g.arboreum_cottongen_reftransV1_0014686, g.arboreum_cottongen_reftransV1_0014686 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A0D2SUX6_GOSRA (Katanin p60 ATPase-containing subunit A1 OS=Gossypium raimondii GN=KATNA1 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.006e-10 Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG GRGNTRT TGRGAKAG SSRTNTG R STTGKKGTGSGKS+KGDSANGDAEDGK KRSQYEGPD Sbjct: 117 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKSSKGDSANGDAEDGKLKRSQYEGPD 215
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: M4M8Z4_GOSAR (Katanin p60 ATPase-containing subunit A1 OS=Gossypium arboreum GN=KATNA1 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.006e-10 Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG GRGNTRT TGRGAKAG SSRTNTG R STTGKKGTGSGKS+KGDSANGDAEDGK KRSQYEGPD Sbjct: 117 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKSSKGDSANGDAEDGKLKRSQYEGPD 215
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: Q7XJI8_GOSBA (Katanin p60 ATPase-containing subunit A1 OS=Gossypium barbadense GN=KTN1 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.089e-10 Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG GRGNTRT TGRGAKAG SSRTNTG R STTGKKGTGSGKS+KGDSANGDAEDGK KRSQYEGPD Sbjct: 118 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKSSKGDSANGDAEDGKLKRSQYEGPD 216
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: Q6WG31_GOSHI (Katanin p60 ATPase-containing subunit A1 OS=Gossypium hirsutum GN=GhKTN1 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.129e-10 Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG GRGNTRT TGRGAKAG SSRTNTG R STTGKKGTGSGKS+KGDSANGDAEDGK KRSQYEGPD Sbjct: 117 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKSSKGDSANGDAEDGKLKRSQYEGPD 215
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A5ASP4_VITVI (Katanin p60 ATPase-containing subunit A1 OS=Vitis vinifera GN=KATNA1 PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.541e-9 Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPPSRDT+SRR AR+GQVG RK+ QDG W RG+TR GT RG K+G SSRT++G RASTTG+KG+ + K DSANGDAEDGKSKR+QYEGPD Sbjct: 118 DPDVWRPPSRDTTSRRSARSGQVGMRKTSQDGTWPRGSTRGGTAPRGGKSGASSRTHSGVRASTTGRKGSSKSNTDKADSANGDAEDGKSKRAQYEGPD 216
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: D7U0Q4_VITVI (Katanin p60 ATPase-containing subunit A1 OS=Vitis vinifera GN=KATNA1 PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.845e-9 Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPPSRDT+SRR AR+GQVG RK+ QDG W RG+TR G RG K+G SSRT++G RASTTG+KG+ + K DSANGDAEDGKSKR+QYEGPD Sbjct: 118 DPDVWRPPSRDTTSRRSARSGQVGMRKTSQDGTWPRGSTRGGAAPRGGKSGASSRTHSGVRASTTGRKGSSKSNTDKADSANGDAEDGKSKRAQYEGPD 216
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A059AJ28_EUCGR (Katanin p60 ATPase-containing subunit A1 OS=Eucalyptus grandis GN=KATNA1 PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 6.158e-9 Identity = 74/100 (74.00%), Postives = 79/100 (79.00%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPPSRD + RRPARAGQVG RKSPQDG R G RGAKAGGSS++NTG RAS+TGKKGT SGKS K DS NGDAEDGKSK+ QYEGPD Sbjct: 118 DPDVWRPPSRDPTGRRPARAGQVGMRKSPQDGTWARGATARAGAAARGAKAGGSSKSNTGVRASSTGKKGTASGKSAKADSGNGDAEDGKSKKGQYEGPD 217
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A067KLP8_JATCU (Katanin p60 ATPase-containing subunit A1 OS=Jatropha curcas GN=KATNA1 PE=3 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 2.222e-8 Identity = 80/100 (80.00%), Postives = 86/100 (86.00%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPPSRDT+SRRPAR GQVG RKSPQDG G+TRTGTTGR K+GGSSR N+G RASTTGKKGTG+GK KGDSANGDAEDGKSK+ QYEGPD Sbjct: 117 DPDVWRPPSRDTTSRRPARPGQVGMRKSPQDGNWGRGGSTRTGTTGRAQKSGGSSRVNSGVRASTTGKKGTGAGKPGKGDSANGDAEDGKSKKGQYEGPD 216
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: V4SN76_9ROSI (Katanin p60 ATPase-containing subunit A1 OS=Citrus clementina GN=KATNA1 PE=3 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 4.940e-8 Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPPSRDTSSRRPARAGQVG RKSPQDGA RTGT+ RG KA G SR NTG RASTTGKKGTGSGKS K DSANGD+EDGKSK+ +YEGPD Sbjct: 118 DPDVWRPPSRDTSSRRPARAGQVGMRKSPQDGAWARGATNRTGTSSRGGKAAGPSRGNTGVRASTTGKKGTGSGKSGKADSANGDSEDGKSKKKEYEGPD 217
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A067EST1_CITSI (Katanin p60 ATPase-containing subunit A1 OS=Citrus sinensis GN=KATNA1 PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 6.260e-8 Identity = 78/100 (78.00%), Postives = 82/100 (82.00%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPPSRDT SRRPARAGQVG RKSPQDGA RTGT+ RG KA G SR NTG RASTTGKKGTGSGKS K DSANGD+EDGKSK+ +YEGPD Sbjct: 118 DPDVWRPPSRDTPSRRPARAGQVGMRKSPQDGAWARGATNRTGTSSRGGKAAGPSRGNTGVRASTTGKKGTGSGKSGKADSANGDSEDGKSKKKEYEGPD 217
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 9.056e-7 Identity = 64/100 (64.00%), Postives = 73/100 (73.00%), Query Frame = -2 Query: 3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299 DPDVWRPP+RD +SRRPARAGQ GTRKSPQDGA TRTG RG + G +S++ GAR+ST GKKG S + +S NGDAEDGKSKR YEGPD Sbjct: 120 DPDVWRPPTRDVTSRRPARAGQTGTRKSPQDGAWARGPTTRTGPASRGGRGGATSKSTAGARSSTAGKKGAASKSNKA-ESMNGDAEDGKSKRGLYEGPD 218 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0014686 ID=g.arboreum_cottongen_reftransV1_0014686; Name=g.arboreum_cottongen_reftransV1_0014686; organism=Gossypium arboreum; type=contig; length=300bpback to top |