g.arboreum_cottongen_reftransV1_0019940, g.arboreum_cottongen_reftransV1_0019940 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0019940
Unique Name	g.arboreum_cottongen_reftransV1_0019940
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	412

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0019940:13..412 . Chr4:110398513..110398912 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A0D2TN91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G285800 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 6.355e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI
Sbjct:   98 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 183

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: V4SF71_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002532mg PE=4 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.899e-53
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAA+SFFESKSVEIAGFA+NQQFGLGGNALTSGQKA+LI
Sbjct:   98 FAVLNTGIYECRSCGYKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAQSFFESKSVEIAGFAENQQFGLGGNALTSGQKAVLI 183

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: U7E0Z1_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0030s00410g PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.348e-53
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEAVGDPSYP+PPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQ+GLGGNALTSGQK +LI
Sbjct:   23 FAVLNTGIYECRSCGYKYDEAVGDPSYPLPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKTILI 108

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A067JUG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23458 PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.227e-52
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEAVGDPSYPIPPG QFDKLP+DWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGN+LTSGQKA LI
Sbjct:   86 FAVLNTGIYECRSCGYKYDEAVGDPSYPIPPGLQFDKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLTSGQKAALI 171

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A061F296_THECC (Rubredoxin-like superfamily protein OS=Theobroma cacao GN=TCM_026409 PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.246e-52
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCGFKYDEAVGDPSYPI PG QFDKLP+DWRCPTCGAA+SFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI
Sbjct:  102 FAVLNTGIYECRSCGFKYDEAVGDPSYPIAPGLQFDKLPEDWRCPTCGAAQSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 187

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: B9RET2_RICCO (Rubredoxin, putative OS=Ricinus communis GN=RCOM_1428560 PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.257e-52
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDE VGDP+YPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGN+LTSGQK +LI
Sbjct:   92 FAVLNTGIYECRSCGYKYDEGVGDPTYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLTSGQKTILI 177

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A5B456_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016717 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.573e-52
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEA GDPSYPIPPG QFDKLPDDWRCPTCGAA+SFFESKSVEIAGFAQNQQFGLGGN LTSGQKA+LI
Sbjct:   64 FAVLNTGIYECRSCGYKYDEAAGDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGNTLTSGQKAVLI 149

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: F6HTU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01590 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.161e-52
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEA GDPSYPIPPG QFDKLPDDWRCPTCGAA+SFFESKSVEIAGFAQNQQFGLGGN LTSGQKA+LI
Sbjct:   97 FAVLNTGIYECRSCGYKYDEAAGDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGNTLTSGQKAVLI 182

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: M5W043_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011413mg PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.316e-51
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = -2

Query:  154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411
            FAVLNTGIYECRSCG+KYDEAVGDPSYPIPPG QFDKLP+DWRCPTCGAA+SFF SKSVEIAGFAQNQQFGLGGNALTSGQKA+LI
Sbjct:  108 FAVLNTGIYECRSCGYKYDEAVGDPSYPIPPGLQFDKLPEDWRCPTCGAAQSFFVSKSVEIAGFAQNQQFGLGGNALTSGQKAVLI 193

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: Q0GBX1_MUSAC (Putative rubredoxin OS=Musa acuminata PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.183e-50
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = -2

Query:  163 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKA 411
            FAVLNTGIYECRSCG++YDEA GDPSYPIPPGFQF+KLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGN+LTSGQKA
Sbjct:   95 FAVLNTGIYECRSCGYRYDEAAGDPSYPIPPGFQFEKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLTSGQKA 177

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_METTH (Probable rubredoxin OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_155 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.999e-11
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = -2

Query:  247 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFE 387
            Y+CR CG+ YD   G+P    PPG  F+ LP+ WRCP+CGA K  F+
Sbjct:   14 YKCRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFK 60

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_DESVH (Rubredoxin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rub PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 3.722e-11
Identity = 27/48 (56.25%), Postives = 31/48 (64.58%), Query Frame = -2

Query:  244 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES 387
            Y C  CG++YD A GDP   + PG  FD LP DW CP CGA KS FE+
Sbjct:    4 YVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEA 51

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR3_CHLTE (Rubredoxin 3 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) GN=rub3 PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 5.609e-11
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = -2

Query:  238 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKS 387
            + C  CG++YD A GDP   I PG  F+ LP+DW CP CG  KSFFE  S
Sbjct:    4 WVCVPCGYEYDPADGDPENGIEPGTAFEDLPEDWVCPVCGVDKSFFEPVS 53

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_CHLTI (Rubredoxin OS=Chlorobaculum thiosulfatiphilum GN=rub PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.927e-11
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = -2

Query:  238 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKS 387
            Y C  CG+ YD A G+P  PI PG  F+ LP+DW CP CG  K  FE +S
Sbjct:    4 YVCSVCGYVYDPADGEPDDPIDPGTGFEDLPEDWVCPVCGVDKDLFEPES 53

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: HRB_MOOTA (High molecular weight rubredoxin OS=Moorella thermoacetica (strain ATCC 39073) GN=hrb PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.657e-10
Identity = 24/47 (51.06%), Postives = 28/47 (59.57%), Query Frame = -2

Query:  247 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFE 387
            Y+C  C + YD   GDP + I PG  F  LP+DW CP CGA K  FE
Sbjct:  181 YQCTICNYVYDPVQGDPEHGIAPGTPFADLPEDWTCPICGAGKDAFE 227

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_CLOSD (Rubredoxin OS=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) GN=CLOST_1462 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.072e-10
Identity = 24/50 (48.00%), Postives = 29/50 (58.00%), Query Frame = -2

Query:  238 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKS 387
            Y C  CG+ YD  VGDP   I PG  F  +P+DW CP CG  K  FE ++
Sbjct:    4 YVCTVCGYVYDPEVGDPDNNINPGTSFQDIPEDWVCPLCGVGKDQFEEEA 53

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_ACIAD (Rubredoxin OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=rubA PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 6.109e-10
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = -2

Query:  235 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSV 387
            Y+C  CG+ YDEA G P   I PG +++ +PDDW CP CG +K  FE   V
Sbjct:    4 YQCIVCGWIYDEAEGWPQDGIAPGTKWEDIPDDWTCPDCGVSKVDFEMIEV 54

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_HELMO (Rubredoxin OS=Heliobacillus mobilis PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.001e-9
Identity = 25/47 (53.19%), Postives = 29/47 (61.70%), Query Frame = -2

Query:  247 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFE 387
            Y C  CG+ YD A GDP + I PG  F+ LP DW CP CG +K  FE
Sbjct:    4 YGCLVCGYVYDPAKGDPDHGIAPGTAFEDLPADWVCPLCGVSKDEFE 50

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_DESVM (Rubredoxin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rub PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.052e-9
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = -2

Query:  247 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFE 387
            Y C  CG++YD A GDP   + PG  F+ +P DW CP CGA KS FE
Sbjct:    4 YVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFE 50

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR2_CLOPE (Rubredoxin-2 OS=Clostridium perfringens (strain 13 / Type A) GN=rubR2 PE=1 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.059e-9
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = -2

Query:  250 CRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFF 381
            C  CG+ YD AVGDP   + PG +F  +PDDW CP CG  KS F
Sbjct:    6 CDVCGYIYDPAVGDPDNGVEPGTEFKDIPDDWVCPLCGVDKSQF 49

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2TN91_GOSRA	6.355e-55	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
V4SF71_9ROSI	2.899e-53	95.35	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
U7E0Z1_POPTR	7.348e-53	94.19	Uncharacterized protein (Fragment) OS=Populus tric...	[more]
A0A067JUG3_JATCU	1.227e-52	94.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A061F296_THECC	1.246e-52	95.35	Rubredoxin-like superfamily protein OS=Theobroma c...	[more]
B9RET2_RICCO	2.257e-52	93.02	Rubredoxin, putative OS=Ricinus communis GN=RCOM_1...	[more]
A5B456_VITVI	2.573e-52	93.02	Putative uncharacterized protein OS=Vitis vinifera...	[more]
F6HTU5_VITVI	4.161e-52	93.02	Putative uncharacterized protein OS=Vitis vinifera...	[more]
M5W043_PRUPE	1.316e-51	93.02	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
Q0GBX1_MUSAC	1.183e-50	93.98	Putative rubredoxin OS=Musa acuminata PE=2 SV=2	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
RUBR_METTH	2.999e-11	51.06	Probable rubredoxin OS=Methanothermobacter thermau...	[more]
RUBR_DESVH	3.722e-11	56.25	Rubredoxin OS=Desulfovibrio vulgaris (strain Hilde...	[more]
RUBR3_CHLTE	5.609e-11	54.00	Rubredoxin 3 OS=Chlorobium tepidum (strain ATCC 49...	[more]
RUBR_CHLTI	6.927e-11	52.00	Rubredoxin OS=Chlorobaculum thiosulfatiphilum GN=r...	[more]
HRB_MOOTA	3.657e-10	51.06	High molecular weight rubredoxin OS=Moorella therm...	[more]
RUBR_CLOSD	5.072e-10	48.00	Rubredoxin OS=Clostridium sticklandii (strain ATCC...	[more]
RUBR_ACIAD	6.109e-10	49.02	Rubredoxin OS=Acinetobacter baylyi (strain ATCC 33...	[more]
RUBR_HELMO	1.001e-9	53.19	Rubredoxin OS=Heliobacillus mobilis PE=1 SV=1	[more]
RUBR_DESVM	1.052e-9	53.19	Rubredoxin OS=Desulfovibrio vulgaris (strain Miyaz...	[more]
RUBR2_CLOPE	1.059e-9	54.55	Rubredoxin-2 OS=Clostridium perfringens (strain 13...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024935	Rubredoxin domain	PRINTS	PR00163	RUBREDOXIN	coord: 5..21 score: 49.69 coord: 35..51 score: 58.82
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 6..51 e-value: 1.1E-18 score: 66.8
IPR004039	Rubredoxin-type fold	GENE3D	2.20.28.10		coord: 2..55 e-value: 1.6E-23 score: 81.6
IPR018527	Rubredoxin, iron-binding site	PROSITE	PS00202	RUBREDOXIN	coord: 35..45
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 101..101
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 81..100
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..80
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 3..68
None	No IPR available	TMHMM	TMhelix		coord: 81..100
IPR024934	Rubredoxin-like domain	PROSITE	PS50903	RUBREDOXIN_LIKE	coord: 3..54 score: 13.599

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0019940 ID=g.arboreum_cottongen_reftransV1_0019940; Name=g.arboreum_cottongen_reftransV1_0019940; organism=Gossypium arboreum; type=contig; length=412bp
GGCGGGGGGGCGTTTGATGGATTTTCCTATTTGCAGAAAAATATACCTTT
AAGGCAAAGAAAAATTACAGAAATTTATATTATGCACCCTACCTACCTAT
TGCAAAAAGTAGCCACTCAAGAAGAGCACAAAGAAGAAGAACAAACTGCC
ATAAATTAAGAGGGCTTTTTGACCAGAAGTAAGAGCATTGCCCCCTAAAC
CAAATTGCTGATTCTGAGCAAACCCAGCAATCTCAACACTCTTACTCTCA
AAGAAAGACTTTGCAGCCCCACAGGTAGGGCATCTCCAATCATCAGGCAG
CTTATCAAACTGAAACCCTGGTGGAATTGGATAGGAAGGATCACCCACTG
CTTCATCATACTTGAACCCACATGACCTGCACTCATATATCCCTGTGTTC
AACACTGCAAAC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR024935	Rubredoxin_dom
IPR004039	Rubredoxin-type_fold
IPR018527	Rubredoxin_Fe_BS
IPR024934	Rubredoxin-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0046872	metal ion binding

Search form

g.arboreum_cottongen_reftransV1_0019940, g.arboreum_cottongen_reftransV1_0019940 (contig) Gossypium arboreum

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