTGTCTGTAAGGAAGCATTATTGGAAATGGGTTTGTTCTGATTCTCTTT
GCTCCTGAATGGATGCGAAATTTTGGTTGAAT
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