g.arboreum_cottongen_reftransV1_0019940, g.arboreum_cottongen_reftransV1_0019940 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0019940
Unique Name	g.arboreum_cottongen_reftransV1_0019940
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	412

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0019940:13..412 . Chr4:110398513..110398912 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: G7L0U0_MEDTR (Rubredoxin-like protein OS=Medicago truncatula GN=MTR_7g114590 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.575e-50
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE VGDPSYPIPPG+QF+KLPDDWRCPTCGAA+SFFESKSVEIAGFAQNQQ+GLGGN+LT GQK +LI
Sbjct:   80 FAVLNTGIYECRSCGYKYDEGVGDPSYPIPPGYQFEKLPDDWRCPTCGAAQSFFESKSVEIAGFAQNQQYGLGGNSLTGGQKTVLI 165

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: V4KIT9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10023702mg PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.882e-50
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE+ GDPSYPIPPGFQFDKLP+DWRCPTCGAAK+FFESK VEIAGFAQNQQ+GLGGNALTSGQK  LI
Sbjct:   92 FAVLNTGIYECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAKTFFESKMVEIAGFAQNQQYGLGGNALTSGQKTALI 177

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: W9R6S1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006182 PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.622e-50
Identity = 78/86 (90.70%), Postives = 84/86 (97.67%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEAVGDPSYPIPPG  F+KLP+DWRCPTCGA++SFFESKSVEIAGFAQNQQFGLGGNALTSGQKA+LI
Sbjct:  108 FAVLNTGIYECRSCGYKYDEAVGDPSYPIPPGLPFEKLPEDWRCPTCGASQSFFESKSVEIAGFAQNQQFGLGGNALTSGQKAILI 193

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: V7BRF7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G099300g PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.623e-50
Identity = 76/86 (88.37%), Postives = 85/86 (98.84%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGI+ECRSCG+KYDEAVGDPSYP+PPGFQF+KLPDDWRCPTCGAA+SFFESKSV+IAGFAQNQQ+GLGGN+LTSGQK +LI
Sbjct:   96 FAVLNTGIFECRSCGYKYDEAVGDPSYPLPPGFQFEKLPDDWRCPTCGAAQSFFESKSVQIAGFAQNQQYGLGGNSLTSGQKTILI 181

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: C6T047_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.204e-50
Identity = 75/86 (87.21%), Postives = 85/86 (98.84%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEAVGDPSYP+PPG+QF+KLPDDWRCPTCGAA+SFF+SKSV+IAGFAQNQQ+GLGGN+LTSGQK +LI
Sbjct:   94 FAVLNTGIYECRSCGYKYDEAVGDPSYPLPPGYQFEKLPDDWRCPTCGAAQSFFQSKSVQIAGFAQNQQYGLGGNSLTSGQKTILI 179

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: I3SKV2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.407e-50
Identity = 77/86 (89.53%), Postives = 83/86 (96.51%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE+VGDPSYPIPPGF F+KLPDDWRCPTCGAA SFFESKSVEIAGFA+NQQ+GLGGN+LTSGQK LLI
Sbjct:   83 FAVLNTGIYECRSCGYKYDESVGDPSYPIPPGFPFEKLPDDWRCPTCGAALSFFESKSVEIAGFAENQQYGLGGNSLTSGQKTLLI 168

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: B7FGT1_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 5.831e-50
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            F VLNTGIYECRSCG+KYDE VGDPSYPIPPG+QF+KLPDDWRCPTCGAA+SFFESKSVEIAGFAQNQQ+GLGGN+LT GQK +LI
Sbjct:   80 FVVLNTGIYECRSCGYKYDEGVGDPSYPIPPGYQFEKLPDDWRCPTCGAAQSFFESKSVEIAGFAQNQQYGLGGNSLTGGQKTVLI 165

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A078E0W8_BRANA (BnaC04g28580D protein OS=Brassica napus GN=BnaC04g28580D PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 5.839e-50
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE+ GDPSYPIPPGFQFDKLP+DWRCPTCGAA+SFFESK VEIAGFAQNQQ+GLGGN LTSGQK  LI
Sbjct:   83 FAVLNTGIYECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNQLTSGQKTALI 168

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A0D3BYN4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 5.839e-50
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE+ GDPSYPIPPGFQFDKLP+DWRCPTCGAA+SFFESK VEIAGFAQNQQ+GLGGN LTSGQK  LI
Sbjct:   83 FAVLNTGIYECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNQLTSGQKTALI 168

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: M4EXE1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra033478 PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.031e-50
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE+ GDPSYPIPPGFQFDKLP+DWRCPTCGAA+SFFESK VEIAGFAQNQQ+GLGGN LTSGQK  LI
Sbjct:   83 FAVLNTGIYECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNQLTSGQKTALI 168

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_SYNY3 (Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.295e-15
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIA--GFAQNQQFGLGGNALTSGQKALLI 411
             A L +  +ECR+CG+ Y  + GD    + PG  F+ LP +W+CP CGA +++F S     A  GFA+N  +G G N ++ G+K LLI
Sbjct:   10 LAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNYFISTGETDAPSGFAENLNYGFGFNRMSGGKKNLLI 97

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_ANAVT (Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rub PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.525e-15
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = -2

Query:  154 AVLNTGI--YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES--KSVEIAGFAQNQQFGLGGNALTSGQKALLI 408
            AV NT +  +ECRSCG+ Y+   GD  + I P   F +LP +WRCP C A K+ F +   +   +GF +N  +GLG N LT  QK +LI
Sbjct:    5 AVENTVLDRFECRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGPAGTASGFRENLGYGLGVNKLTPAQKNILI 93

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_NOSS1 (Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rub PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.260e-15
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = -2

Query:  154 AVLNTGI--YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES--KSVEIAGFAQNQQFGLGGNALTSGQKALLI 408
            AV NT +  +ECRSCG+ Y+   GD  + I P   F +LP +WRCP C A K+ F +   +   +GF +N  +GLG N LT  QK +LI
Sbjct:    5 AVENTVLDRFECRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGPAGTASGFRENLGYGLGVNKLTPAQKNILI 93

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR4_RHOSQ (Rubredoxin 4 OS=Rhodococcus sp. (strain Q15) GN=rubA4 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.539e-13
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = -2

Query:  232 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVE 390
            +Y+C  CGF+YDEAVG P   I PG ++D +P+DW CP CGAAKS F    VE
Sbjct:    6 LYQCAQCGFEYDEAVGWPEDGIEPGTRWDDIPEDWSCPDCGAAKSDFFMVEVE 58

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR4_RHOER (Rubredoxin 4 OS=Rhodococcus erythropolis GN=rubA4 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.539e-13
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = -2

Query:  232 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVE 390
            +Y+C  CGF+YDEAVG P   I PG ++D +P+DW CP CGAAKS F    VE
Sbjct:    6 LYQCAQCGFEYDEAVGWPEDGIEPGTRWDDIPEDWSCPDCGAAKSDFFMVEVE 58

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_DESGI (Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.076e-12
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = -2

Query:  241 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESK 390
            IY C  CG++YD A GDP   I PG +F+ LPDDW CP CGA+K  FE +
Sbjct:    3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ 52

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR2_RHOER (Rubredoxin-2 OS=Rhodococcus erythropolis GN=rubA2 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.480e-12
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = -2

Query:  232 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVE 390
            ++ C  CGF+YDEA+G P   I PG ++D++P+DW CP CGAAK  FE   V+
Sbjct:   10 LFRCLQCGFEYDEAIGWPDDGIEPGTRWDEIPEDWSCPDCGAAKVDFEMVEVD 62

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_THETC (Rubredoxin OS=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) GN=Tthe_0549 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.373e-12
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = -2

Query:  244 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES 387
            ++C  CG+ YD  VGDP+  IPPG +F+ LPDDW CP CG  K  FE 
Sbjct:    4 WQCTVCGYIYDPEVGDPTQNIPPGTKFEDLPDDWVCPDCGVGKDQFEK 51

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_PYRFU (Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rub PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 6.633e-12
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = -2

Query:  244 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES 387
            + C+ CG+ YDE  GDP   I PG +F++LPDDW CP CGA KS FE 
Sbjct:    4 WVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEK 51

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_PYRAB (Rubredoxin OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rub PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.655e-11
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = -2

Query:  247 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFE 387
            + C+ CG+ YDE  GDP   I PG +F+ LPDDW CP CGA KS FE
Sbjct:    4 WRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
G7L0U0_MEDTR	1.575e-50	88.37	Rubredoxin-like protein OS=Medicago truncatula GN=...	[more]
V4KIT9_EUTSA	1.882e-50	89.53	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
W9R6S1_9ROSA	2.622e-50	90.70	Uncharacterized protein OS=Morus notabilis GN=L484...	[more]
V7BRF7_PHAVU	2.623e-50	88.37	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
C6T047_SOYBN	4.204e-50	87.21	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
I3SKV2_LOTJA	4.407e-50	89.53	Uncharacterized protein OS=Lotus japonicus PE=2 SV...	[more]
B7FGT1_MEDTR	5.831e-50	87.21	Putative uncharacterized protein OS=Medicago trunc...	[more]
A0A078E0W8_BRANA	5.839e-50	88.37	BnaC04g28580D protein OS=Brassica napus GN=BnaC04g...	[more]
A0A0D3BYN4_BRAOL	5.839e-50	88.37	Uncharacterized protein OS=Brassica oleracea var. ...	[more]
M4EXE1_BRARP	6.031e-50	88.37	Uncharacterized protein OS=Brassica rapa subsp. pe...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
RUBR_SYNY3	1.295e-15	40.91	Rubredoxin OS=Synechocystis sp. (strain PCC 6803 /...	[more]
RUBR_ANAVT	3.525e-15	43.82	Rubredoxin OS=Anabaena variabilis (strain ATCC 294...	[more]
RUBR_NOSS1	5.260e-15	43.82	Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2...	[more]
RUBR4_RHOSQ	4.539e-13	56.60	Rubredoxin 4 OS=Rhodococcus sp. (strain Q15) GN=ru...	[more]
RUBR4_RHOER	4.539e-13	56.60	Rubredoxin 4 OS=Rhodococcus erythropolis GN=rubA4 ...	[more]
RUBR_DESGI	1.076e-12	56.00	Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1	[more]
RUBR2_RHOER	1.480e-12	50.94	Rubredoxin-2 OS=Rhodococcus erythropolis GN=rubA2 ...	[more]
RUBR_THETC	3.373e-12	54.17	Rubredoxin OS=Thermoanaerobacterium thermosaccharo...	[more]
RUBR_PYRFU	6.633e-12	56.25	Rubredoxin OS=Pyrococcus furiosus (strain ATCC 435...	[more]
RUBR_PYRAB	1.655e-11	57.45	Rubredoxin OS=Pyrococcus abyssi (strain GE5 / Orsa...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024935	Rubredoxin domain	PRINTS	PR00163	RUBREDOXIN	coord: 5..21 score: 49.69 coord: 35..51 score: 58.82
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 6..51 e-value: 1.1E-18 score: 66.8
IPR004039	Rubredoxin-type fold	GENE3D	2.20.28.10		coord: 2..55 e-value: 1.6E-23 score: 81.6
IPR018527	Rubredoxin, iron-binding site	PROSITE	PS00202	RUBREDOXIN	coord: 35..45
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 101..101
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 81..100
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..80
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 3..68
None	No IPR available	TMHMM	TMhelix		coord: 81..100
IPR024934	Rubredoxin-like domain	PROSITE	PS50903	RUBREDOXIN_LIKE	coord: 3..54 score: 13.599

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0019940 ID=g.arboreum_cottongen_reftransV1_0019940; Name=g.arboreum_cottongen_reftransV1_0019940; organism=Gossypium arboreum; type=contig; length=412bp
GGCGGGGGGGCGTTTGATGGATTTTCCTATTTGCAGAAAAATATACCTTT
AAGGCAAAGAAAAATTACAGAAATTTATATTATGCACCCTACCTACCTAT
TGCAAAAAGTAGCCACTCAAGAAGAGCACAAAGAAGAAGAACAAACTGCC
ATAAATTAAGAGGGCTTTTTGACCAGAAGTAAGAGCATTGCCCCCTAAAC
CAAATTGCTGATTCTGAGCAAACCCAGCAATCTCAACACTCTTACTCTCA
AAGAAAGACTTTGCAGCCCCACAGGTAGGGCATCTCCAATCATCAGGCAG
CTTATCAAACTGAAACCCTGGTGGAATTGGATAGGAAGGATCACCCACTG
CTTCATCATACTTGAACCCACATGACCTGCACTCATATATCCCTGTGTTC
AACACTGCAAAC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR024935	Rubredoxin_dom
IPR004039	Rubredoxin-type_fold
IPR018527	Rubredoxin_Fe_BS
IPR024934	Rubredoxin-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0046872	metal ion binding

Search form

g.arboreum_cottongen_reftransV1_0019940, g.arboreum_cottongen_reftransV1_0019940 (contig) Gossypium arboreum

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