g.arboreum_cottongen_reftransV1_0014686, g.arboreum_cottongen_reftransV1_0014686 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014686
Unique Nameg.arboreum_cottongen_reftransV1_0014686
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0014686:1..300 .
Chr2:41386991..41387554 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: W9STL9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019432 PE=4 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.532e-7
Identity = 67/101 (66.34%), Postives = 75/101 (74.26%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX--XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRD+S R    +GQVGTRKSPQ+GA   G       T   GAK+G SSR N+G RAST GKKG GSGKS+K DSANGD EDGKSK+ +YEGPD
Sbjct:  117 DPDVWRPPSRDSSRRPAR-SGQVGTRKSPQEGAWARGGTTRTGTTARGGAKSGASSRVNSGVRASTAGKKGAGSGKSSKADSANGDTEDGKSKKREYEGPD 216
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: M5WR05_PRUPE (Katanin p60 ATPase-containing subunit A1 OS=Prunus persica GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.587e-7
Identity = 73/100 (73.00%), Postives = 77/100 (77.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDT+ RRP +AG  G RKSPQD        TRT   GRGAKAGGSSR N+  R S TGKKGTGS KS+K DSANGDAEDGKSKRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTTGRRPGKAGPGGMRKSPQDATWARGSATRTAPPGRGAKAGGSSRANSAVRTSATGKKGTGSIKSSKADSANGDAEDGKSKRSQYEGPD 216
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: U5GM43_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s05650g PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 7.116e-7
Identity = 78/100 (78.00%), Postives = 84/100 (84.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDT+SRRP RA QVG RKSPQDGA     +TRTGTTGRGAK   SSR N+G RASTTGKKGTG+GKS +GDSANGDAEDGK +R QYEGPD
Sbjct:  124 DPDVWRPPSRDTTSRRPTRASQVGLRKSPQDGAWARGASTRTGTTGRGAKTAASSRVNSGVRASTTGKKGTGTGKSGRGDSANGDAEDGK-RRPQYEGPD 222
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: U5GIG3_POPTR (Katanin p60 ATPase-containing subunit A1 OS=Populus trichocarpa GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 7.562e-7
Identity = 78/100 (78.00%), Postives = 84/100 (84.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDT+SRRP RA QVG RKSPQDGA     +TRTGTTGRGAK   SSR N+G RASTTGKKGTG+GKS +GDSANGDAEDGK +R QYEGPD
Sbjct:   62 DPDVWRPPSRDTTSRRPTRASQVGLRKSPQDGAWARGASTRTGTTGRGAKTAASSRVNSGVRASTTGKKGTGTGKSGRGDSANGDAEDGK-RRPQYEGPD 160
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: B9GWQ4_POPTR (Katanin p60 ATPase-containing subunit A1 OS=Populus trichocarpa GN=KATNA1 PE=3 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 7.903e-7
Identity = 78/100 (78.00%), Postives = 84/100 (84.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDT+SRRP RA QVG RKSPQDGA     +TRTGTTGRGAK   SSR N+G RASTTGKKGTG+GKS +GDSANGDAEDGK +R QYEGPD
Sbjct:  124 DPDVWRPPSRDTTSRRPTRASQVGLRKSPQDGAWARGASTRTGTTGRGAKTAASSRVNSGVRASTTGKKGTGTGKSGRGDSANGDAEDGK-RRPQYEGPD 222
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 9.056e-7
Identity = 64/100 (64.00%), Postives = 73/100 (73.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPP+RD +SRRPARAGQ GTRKSPQDGA      TRTG   RG + G +S++  GAR+ST GKKG  S  +   +S NGDAEDGKSKR  YEGPD
Sbjct:  120 DPDVWRPPTRDVTSRRPARAGQTGTRKSPQDGAWARGPTTRTGPASRGGRGGATSKSTAGARSSTAGKKGAASKSNKA-ESMNGDAEDGKSKRGLYEGPD 218
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
W9STL9_9ROSA4.532e-766.34Uncharacterized protein OS=Morus notabilis GN=L484... [more]
M5WR05_PRUPE5.587e-773.00Katanin p60 ATPase-containing subunit A1 OS=Prunus... [more]
U5GM43_POPTR7.116e-778.00Uncharacterized protein OS=Populus trichocarpa GN=... [more]
U5GIG3_POPTR7.562e-778.00Katanin p60 ATPase-containing subunit A1 OS=Populu... [more]
B9GWQ4_POPTR7.903e-778.00Katanin p60 ATPase-containing subunit A1 OS=Populu... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KTNA1_ARATH9.056e-764.00Katanin p60 ATPase-containing subunit A1 OS=Arabid... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014686 ID=g.arboreum_cottongen_reftransV1_0014686; Name=g.arboreum_cottongen_reftransV1_0014686; organism=Gossypium arboreum; type=contig; length=300bp
GGATCAGGTCCCTCATACTGGGACCTCTTAGATTTTCCATCTTCAGCATC
ACCATTTGCCGAATCTCCTTTTGTAGATTTCCCTGAGCCAGTACCCTTCT
TTCCAGTGGTAGATGCTCTGGCCCCTGTGTTAGTTCTACTTGAACCACCT
GCCTTTGCACCTCGTCCAGTTGTACCTGTTCTGGTATTGCCACGACCCCA
AGCCCCATCTTGTGGAGATTTCCTCGTGCCCACTTGACCAGCCCTAGCAG
GTCTTCTACTTGAAGTGTCCCGACTTGGAGGCCTCCACACATCAGGATCA
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