g.arboreum_cottongen_reftransV1_0014686, g.arboreum_cottongen_reftransV1_0014686 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014686
Unique Nameg.arboreum_cottongen_reftransV1_0014686
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length300
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr2chromosomeg.arboreum_cottongen_reftransV1_0014686:1..300 .
Chr2:41386991..41387554 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A0D2SUX6_GOSRA (Katanin p60 ATPase-containing subunit A1 OS=Gossypium raimondii GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.006e-10
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG  GRGNTRT  TGRGAKAG SSRTNTG R STTGKKGTGSGKS+KGDSANGDAEDGK KRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKSSKGDSANGDAEDGKLKRSQYEGPD 215          
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: M4M8Z4_GOSAR (Katanin p60 ATPase-containing subunit A1 OS=Gossypium arboreum GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.006e-10
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG  GRGNTRT  TGRGAKAG SSRTNTG R STTGKKGTGSGKS+KGDSANGDAEDGK KRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKSSKGDSANGDAEDGKLKRSQYEGPD 215          
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: Q7XJI8_GOSBA (Katanin p60 ATPase-containing subunit A1 OS=Gossypium barbadense GN=KTN1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.089e-10
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG  GRGNTRT  TGRGAKAG SSRTNTG R STTGKKGTGSGKS+KGDSANGDAEDGK KRSQYEGPD
Sbjct:  118 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKSSKGDSANGDAEDGKLKRSQYEGPD 216          
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: Q6WG31_GOSHI (Katanin p60 ATPase-containing subunit A1 OS=Gossypium hirsutum GN=GhKTN1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.129e-10
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG  GRGNTRT  TGRGAKAG SSRTNTG R STTGKKGTGSGKS+KGDSANGDAEDGK KRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKSSKGDSANGDAEDGKLKRSQYEGPD 215          
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A5ASP4_VITVI (Katanin p60 ATPase-containing subunit A1 OS=Vitis vinifera GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.541e-9
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDT+SRR AR+GQVG RK+ QDG W RG+TR GT  RG K+G SSRT++G RASTTG+KG+    + K DSANGDAEDGKSKR+QYEGPD
Sbjct:  118 DPDVWRPPSRDTTSRRSARSGQVGMRKTSQDGTWPRGSTRGGTAPRGGKSGASSRTHSGVRASTTGRKGSSKSNTDKADSANGDAEDGKSKRAQYEGPD 216          
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: D7U0Q4_VITVI (Katanin p60 ATPase-containing subunit A1 OS=Vitis vinifera GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.845e-9
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDT+SRR AR+GQVG RK+ QDG W RG+TR G   RG K+G SSRT++G RASTTG+KG+    + K DSANGDAEDGKSKR+QYEGPD
Sbjct:  118 DPDVWRPPSRDTTSRRSARSGQVGMRKTSQDGTWPRGSTRGGAAPRGGKSGASSRTHSGVRASTTGRKGSSKSNTDKADSANGDAEDGKSKRAQYEGPD 216          
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A059AJ28_EUCGR (Katanin p60 ATPase-containing subunit A1 OS=Eucalyptus grandis GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.158e-9
Identity = 74/100 (74.00%), Postives = 79/100 (79.00%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRD + RRPARAGQVG RKSPQDG        R G   RGAKAGGSS++NTG RAS+TGKKGT SGKS K DS NGDAEDGKSK+ QYEGPD
Sbjct:  118 DPDVWRPPSRDPTGRRPARAGQVGMRKSPQDGTWARGATARAGAAARGAKAGGSSKSNTGVRASSTGKKGTASGKSAKADSGNGDAEDGKSKKGQYEGPD 217          
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A067KLP8_JATCU (Katanin p60 ATPase-containing subunit A1 OS=Jatropha curcas GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.222e-8
Identity = 80/100 (80.00%), Postives = 86/100 (86.00%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDT+SRRPAR GQVG RKSPQDG     G+TRTGTTGR  K+GGSSR N+G RASTTGKKGTG+GK  KGDSANGDAEDGKSK+ QYEGPD
Sbjct:  117 DPDVWRPPSRDTTSRRPARPGQVGMRKSPQDGNWGRGGSTRTGTTGRAQKSGGSSRVNSGVRASTTGKKGTGAGKPGKGDSANGDAEDGKSKKGQYEGPD 216          
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: V4SN76_9ROSI (Katanin p60 ATPase-containing subunit A1 OS=Citrus clementina GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.940e-8
Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTSSRRPARAGQVG RKSPQDGA       RTGT+ RG KA G SR NTG RASTTGKKGTGSGKS K DSANGD+EDGKSK+ +YEGPD
Sbjct:  118 DPDVWRPPSRDTSSRRPARAGQVGMRKSPQDGAWARGATNRTGTSSRGGKAAGPSRGNTGVRASTTGKKGTGSGKSGKADSANGDSEDGKSKKKEYEGPD 217          
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A067EST1_CITSI (Katanin p60 ATPase-containing subunit A1 OS=Citrus sinensis GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 6.260e-8
Identity = 78/100 (78.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDT SRRPARAGQVG RKSPQDGA       RTGT+ RG KA G SR NTG RASTTGKKGTGSGKS K DSANGD+EDGKSK+ +YEGPD
Sbjct:  118 DPDVWRPPSRDTPSRRPARAGQVGMRKSPQDGAWARGATNRTGTSSRGGKAAGPSRGNTGVRASTTGKKGTGSGKSGKADSANGDSEDGKSKKKEYEGPD 217          
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 9.056e-7
Identity = 64/100 (64.00%), Postives = 73/100 (73.00%), Query Frame = -2
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPP+RD +SRRPARAGQ GTRKSPQDGA      TRTG   RG + G +S++  GAR+ST GKKG  S  +   +S NGDAEDGKSKR  YEGPD
Sbjct:  120 DPDVWRPPTRDVTSRRPARAGQTGTRKSPQDGAWARGPTTRTGPASRGGRGGATSKSTAGARSSTAGKKGAASKSNKA-ESMNGDAEDGKSKRGLYEGPD 218          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2SUX6_GOSRA1.006e-1086.87Katanin p60 ATPase-containing subunit A1 OS=Gossyp... [more]
M4M8Z4_GOSAR1.006e-1086.87Katanin p60 ATPase-containing subunit A1 OS=Gossyp... [more]
Q7XJI8_GOSBA1.089e-1086.87Katanin p60 ATPase-containing subunit A1 OS=Gossyp... [more]
Q6WG31_GOSHI1.129e-1086.87Katanin p60 ATPase-containing subunit A1 OS=Gossyp... [more]
A5ASP4_VITVI1.541e-971.72Katanin p60 ATPase-containing subunit A1 OS=Vitis ... [more]
D7U0Q4_VITVI1.845e-970.71Katanin p60 ATPase-containing subunit A1 OS=Vitis ... [more]
A0A059AJ28_EUCGR6.158e-974.00Katanin p60 ATPase-containing subunit A1 OS=Eucaly... [more]
A0A067KLP8_JATCU2.222e-880.00Katanin p60 ATPase-containing subunit A1 OS=Jatrop... [more]
V4SN76_9ROSI4.940e-879.00Katanin p60 ATPase-containing subunit A1 OS=Citrus... [more]
A0A067EST1_CITSI6.260e-878.00Katanin p60 ATPase-containing subunit A1 OS=Citrus... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KTNA1_ARATH9.056e-764.00Katanin p60 ATPase-containing subunit A1 OS=Arabid... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014686 ID=g.arboreum_cottongen_reftransV1_0014686; Name=g.arboreum_cottongen_reftransV1_0014686; organism=Gossypium arboreum; type=contig; length=300bp
GGATCAGGTCCCTCATACTGGGACCTCTTAGATTTTCCATCTTCAGCATC
ACCATTTGCCGAATCTCCTTTTGTAGATTTCCCTGAGCCAGTACCCTTCT
TTCCAGTGGTAGATGCTCTGGCCCCTGTGTTAGTTCTACTTGAACCACCT
GCCTTTGCACCTCGTCCAGTTGTACCTGTTCTGGTATTGCCACGACCCCA
AGCCCCATCTTGTGGAGATTTCCTCGTGCCCACTTGACCAGCCCTAGCAG
GTCTTCTACTTGAAGTGTCCCGACTTGGAGGCCTCCACACATCAGGATCA
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