g.arboreum_cottongen_reftransV1_0019940, g.arboreum_cottongen_reftransV1_0019940 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019940
Unique Nameg.arboreum_cottongen_reftransV1_0019940
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0019940:13..412 .
Chr4:110398513..110398912 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: D7KP11_ARALL (Rubredoxin family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474725 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.113e-50
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE+ GDPSYPIPPGFQFDKLP+DWRCPTCGAA+SFFESK VEIAGFAQNQQ+GLGGNALTSGQK  LI
Sbjct:   92 FAVLNTGIYECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNALTSGQKTGLI 177
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: U5GAX7_POPTR (Rubredoxin family protein OS=Populus trichocarpa GN=POPTR_0005s05080g PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 8.277e-50
Identity = 78/86 (90.70%), Postives = 84/86 (97.67%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE+VGDPSYPIPPGFQFDKLP +WRCPTCGAA+SFF SKSVEIAGFAQNQQ+GLGGNALTSGQKA+LI
Sbjct:   98 FAVLNTGIYECRSCGYKYDESVGDPSYPIPPGFQFDKLPGEWRCPTCGAAQSFFVSKSVEIAGFAQNQQYGLGGNALTSGQKAVLI 183
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: Q9SLI4_ARATH (At1g54500/F20D21_31 OS=Arabidopsis thaliana GN=F20D21.31 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 8.454e-50
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE+ GDPSYPIPPGFQFDKLP+DWRCPTCGAA+SFFESK VEIAGFAQNQQ+GLGGNALTSGQK  LI
Sbjct:   92 FAVLNTGIYECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNALTSGQKTGLI 177
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A068UK30_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_34 OS=Coffea canephora GN=GSCOC_T00027567001 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.372e-50
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGI+ECRSCG++YDE VGDPSYPIPPG  FDKLPDDWRCPTCGAAK FFESKSVE+AGFAQNQQFG GGN+LTSGQKALLI
Sbjct:  108 FAVLNTGIHECRSCGYRYDETVGDPSYPIPPGLPFDKLPDDWRCPTCGAAKGFFESKSVEVAGFAQNQQFGFGGNSLTSGQKALLI 193
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A078GEW5_BRANA (BnaA04g05960D protein OS=Brassica napus GN=BnaA04g05960D PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 9.780e-50
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE+ GDPSYPIPPGFQFDKLP+DWRCPTCGAA+SFFESK VEIAGFAQNQQ+GLGGN LTSGQK  LI
Sbjct:   84 FAVLNTGIYECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNQLTSGQKTALI 169
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_SYNY3 (Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.295e-15
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIA--GFAQNQQFGLGGNALTSGQKALLI 411
             A L +  +ECR+CG+ Y  + GD    + PG  F+ LP +W+CP CGA +++F S     A  GFA+N  +G G N ++ G+K LLI
Sbjct:   10 LAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNYFISTGETDAPSGFAENLNYGFGFNRMSGGKKNLLI 97
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_ANAVT (Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rub PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.525e-15
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = -2 
Query:  154 AVLNTGI--YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES--KSVEIAGFAQNQQFGLGGNALTSGQKALLI 408
            AV NT +  +ECRSCG+ Y+   GD  + I P   F +LP +WRCP C A K+ F +   +   +GF +N  +GLG N LT  QK +LI
Sbjct:    5 AVENTVLDRFECRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGPAGTASGFRENLGYGLGVNKLTPAQKNILI 93
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_NOSS1 (Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rub PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.260e-15
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = -2 
Query:  154 AVLNTGI--YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES--KSVEIAGFAQNQQFGLGGNALTSGQKALLI 408
            AV NT +  +ECRSCG+ Y+   GD  + I P   F +LP +WRCP C A K+ F +   +   +GF +N  +GLG N LT  QK +LI
Sbjct:    5 AVENTVLDRFECRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGPAGTASGFRENLGYGLGVNKLTPAQKNILI 93
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR4_RHOSQ (Rubredoxin 4 OS=Rhodococcus sp. (strain Q15) GN=rubA4 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.539e-13
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = -2 
Query:  232 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVE 390
            +Y+C  CGF+YDEAVG P   I PG ++D +P+DW CP CGAAKS F    VE
Sbjct:    6 LYQCAQCGFEYDEAVGWPEDGIEPGTRWDDIPEDWSCPDCGAAKSDFFMVEVE 58
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR4_RHOER (Rubredoxin 4 OS=Rhodococcus erythropolis GN=rubA4 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.539e-13
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = -2 
Query:  232 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVE 390
            +Y+C  CGF+YDEAVG P   I PG ++D +P+DW CP CGAAKS F    VE
Sbjct:    6 LYQCAQCGFEYDEAVGWPEDGIEPGTRWDDIPEDWSCPDCGAAKSDFFMVEVE 58
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_DESGI (Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.076e-12
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = -2 
Query:  241 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESK 390
            IY C  CG++YD A GDP   I PG +F+ LPDDW CP CGA+K  FE +
Sbjct:    3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ 52
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR2_RHOER (Rubredoxin-2 OS=Rhodococcus erythropolis GN=rubA2 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.480e-12
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = -2 
Query:  232 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVE 390
            ++ C  CGF+YDEA+G P   I PG ++D++P+DW CP CGAAK  FE   V+
Sbjct:   10 LFRCLQCGFEYDEAIGWPDDGIEPGTRWDEIPEDWSCPDCGAAKVDFEMVEVD 62
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_THETC (Rubredoxin OS=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) GN=Tthe_0549 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.373e-12
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = -2 
Query:  244 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES 387
            ++C  CG+ YD  VGDP+  IPPG +F+ LPDDW CP CG  K  FE 
Sbjct:    4 WQCTVCGYIYDPEVGDPTQNIPPGTKFEDLPDDWVCPDCGVGKDQFEK 51
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_PYRFU (Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rub PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 6.633e-12
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = -2 
Query:  244 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES 387
            + C+ CG+ YDE  GDP   I PG +F++LPDDW CP CGA KS FE 
Sbjct:    4 WVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEK 51
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_PYRAB (Rubredoxin OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rub PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.655e-11
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = -2 
Query:  247 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFE 387
            + C+ CG+ YDE  GDP   I PG +F+ LPDDW CP CGA KS FE
Sbjct:    4 WRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7KP11_ARALL6.113e-5089.53Rubredoxin family protein OS=Arabidopsis lyrata su... [more]
U5GAX7_POPTR8.277e-5090.70Rubredoxin family protein OS=Populus trichocarpa G... [more]
Q9SLI4_ARATH8.454e-5089.53At1g54500/F20D21_31 OS=Arabidopsis thaliana GN=F20... [more]
A0A068UK30_COFCA9.372e-5088.37Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A078GEW5_BRANA9.780e-5088.37BnaA04g05960D protein OS=Brassica napus GN=BnaA04g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RUBR_SYNY31.295e-1540.91Rubredoxin OS=Synechocystis sp. (strain PCC 6803 /... [more]
RUBR_ANAVT3.525e-1543.82Rubredoxin OS=Anabaena variabilis (strain ATCC 294... [more]
RUBR_NOSS15.260e-1543.82Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2... [more]
RUBR4_RHOSQ4.539e-1356.60Rubredoxin 4 OS=Rhodococcus sp. (strain Q15) GN=ru... [more]
RUBR4_RHOER4.539e-1356.60Rubredoxin 4 OS=Rhodococcus erythropolis GN=rubA4 ... [more]
RUBR_DESGI1.076e-1256.00Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1[more]
RUBR2_RHOER1.480e-1250.94Rubredoxin-2 OS=Rhodococcus erythropolis GN=rubA2 ... [more]
RUBR_THETC3.373e-1254.17Rubredoxin OS=Thermoanaerobacterium thermosaccharo... [more]
RUBR_PYRFU6.633e-1256.25Rubredoxin OS=Pyrococcus furiosus (strain ATCC 435... [more]
RUBR_PYRAB1.655e-1157.45Rubredoxin OS=Pyrococcus abyssi (strain GE5 / Orsa... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024935Rubredoxin domainPRINTSPR00163RUBREDOXINcoord: 5..21
score: 49.69
coord: 35..51
score: 58.82
IPR024935Rubredoxin domainPFAMPF00301Rubredoxincoord: 6..51
e-value: 1.1E-18
score: 66.8
IPR004039Rubredoxin-type foldGENE3D2.20.28.10coord: 2..55
e-value: 1.6E-23
score: 81.6
IPR018527Rubredoxin, iron-binding sitePROSITEPS00202RUBREDOXINcoord: 35..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 101..101
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..100
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..80
NoneNo IPR availableSUPERFAMILY57802Rubredoxin-likecoord: 3..68
NoneNo IPR availableTMHMMTMhelixcoord: 81..100
IPR024934Rubredoxin-like domainPROSITEPS50903RUBREDOXIN_LIKEcoord: 3..54
score: 13.599

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019940 ID=g.arboreum_cottongen_reftransV1_0019940; Name=g.arboreum_cottongen_reftransV1_0019940; organism=Gossypium arboreum; type=contig; length=412bp
GGCGGGGGGGCGTTTGATGGATTTTCCTATTTGCAGAAAAATATACCTTT
AAGGCAAAGAAAAATTACAGAAATTTATATTATGCACCCTACCTACCTAT
TGCAAAAAGTAGCCACTCAAGAAGAGCACAAAGAAGAAGAACAAACTGCC
ATAAATTAAGAGGGCTTTTTGACCAGAAGTAAGAGCATTGCCCCCTAAAC
CAAATTGCTGATTCTGAGCAAACCCAGCAATCTCAACACTCTTACTCTCA
AAGAAAGACTTTGCAGCCCCACAGGTAGGGCATCTCCAATCATCAGGCAG
CTTATCAAACTGAAACCCTGGTGGAATTGGATAGGAAGGATCACCCACTG
CTTCATCATACTTGAACCCACATGACCTGCACTCATATATCCCTGTGTTC
AACACTGCAAAC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR024935Rubredoxin_dom
IPR004039Rubredoxin-type_fold
IPR018527Rubredoxin_Fe_BS
IPR024934Rubredoxin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0046872metal ion binding