g.arboreum_cottongen_reftransV1_0011879, g.arboreum_cottongen_reftransV1_0011879 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011879
Unique Nameg.arboreum_cottongen_reftransV1_0011879
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1970
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0011879:1..1970 .
Chr11:61828684..61834093 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy TrEMBL
Match: A0A075BNV7_ROSRU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rosa rugosa GN=DXR PE=2 SV=1)

HSP 1 Score: 783.097 bits (2021), Expect = 0.000e+0
Identity = 400/474 (84.39%), Postives = 432/474 (91.14%), Query Frame = 2
Query:  182 MALNLVSPPEIHXXXXXXXXXXXXXXXXXPGGFVLKK-DCGTTFGRKVQCSXXXXXXXXXXXXXXXXXXGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRIVGLAAGSNVTLLAHQVKTFKPQLVAVRNESLVNELKDALADMEQKPEIIPGEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQGLPECALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMSLAYAAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCEKHQEEYVATPSLEEIIHYDLWARDYAASIQQSSGLSPVLA 1600
            MALNL+SP EI +ISFL STKS+   KL PGGF L++ DC T  GR++QCSAQAP PP           GR+TWDGPKPIS+VGSTGSIGTQTLDIVAENP+KFR+V LAAGSNVTLL  QVK FKP+LVAVRNESL+NELK+AL+ +E KPEIIPGEQGVIEVARHPDAV+VVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKH VKILPADSEHSAIFQCIQGLPE ALRRIILTASGGAFRD PV+KLK+VKVADALKHPNW+MGKKITVDSATLFNKGLEVIEAHYL+GAEYDDIEIVIHPQSIIHSM+ETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSE+TWPRLDLCKLGSLTFKAPDNVKYPSM LAY+AGRAGGTMTGVLSAANEKAVE+FIDEKISYLDIFKVVELTC KH+ E V +PSLEEI+HYDLWARDYAA++Q S+  +PV A
Sbjct:    1 MALNLLSPAEIKAISFLDSTKSTHLPKL-PGGFALRRRDCRTVIGRRIQCSAQAPPPPAWPGSAFPEP-GRRTWDGPKPISVVGSTGSIGTQTLDIVAENPEKFRVVALAAGSNVTLLVDQVKRFKPKLVAVRNESLLNELKEALSGLEDKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLYGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSMDLAYSAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCAKHRAELVTSPSLEEIVHYDLWARDYAANLQSSTSSTPVFA 472          
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy TrEMBL
Match: A0A059P9W8_ROSHC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rosa hybrid cultivar GN=DXR PE=2 SV=1)

HSP 1 Score: 783.097 bits (2021), Expect = 0.000e+0
Identity = 400/474 (84.39%), Postives = 432/474 (91.14%), Query Frame = 2
Query:  182 MALNLVSPPEIHXXXXXXXXXXXXXXXXXPGGFVLKK-DCGTTFGRKVQCSXXXXXXXXXXXXXXXXXXGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRIVGLAAGSNVTLLAHQVKTFKPQLVAVRNESLVNELKDALADMEQKPEIIPGEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQGLPECALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMSLAYAAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCEKHQEEYVATPSLEEIIHYDLWARDYAASIQQSSGLSPVLA 1600
            MALNL+SP EI +ISFL STKS+   KL PGGF L++ DC T  GR++QCSAQAP PP           GR+TWDGPKPIS+VGSTGSIGTQTLDIVAENP+KFR+V LAAGSNVTLL  QVK FKP+LVAVRNESL+NELK+AL+ +E KPEIIPGEQGVIEVARHPDAV+VVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKH VKILPADSEHSAIFQCIQGLPE ALRRIILTASGGAFRD PV+KLK+VKVADALKHPNW+MGKKITVDSATLFNKGLEVIEAHYL+GAEYDDIEIVIHPQSIIHSM+ETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSE+TWPRLDLCKLGSLTFKAPDNVKYPSM LAY+AGRAGGTMTGVLSAANEKAVE+FIDEKISYLDIFKVVELTC KH+ E V +PSLEEI+HYDLWARDYAA++Q S+  +PV A
Sbjct:    1 MALNLLSPAEIKAISFLDSTKSTHLPKL-PGGFALRRRDCRTVIGRRIQCSAQAPPPPAWPGSAFPEP-GRRTWDGPKPISVVGSTGSIGTQTLDIVAENPEKFRVVALAAGSNVTLLVDQVKRFKPKLVAVRNESLLNELKEALSGLEDKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLYGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSMDLAYSAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCAKHRAELVTSPSLEEIVHYDLWARDYAANLQSSTSSTPVFA 472          
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy TrEMBL
Match: V7CB56_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G200300g PE=3 SV=1)

HSP 1 Score: 782.711 bits (2020), Expect = 0.000e+0
Identity = 402/474 (84.81%), Postives = 435/474 (91.77%), Query Frame = 2
Query:  182 MALNLVSPPEIHXXXXXXXXXXXXXXXXXPGGFVLKK-DCGTTFGRKVQCSXXXXXXXXXXXXXXXXXXGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRIVGLAAGSNVTLLAHQVKTFKPQLVAVRNESLVNELKDALADMEQKPEIIPGEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQGLPECALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMSLAYAAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCEKHQEEYVATPSLEEIIHYDLWARDYAASIQQSSGLSPVLA 1600
            MALN+ SP E+ S+ F  S KS+  +  FPGGF  KK +CG    R+V CS +AP PPPAWPGRAFP+   KTW+GPKPISIVGSTGSIGTQTLDIVAENPDKF++V LAAGSNVTLLA Q+KTFKPQLVAVRNESL+ EL++AL D+E KPEIIPGEQG++EVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA KH VKILPADSEHSAIFQCIQGLPE ALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSM+ETQDSSVLAQLGWPDMRLPILYT+SWP+R+YCSE+TWPRLDLCKLGSLTFK PDNVKYPSM+LAYAAGRAGGTMTGVLSAANEKAVE+FIDEKISYLDIFKVVELTCEKHQ E +++PSLEEIIHYDLWAR YAA++Q SS  +P+LA
Sbjct:    1 MALNISSPAEVKSLFFSDSFKSNCLTAKFPGGFAFKKKECG----RRVSCSVKAPPPPPAWPGRAFPEQVGKTWEGPKPISIVGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQIKTFKPQLVAVRNESLIAELEEALHDVEHKPEIIPGEQGIVEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAQKHNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPDRVYCSEVTWPRLDLCKLGSLTFKNPDNVKYPSMNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCEKHQNELLSSPSLEEIIHYDLWARKYAATLQDSSSFTPILA 470          
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy TrEMBL
Match: W8NXM5_JATCU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Jatropha curcas GN=JCGZ_11476 PE=2 SV=1)

HSP 1 Score: 782.711 bits (2020), Expect = 0.000e+0
Identity = 407/473 (86.05%), Postives = 433/473 (91.54%), Query Frame = 2
Query:  182 MALNLVSPPEIHXXXXXXXXXXXXXXXXXPGGFVLKKDCGTTFGRKVQCSXXXXXXXXXXXXXXXXXXGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRIVGLAAGSNVTLLAHQVKTFKPQLVAVRNESLVNELKDALADMEQKPEIIPGEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQGLPECALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMSLAYAAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCEKHQEEYVATPSLEEIIHYDLWARDYAASIQQSSGLSPVLA 1600
            MALNL+SP EI +ISFL STKS+   KL PG F LK+      GRKVQCSAQ P P         P  GRKTWDGPKPISIVGSTGSIGTQTLDIVAENP+KF++V LAAGSNVTLLA QVKTFKPQLVAVRNESLV+ELK+ALAD+E+KPEIIPGEQG++EVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDI LANKETLIAGGPFVLPLAHK+ VKILPADSEHSAIFQCIQGLPE ALRRIILTASGGAFRDLPV+KLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGA+YD+IEIVIHPQSIIHSMVET+DSSVLAQLGWPDMRLPILYTMSWP+RI CSEITWPRLDLCK GSLTFKAPDNVKYPSM LAYAAGRAGGTMTGVLSAANEKAVE+FIDEKISYLDIFK+VELTC KH+ E V++PSLEEIIHYDLWARDYAA++Q SSGLSPVLA
Sbjct:    1 MALNLLSPAEIKAISFLDSTKSNQLPKL-PGSFSLKR---KDLGRKVQCSAQPPPPAWPGRAFPEP--GRKTWDGPKPISIVGSTGSIGTQTLDIVAENPNKFKVVALAAGSNVTLLADQVKTFKPQLVAVRNESLVDELKEALADVEEKPEIIPGEQGIVEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDICLANKETLIAGGPFVLPLAHKYNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDLPVEKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGADYDNIEIVIHPQSIIHSMVETEDSSVLAQLGWPDMRLPILYTMSWPDRISCSEITWPRLDLCKQGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKIVELTCNKHRAELVSSPSLEEIIHYDLWARDYAANLQPSSGLSPVLA 467          
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy TrEMBL
Match: Q947C3_SOLLC (1-deoxy-D-xylulose-5-phosphate reductoisomerase OS=Solanum lycopersicum GN=DXR PE=2 SV=1)

HSP 1 Score: 782.326 bits (2019), Expect = 0.000e+0
Identity = 403/475 (84.84%), Postives = 431/475 (90.74%), Query Frame = 2
Query:  182 MALNLVSPPEIHXXXXXXXXXXXXXXX--XXPGGF-VLKKDCGTTFGRKVQCSXXXXXXXXXXXXXXXXXXGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRIVGLAAGSNVTLLAHQVKTFKPQLVAVRNESLVNELKDALADMEQKPEIIPGEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQGLPECALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMSLAYAAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCEKHQEEYVATPSLEEIIHYDLWARDYAASIQQSSGLSPVL 1597
            MALNL+SP EI SISFL ++KSS       F GG  + +K+C   F ++VQCSAQ P PP           GR++WDGPKPISIVGSTGSIGTQTLDIVAENPDKFR+V LAAGSNVTLLA QVKTF+P+LVAVRNESLV ELKDALADME KPEIIPGEQGVIEVARHPDAV+VVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP AHKHKVKILPADSEHSAIFQCIQGLPE ALRRIILTASGGAFRD PV+KLK+VKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYD+IEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYT+SWP+R+YCSEITWPRLDLCKLGSLTFKAPDNVKYPSM LAY+AGRAGGTMTGVLSAANEKAVELFI E+ISYLDIFK+VELTC KH+EE V++PSLEEIIHYDLWARDYAAS++ SSGLSP L
Sbjct:    1 MALNLLSPAEIKSISFLDNSKSSYNLSHLKFTGGLSIRRKECSGAFAKRVQCSAQLPPPPAWPGRAVAEP-GRQSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVKTFRPKLVAVRNESLVEELKDALADMEDKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPPAHKHKVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTLSWPDRVYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMDLAYSAGRAGGTMTGVLSAANEKAVELFISERISYLDIFKIVELTCAKHREELVSSPSLEEIIHYDLWARDYAASLEPSSGLSPAL 474          
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy Swiss-Prot
Match: DXR_SYNS3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9311) GN=dxr PE=3 SV=1)

HSP 1 Score: 467.618 bits (1202), Expect = 1.253e-157
Identity = 240/398 (60.30%), Postives = 294/398 (73.87%), Query Frame = 2
Query:  410 KPISIVGSTGSIGTQTLDIVAENPDKFRIVGLAAGSNVTLLAHQVKTFKPQLVAVRNESLVNELKDALADM--EQKPEIIP----GEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQG------------LPECALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMSLAYAAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCEKHQEEYVATPSLEEIIHYDLWAR 1549
            K IS++GSTGSIGTQTL IV + PD+FR+V L+AG N++LL  Q++  +P +VA+ +++L+ ELKD L  +  + +PE +P    G +G+  VA    A  VVTGIVGCAGL PT+AAI AGKD+A+ANKETLIA GP VLP   K   ++LPADSEHSAIFQC+QG            +P   LRRI LTASGGAFRD     L+   VADA  HPNW+MGKKITVDSA+L NKGLEVIEAHYLFG +YD IEIVIHPQSIIHSMVE  DSSVLAQLGWPDM+LPILY MSWP R+   E  W RLDL ++G L+F+APD  KYP M LAYAAGRAGGTM  VL+AANE+AV  F++EKI +LDI K++E  CE+H+ +  A P L++++  D WAR
Sbjct:    2 KAISVLGSTGSIGTQTLAIVEDFPDQFRVVALSAGRNLSLLVSQIQRHRPDVVALADQALLAELKDRLMALPADTRPEPLPHLVGGPEGLDVVASWDSADLVVTGIVGCAGLLPTLAAIRAGKDLAVANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWSDTARLSTGVPTPGLRRIQLTASGGAFRDWSAADLEKATVADATSHPNWSMGKKITVDSASLMNKGLEVIEAHYLFGLDYDHIEIVIHPQSIIHSMVELADSSVLAQLGWPDMKLPILYCMSWPSRL---ETPWRRLDLTEVGQLSFRAPDPAKYPCMDLAYAAGRAGGTMPAVLNAANEEAVAQFLEEKIHFLDIPKMIEGACEQHKPDLAANPCLDDVLAVDQWAR 396          
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 464.922 bits (1195), Expect = 1.915e-156
Identity = 236/398 (59.30%), Postives = 291/398 (73.12%), Query Frame = 2
Query:  410 KPISIVGSTGSIGTQTLDIVAENPDKFRIVGLAAGSNVTLLAHQVKTFKPQLVAVRNESLVNELKDALADME------QKPEIIPGEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQG------------LPECALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMSLAYAAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCEKHQEEYVATPSLEEIIHYDLWAR 1549
            K IS++GSTGSIGTQTL IV + PD+FR+V L AG N+ LL  Q++  +P+LVA+ +E+L+ ELK  L  ++      Q PE++ G  G+   A    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+QG            +P   LRRI LTASGGAFRD     L+   VADA  HPNW+MG+KITVDSA+L NKGLEVIEAHYLFG +YD IEIVIHPQSIIHSMVE  DSSVLAQLGWPDM+LPILY +SWP R+   E  W RLDL ++G L+F+APD  KYP M LAYAAGRAGGTM  V++AANE+AV  F++E+I +LDI +V+E  CE+H+ + +A P L++++  D WAR
Sbjct:    2 KAISVLGSTGSIGTQTLQIVDDFPDQFRVVALTAGRNLALLVEQIQRHQPELVALADEALLPELKQRLEALDPSDRPAQCPEMVGGPDGLEVAASWGSAELVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWADTARLSTGVPTPGLRRIQLTASGGAFRDWNAADLEKATVADATSHPNWSMGRKITVDSASLMNKGLEVIEAHYLFGLDYDHIEIVIHPQSIIHSMVEMADSSVLAQLGWPDMKLPILYCLSWPSRL---ETPWRRLDLTEVGQLSFRAPDPNKYPCMELAYAAGRAGGTMPAVMNAANEEAVAQFLEERIHFLDIPEVIEAACERHKPDLMAHPQLDDVLEVDQWAR 396          
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy Swiss-Prot
Match: DXR_SYNPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain WH8102) GN=dxr PE=3 SV=1)

HSP 1 Score: 463.766 bits (1192), Expect = 3.138e-156
Identity = 232/391 (59.34%), Postives = 287/391 (73.40%), Query Frame = 2
Query:  422 IVGSTGSIGTQTLDIVAENPDKFRIVGLAAGSNVTLLAHQVKTFKPQLVAVRNESLVNELK---DALADMEQKPEIIPGEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQG------------LPECALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMSLAYAAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCEKHQEEYVATPSLEEIIHYDLWAR 1549
            ++GSTGSIGTQTL I  E P++FR+V L AG N+ LL  Q++  +P+LVA+ N  L+ EL+   DAL    ++P+++ G  G+   A    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+QG            +P   LRRI LTASGGAFRD   + L++  VADA  HPNW+MG+KITVDSA+L NKGLEVIEAHYLFG +YD IEIVIHPQSIIHSM+E  DSSVLAQLGWPDM+LPILY +SWP R+   E  W RLDL ++G L+F+APD  KYP M LAYAAGRAGGTM  V++AANE+AV  F++EKI +LDI  V+E  CE+H+ + +A P LE+++  D WAR
Sbjct:    1 MLGSTGSIGTQTLQIAEEFPEQFRVVALTAGQNLDLLVQQIQRHQPELVALANADLLPELQQRLDALGTDRKRPQLVGGPDGLNIAASWESADLVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQGTPWAENARLSTGVPTPGLRRIQLTASGGAFRDWKAEDLENATVADATSHPNWSMGRKITVDSASLMNKGLEVIEAHYLFGLDYDHIEIVIHPQSIIHSMIELADSSVLAQLGWPDMKLPILYCLSWPSRL---ETPWRRLDLTEVGQLSFRAPDPAKYPCMQLAYAAGRAGGTMPAVMNAANEEAVAQFLEEKIHFLDIPVVIEAACERHKADLIAHPQLEDVLAVDQWAR 388          
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy Swiss-Prot
Match: DXR_PROMT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL2A) GN=dxr PE=3 SV=1)

HSP 1 Score: 460.685 bits (1184), Expect = 5.972e-155
Identity = 232/399 (58.15%), Postives = 288/399 (72.18%), Query Frame = 2
Query:  410 KPISIVGSTGSIGTQTLDIVAENPDKFRIVGLAAGSNVTLLAHQVKTFKPQLVAVRNESLVNELKDALADMEQ------KPEIIPGEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQG------------LPECALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMSLAYAAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCEKHQEEYVATPSLEEIIHYDLWARD 1552
            K IS++GSTGSIGTQTL I  E P++F+IV L AG N+ L+  Q++T +P++V++ +ESL++EL   +  + +      KP ++ G +G+   A    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P   K   ++LPADSEHSAIFQC+QG            +P    + I LTASGGAFRD   + L    V DA  HPNW+MGKKITVDSATL NKGLEVIEAHYLFG  YD IEI+IHPQSIIHSMVE  DSSVLAQLGWPDM+LPILY +SWP R+   +  WPRL L ++G+LTFK PD  KYP M LAY+AG++GGTM  VL+AANEKAVELF++E+  ++DI KV+E  CEKH+ +    PSL EI+  D WAR+
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFKIVALTAGKNLDLVIKQIETHQPEVVSLADESLLSELSSRINSLTENKKIVKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIPALKKSGSRLLPADSEHSAIFQCLQGTPWADNARLSTGMPTPGFKSIQLTASGGAFRDWKAEDLVKATVEDATSHPNWSMGKKITVDSATLMNKGLEVIEAHYLFGLSYDQIEIIIHPQSIIHSMVELDDSSVLAQLGWPDMKLPILYCLSWPSRL---KTPWPRLKLTQIGNLTFKEPDTKKYPCMELAYSAGKSGGTMPAVLNAANEKAVELFLEERFKFIDIPKVIEAICEKHKCDLNLNPSLSEILEIDNWARE 397          
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy Swiss-Prot
Match: DXR_PROM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL1A) GN=dxr PE=3 SV=1)

HSP 1 Score: 459.914 bits (1182), Expect = 1.246e-154
Identity = 233/399 (58.40%), Postives = 287/399 (71.93%), Query Frame = 2
Query:  410 KPISIVGSTGSIGTQTLDIVAENPDKFRIVGLAAGSNVTLLAHQVKTFKPQLVAVRNESLVNELKDALADMEQ------KPEIIPGEQGVIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQG------------LPECALRRIILTASGGAFRDLPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPERIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMSLAYAAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCEKHQEEYVATPSLEEIIHYDLWARD 1552
            K IS++GSTGSIGTQTL I  E PD+F+IV L AG N+ L+  Q++T +P++V++ +ESL+ EL   +  + +      KP ++ G +G+   A    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P   K   ++LPADSEHSAIFQC+QG            +P    + I LTASGGAFRD   + L    V DA  HPNW+MGKKITVDSATL NKGLEVIEAHYLFG  YD IEI+IHPQSIIHSMVE  DSSVLAQLGWPDM+LPILY +SWP R+   +  WPRL L ++G+LTFK PD  KYP M LAY+AG++GGTM  VL+AANEKAVELF++E+  ++DI KV+E  CEKH+ +    PSL EI+  D WAR+
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPDQFKIVALTAGKNLDLVTKQIETHQPEVVSLADESLLPELTRRINSLNEDSKILKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIPALKKSGSRLLPADSEHSAIFQCLQGTPWADNARLSTGVPTPGFKSIQLTASGGAFRDWKAEDLVKATVEDATSHPNWSMGKKITVDSATLMNKGLEVIEAHYLFGLSYDQIEIIIHPQSIIHSMVELDDSSVLAQLGWPDMKLPILYCLSWPSRL---KTPWPRLKLTQIGNLTFKEPDTNKYPCMELAYSAGKSGGTMPAVLNAANEKAVELFLEERFKFIDIPKVIEAICEKHKCDLNLNPSLSEILEIDNWARE 397          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A075BNV7_ROSRU0.000e+084.391-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
A0A059P9W8_ROSHC0.000e+084.391-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
V7CB56_PHAVU0.000e+084.81Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
W8NXM5_JATCU0.000e+086.051-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
Q947C3_SOLLC0.000e+084.841-deoxy-D-xylulose-5-phosphate reductoisomerase OS... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011879 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DXR_SYNS31.253e-15760.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS91.915e-15659.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNPX3.138e-15659.341-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMT5.972e-15558.151-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM11.246e-15458.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 130..150
NoneNo IPR availableGENE3D1.10.1740.10coord: 382..463
e-value: 7.3E-28
score: 96.2
NoneNo IPR availablePANTHERPTHR30525:SF21-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, CHLOROPLASTICcoord: 53..473
NoneNo IPR availableSUPERFAMILY55347Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domaincoord: 202..339
IPR016040NAD(P)-binding domainGENE3D3.40.50.720coord: 71..225
e-value: 1.5E-63
score: 213.0
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 76..225
IPR026877DXP reductoisomerase C-terminal domainPFAMPF13288DXPR_Ccoord: 336..457
e-value: 2.8E-37
score: 127.3
IPR026877DXP reductoisomerase C-terminal domainSUPERFAMILY690551-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domaincoord: 369..462
IPR0038211-deoxy-D-xylulose 5-phosphate reductoisomeraseTIGRFAMTIGR00243TIGR00243coord: 77..459
e-value: 6.9E-160
score: 530.1
IPR0038211-deoxy-D-xylulose 5-phosphate reductoisomerasePIRSFPIRSF006205Dxp_reductoisomrscoord: 76..469
e-value: 4.0E-169
score: 560.1
IPR0038211-deoxy-D-xylulose 5-phosphate reductoisomerasePANTHERPTHR305251-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASEcoord: 53..473
IPR0038211-deoxy-D-xylulose 5-phosphate reductoisomeraseHAMAPMF_00183DXP_reductoisomcoord: 79..462
score: 45.336
IPR0136441-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminalPFAMPF08436DXP_redisom_Ccoord: 221..304
e-value: 2.4E-39
score: 133.3
IPR0135121-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminalPFAMPF02670DXP_reductoisomcoord: 79..207
e-value: 3.6E-47
score: 160.2

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011879 ID=g.arboreum_cottongen_reftransV1_0011879; Name=g.arboreum_cottongen_reftransV1_0011879; organism=Gossypium arboreum; type=contig; length=1970bp
CACCACCATCCTTTGCCACTTCCCAAACTCCCCCACCTCCACACATTAAT
ACCAATTCCTTATTCAAAGAGTTCTCAAAGTTTTTTCTTTTGGCACCCCC
ACTTTTCATTTCTCCAAAGCCTAGCCTGGTGTGATTTCCTTTTTGTTTTG
AGTTAAAAGGGAGTTCCTTTTCACAGTTATCATGGCTTTGAATTTGGTTT
CTCCTCCTGAAATCCATTCTATCTCCTTCTTGGGTTCTACTAAGTCCAGC
TCCTTCTCCAAGCTATTTCCAGGGGGTTTTGTTTTGAAGAAGGACTGTGG
CACCACGTTTGGGAGGAAAGTTCAATGTTCAGCTCAGGCTCCTCAACCAC
CACCTGCATGGCCTGGACGAGCTTTTCCAGATCCCGGACGCAAAACTTGG
GATGGCCCCAAGCCTATCTCCATTGTCGGTTCAACTGGTTCCATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGAATCCAGATAAATTCAGAATCGTGG
GGCTTGCTGCTGGTTCAAATGTCACCCTTCTTGCTCATCAGGTGAAGACA
TTCAAACCTCAACTGGTTGCTGTTAGGAATGAGTCTTTGGTAAATGAACT
CAAAGATGCTTTGGCTGACATGGAGCAAAAGCCTGAAATTATTCCTGGGG
AACAAGGAGTTATTGAGGTTGCTCGCCATCCTGATGCTGTCAGTGTGGTT
ACAGGGATAGTAGGATGTGCAGGATTGAAGCCTACAGTTGCTGCAATAGA
AGCTGGGAAAGATATTGCTTTAGCCAATAAAGAGACCTTGATCGCTGGTG
GTCCCTTTGTCCTTCCTCTTGCTCACAAGCATAAAGTAAAAATCCTTCCA
GCAGATTCTGAACATTCTGCCATTTTTCAGTGTATTCAGGGATTGCCAGA
GTGTGCGCTTCGGCGTATTATTTTGACTGCATCTGGTGGGGCTTTCAGGG
ATTTGCCTGTTGATAAGTTGAAAGACGTTAAAGTAGCTGATGCTTTGAAA
CATCCGAACTGGAATATGGGGAAAAAGATCACGGTGGACTCTGCTACCCT
TTTCAACAAGGGTCTAGAAGTTATTGAAGCCCATTACCTCTTTGGGGCTG
AGTATGATGACATTGAGATAGTAATTCACCCACAATCTATTATTCACTCA
ATGGTTGAAACACAGGATTCATCAGTGCTGGCTCAGTTGGGATGGCCAGA
TATGCGCTTGCCAATCCTATACACTATGTCATGGCCAGAAAGAATTTATT
GCTCTGAAATAACTTGGCCTCGCCTTGATCTTTGCAAACTTGGTTCACTA
ACTTTTAAGGCTCCTGACAACGTGAAATACCCCTCCATGAGTCTTGCCTA
TGCTGCTGGAAGGGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCTA
ATGAGAAAGCTGTGGAATTGTTCATAGATGAAAAGATCAGCTATTTGGAT
ATTTTTAAGGTGGTGGAATTAACATGTGAGAAGCACCAGGAAGAATATGT
GGCCACTCCTTCCCTAGAGGAGATTATACATTATGACCTGTGGGCTCGAG
ACTATGCTGCTAGCATACAACAATCATCTGGTCTGAGTCCCGTTCTTGCA
TAACTGATGGCTTGCACATGTTACAAGACCAAACCAGGCTCTATCTTGAA
GACTCGAAAGTTCTCAGTTTATGCAGAAGGCTAGCATTCTTTCAAAGATG
CCTAGTATCATGTGTCTCGATCTGAAGATATTGATATCATTCCCCCGTTT
AGTTGTATAATGTCCAATTTAGAAGTGGCAAATTAAAGAATATAGAGCAT
GACATGTTGCGGTTGGGTGTAAACATAGGACAAATGCGAGCAATCAGTAG
CAGCCTCCGCTAAGCAGGGTTGTTTTTATTACATCTAATTGATGTCATGT
TTATGTTTTTTTTTTTTAATGATATCATTGTACTGAAAGTGTTAAAATAT
TTATATAAAACTTTGACAGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR026877DXPR_C
IPR003821DXP_reductoisomerase
IPR013644DXP_reductoisomerase_C
IPR013512DXP_reductoisomerase_N
Vocabulary: Molecular Function
TermDefinition
GO:00306041-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GO:0046872metal ion binding
GO:0005515protein binding
GO:0070402NADPH binding
Vocabulary: Biological Process
TermDefinition
GO:0055114obsolete oxidation-reduction process
GO:0008299isoprenoid biosynthetic process