g.arboreum_cottongen_reftransV1_0019940, g.arboreum_cottongen_reftransV1_0019940 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019940
Unique Nameg.arboreum_cottongen_reftransV1_0019940
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length412
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0019940:13..412 .
Chr4:110398513..110398912 -		n/a
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A0D2TN91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G285800 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 6.355e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI
Sbjct:   98 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 183
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: V4SF71_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002532mg PE=4 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.899e-53
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAA+SFFESKSVEIAGFA+NQQFGLGGNALTSGQKA+LI
Sbjct:   98 FAVLNTGIYECRSCGYKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAQSFFESKSVEIAGFAENQQFGLGGNALTSGQKAVLI 183
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: U7E0Z1_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0030s00410g PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.348e-53
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEAVGDPSYP+PPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQ+GLGGNALTSGQK +LI
Sbjct:   23 FAVLNTGIYECRSCGYKYDEAVGDPSYPLPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKTILI 108
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A067JUG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23458 PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.227e-52
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEAVGDPSYPIPPG QFDKLP+DWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGN+LTSGQKA LI
Sbjct:   86 FAVLNTGIYECRSCGYKYDEAVGDPSYPIPPGLQFDKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLTSGQKAALI 171
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A061F296_THECC (Rubredoxin-like superfamily protein OS=Theobroma cacao GN=TCM_026409 PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.246e-52
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCGFKYDEAVGDPSYPI PG QFDKLP+DWRCPTCGAA+SFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI
Sbjct:  102 FAVLNTGIYECRSCGFKYDEAVGDPSYPIAPGLQFDKLPEDWRCPTCGAAQSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 187
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: B9RET2_RICCO (Rubredoxin, putative OS=Ricinus communis GN=RCOM_1428560 PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.257e-52
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE VGDP+YPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGN+LTSGQK +LI
Sbjct:   92 FAVLNTGIYECRSCGYKYDEGVGDPTYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLTSGQKTILI 177
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A5B456_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016717 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.573e-52
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEA GDPSYPIPPG QFDKLPDDWRCPTCGAA+SFFESKSVEIAGFAQNQQFGLGGN LTSGQKA+LI
Sbjct:   64 FAVLNTGIYECRSCGYKYDEAAGDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGNTLTSGQKAVLI 149
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: F6HTU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01590 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.161e-52
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEA GDPSYPIPPG QFDKLPDDWRCPTCGAA+SFFESKSVEIAGFAQNQQFGLGGN LTSGQKA+LI
Sbjct:   97 FAVLNTGIYECRSCGYKYDEAAGDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGNTLTSGQKAVLI 182
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: M5W043_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011413mg PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.316e-51
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = -2 
Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEAVGDPSYPIPPG QFDKLP+DWRCPTCGAA+SFF SKSVEIAGFAQNQQFGLGGNALTSGQKA+LI
Sbjct:  108 FAVLNTGIYECRSCGYKYDEAVGDPSYPIPPGLQFDKLPEDWRCPTCGAAQSFFVSKSVEIAGFAQNQQFGLGGNALTSGQKAVLI 193
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: Q0GBX1_MUSAC (Putative rubredoxin OS=Musa acuminata PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.183e-50
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = -2 
Query:  163 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKA 411
            FAVLNTGIYECRSCG++YDEA GDPSYPIPPGFQF+KLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGN+LTSGQKA
Sbjct:   95 FAVLNTGIYECRSCGYRYDEAAGDPSYPIPPGFQFEKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLTSGQKA 177
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR2_PSEAE (Rubredoxin-2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rubA2 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.532e-9
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = -2 
Query:  226 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIA 387
            ++C  CGF YDEA+G P   IP G +++ +P DW CP CG  K  FE   +EIA
Sbjct:    4 WQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVGKIDFE--MIEIA 55
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR1_ALCBS (Rubredoxin-1 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) GN=rubA PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.568e-9
Identity = 24/51 (47.06%), Postives = 30/51 (58.82%), Query Frame = -2 
Query:  235 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSV 387
            +EC  CGF YDEA G P   I PG  ++ +P+DW CP CG  K  FE   +
Sbjct:    4 WECVVCGFIYDEAEGLPDEGIEPGTAWNNVPEDWVCPDCGVGKDDFEMVEI 54
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_CLOAB (Rubredoxin OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=rd PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.009e-9
Identity = 24/47 (51.06%), Postives = 28/47 (59.57%), Query Frame = -2 
Query:  247 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFE 387
            Y C  CG+ YD A GDP   + PG  F+ +PDDW CP CG  K  FE
Sbjct:    4 YVCVVCGYIYDPAEGDPDNGVNPGTSFEDIPDDWVCPLCGVGKDQFE 50
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_BUTME (Rubredoxin OS=Butyribacterium methylotrophicum PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.457e-9
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = -2 
Query:  238 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKS 387
            Y C  CG+ YD AVGDP   + PG  F  LP+DW CP CG +K  F  ++
Sbjct:    4 YVCDICGYVYDPAVGDPDNGVAPGTAFADLPEDWVCPECGVSKDEFSPEA 53
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR2_METJA (Probable Rubredoxin-2 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0740 PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.640e-9
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = -2 
Query:  244 VLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES 405
            ++    Y+C  CG+ YDE  G+PS  IPPG +F+ LPD +RCP CG  K+ F  
Sbjct:    1 MIEMARYQC-MCGWVYDEDKGEPSQNIPPGTKFEDLPDTFRCPQCGLGKNAFRK 53
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TN91_GOSRA6.355e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
V4SF71_9ROSI2.899e-5395.35Uncharacterized protein OS=Citrus clementina GN=CI... [more]
U7E0Z1_POPTR7.348e-5394.19Uncharacterized protein (Fragment) OS=Populus tric... [more]
A0A067JUG3_JATCU1.227e-5294.19Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A061F296_THECC1.246e-5295.35Rubredoxin-like superfamily protein OS=Theobroma c... [more]
B9RET2_RICCO2.257e-5293.02Rubredoxin, putative OS=Ricinus communis GN=RCOM_1... [more]
A5B456_VITVI2.573e-5293.02Putative uncharacterized protein OS=Vitis vinifera... [more]
F6HTU5_VITVI4.161e-5293.02Putative uncharacterized protein OS=Vitis vinifera... [more]
M5W043_PRUPE1.316e-5193.02Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
Q0GBX1_MUSAC1.183e-5093.98Putative rubredoxin OS=Musa acuminata PE=2 SV=2[more]

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BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RUBR2_PSEAE1.532e-948.15Rubredoxin-2 OS=Pseudomonas aeruginosa (strain ATC... [more]
RUBR1_ALCBS1.568e-947.06Rubredoxin-1 OS=Alcanivorax borkumensis (strain AT... [more]
RUBR_CLOAB2.009e-951.06Rubredoxin OS=Clostridium acetobutylicum (strain A... [more]
RUBR_BUTME2.457e-948.00Rubredoxin OS=Butyribacterium methylotrophicum PE=... [more]
RUBR2_METJA2.640e-946.30Probable Rubredoxin-2 OS=Methanocaldococcus jannas... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024935Rubredoxin domainPRINTSPR00163RUBREDOXINcoord: 5..21
score: 49.69
coord: 35..51
score: 58.82
IPR024935Rubredoxin domainPFAMPF00301Rubredoxincoord: 6..51
e-value: 1.1E-18
score: 66.8
IPR004039Rubredoxin-type foldGENE3D2.20.28.10coord: 2..55
e-value: 1.6E-23
score: 81.6
IPR018527Rubredoxin, iron-binding sitePROSITEPS00202RUBREDOXINcoord: 35..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 101..101
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..100
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..80
NoneNo IPR availableSUPERFAMILY57802Rubredoxin-likecoord: 3..68
NoneNo IPR availableTMHMMTMhelixcoord: 81..100
IPR024934Rubredoxin-like domainPROSITEPS50903RUBREDOXIN_LIKEcoord: 3..54
score: 13.599

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019940 ID=g.arboreum_cottongen_reftransV1_0019940; Name=g.arboreum_cottongen_reftransV1_0019940; organism=Gossypium arboreum; type=contig; length=412bp
GGCGGGGGGGCGTTTGATGGATTTTCCTATTTGCAGAAAAATATACCTTT
AAGGCAAAGAAAAATTACAGAAATTTATATTATGCACCCTACCTACCTAT
TGCAAAAAGTAGCCACTCAAGAAGAGCACAAAGAAGAAGAACAAACTGCC
ATAAATTAAGAGGGCTTTTTGACCAGAAGTAAGAGCATTGCCCCCTAAAC
CAAATTGCTGATTCTGAGCAAACCCAGCAATCTCAACACTCTTACTCTCA
AAGAAAGACTTTGCAGCCCCACAGGTAGGGCATCTCCAATCATCAGGCAG
CTTATCAAACTGAAACCCTGGTGGAATTGGATAGGAAGGATCACCCACTG
CTTCATCATACTTGAACCCACATGACCTGCACTCATATATCCCTGTGTTC
AACACTGCAAAC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR024935Rubredoxin_dom
IPR004039Rubredoxin-type_fold
IPR018527Rubredoxin_Fe_BS
IPR024934Rubredoxin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0046872metal ion binding