g.arboreum_cottongen_reftransV1_0019940, g.arboreum_cottongen_reftransV1_0019940 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A0D2TN91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G285800 PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 6.355e-55 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = -2 Query: 154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI Sbjct: 98 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 183
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: V4SF71_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002532mg PE=4 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 2.899e-53 Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = -2 Query: 154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411 FAVLNTGIYECRSCG+KYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAA+SFFESKSVEIAGFA+NQQFGLGGNALTSGQKA+LI Sbjct: 98 FAVLNTGIYECRSCGYKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAQSFFESKSVEIAGFAENQQFGLGGNALTSGQKAVLI 183
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: U7E0Z1_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0030s00410g PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 7.348e-53 Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = -2 Query: 154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411 FAVLNTGIYECRSCG+KYDEAVGDPSYP+PPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQ+GLGGNALTSGQK +LI Sbjct: 23 FAVLNTGIYECRSCGYKYDEAVGDPSYPLPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNALTSGQKTILI 108
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A067JUG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23458 PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.227e-52 Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = -2 Query: 154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411 FAVLNTGIYECRSCG+KYDEAVGDPSYPIPPG QFDKLP+DWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGN+LTSGQKA LI Sbjct: 86 FAVLNTGIYECRSCGYKYDEAVGDPSYPIPPGLQFDKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLTSGQKAALI 171
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A0A061F296_THECC (Rubredoxin-like superfamily protein OS=Theobroma cacao GN=TCM_026409 PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.246e-52 Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = -2 Query: 154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411 FAVLNTGIYECRSCGFKYDEAVGDPSYPI PG QFDKLP+DWRCPTCGAA+SFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI Sbjct: 102 FAVLNTGIYECRSCGFKYDEAVGDPSYPIAPGLQFDKLPEDWRCPTCGAAQSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 187
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: B9RET2_RICCO (Rubredoxin, putative OS=Ricinus communis GN=RCOM_1428560 PE=4 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 2.257e-52 Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = -2 Query: 154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411 FAVLNTGIYECRSCG+KYDE VGDP+YPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGN+LTSGQK +LI Sbjct: 92 FAVLNTGIYECRSCGYKYDEGVGDPTYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLTSGQKTILI 177
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: A5B456_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016717 PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.573e-52 Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = -2 Query: 154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411 FAVLNTGIYECRSCG+KYDEA GDPSYPIPPG QFDKLPDDWRCPTCGAA+SFFESKSVEIAGFAQNQQFGLGGN LTSGQKA+LI Sbjct: 64 FAVLNTGIYECRSCGYKYDEAAGDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGNTLTSGQKAVLI 149
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: F6HTU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01590 PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 4.161e-52 Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = -2 Query: 154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411 FAVLNTGIYECRSCG+KYDEA GDPSYPIPPG QFDKLPDDWRCPTCGAA+SFFESKSVEIAGFAQNQQFGLGGN LTSGQKA+LI Sbjct: 97 FAVLNTGIYECRSCGYKYDEAAGDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGNTLTSGQKAVLI 182
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: M5W043_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011413mg PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 1.316e-51 Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = -2 Query: 154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKALLI 411 FAVLNTGIYECRSCG+KYDEAVGDPSYPIPPG QFDKLP+DWRCPTCGAA+SFF SKSVEIAGFAQNQQFGLGGNALTSGQKA+LI Sbjct: 108 FAVLNTGIYECRSCGYKYDEAVGDPSYPIPPGLQFDKLPEDWRCPTCGAAQSFFVSKSVEIAGFAQNQQFGLGGNALTSGQKAVLI 193
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Match: Q0GBX1_MUSAC (Putative rubredoxin OS=Musa acuminata PE=2 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 1.183e-50 Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = -2 Query: 163 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNALTSGQKA 411 FAVLNTGIYECRSCG++YDEA GDPSYPIPPGFQF+KLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGN+LTSGQKA Sbjct: 95 FAVLNTGIYECRSCGYRYDEAAGDPSYPIPPGFQFEKLPDDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLTSGQKA 177
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_SYNY3 (Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.295e-15 Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -2 Query: 154 FAVLNTGIYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVEIA--GFAQNQQFGLGGNALTSGQKALLI 411 A L + +ECR+CG+ Y + GD + PG F+ LP +W+CP CGA +++F S A GFA+N +G G N ++ G+K LLI Sbjct: 10 LAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNYFISTGETDAPSGFAENLNYGFGFNRMSGGKKNLLI 97
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_ANAVT (Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rub PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.525e-15 Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = -2 Query: 154 AVLNTGI--YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES--KSVEIAGFAQNQQFGLGGNALTSGQKALLI 408 AV NT + +ECRSCG+ Y+ GD + I P F +LP +WRCP C A K+ F + + +GF +N +GLG N LT QK +LI Sbjct: 5 AVENTVLDRFECRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGPAGTASGFRENLGYGLGVNKLTPAQKNILI 93
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_NOSS1 (Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rub PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.260e-15 Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = -2 Query: 154 AVLNTGI--YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES--KSVEIAGFAQNQQFGLGGNALTSGQKALLI 408 AV NT + +ECRSCG+ Y+ GD + I P F +LP +WRCP C A K+ F + + +GF +N +GLG N LT QK +LI Sbjct: 5 AVENTVLDRFECRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGPAGTASGFRENLGYGLGVNKLTPAQKNILI 93
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR4_RHOSQ (Rubredoxin 4 OS=Rhodococcus sp. (strain Q15) GN=rubA4 PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 4.539e-13 Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = -2 Query: 232 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVE 390 +Y+C CGF+YDEAVG P I PG ++D +P+DW CP CGAAKS F VE Sbjct: 6 LYQCAQCGFEYDEAVGWPEDGIEPGTRWDDIPEDWSCPDCGAAKSDFFMVEVE 58
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR4_RHOER (Rubredoxin 4 OS=Rhodococcus erythropolis GN=rubA4 PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 4.539e-13 Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = -2 Query: 232 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVE 390 +Y+C CGF+YDEAVG P I PG ++D +P+DW CP CGAAKS F VE Sbjct: 6 LYQCAQCGFEYDEAVGWPEDGIEPGTRWDDIPEDWSCPDCGAAKSDFFMVEVE 58
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_DESGI (Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.076e-12 Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = -2 Query: 241 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESK 390 IY C CG++YD A GDP I PG +F+ LPDDW CP CGA+K FE + Sbjct: 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ 52
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR2_RHOER (Rubredoxin-2 OS=Rhodococcus erythropolis GN=rubA2 PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.480e-12 Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = -2 Query: 232 IYECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFESKSVE 390 ++ C CGF+YDEA+G P I PG ++D++P+DW CP CGAAK FE V+ Sbjct: 10 LFRCLQCGFEYDEAIGWPDDGIEPGTRWDEIPEDWSCPDCGAAKVDFEMVEVD 62
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_THETC (Rubredoxin OS=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) GN=Tthe_0549 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 3.373e-12 Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = -2 Query: 244 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES 387 ++C CG+ YD VGDP+ IPPG +F+ LPDDW CP CG K FE Sbjct: 4 WQCTVCGYIYDPEVGDPTQNIPPGTKFEDLPDDWVCPDCGVGKDQFEK 51
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_PYRFU (Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rub PE=1 SV=2) HSP 1 Score: 61.2326 bits (147), Expect = 6.633e-12 Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = -2 Query: 244 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFES 387 + C+ CG+ YDE GDP I PG +F++LPDDW CP CGA KS FE Sbjct: 4 WVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEK 51
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Match: RUBR_PYRAB (Rubredoxin OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rub PE=1 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 1.655e-11 Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = -2 Query: 247 YECRSCGFKYDEAVGDPSYPIPPGFQFDKLPDDWRCPTCGAAKSFFE 387 + C+ CG+ YDE GDP I PG +F+ LPDDW CP CGA KS FE Sbjct: 4 WRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFE 50 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0019940 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019940 ID=g.arboreum_cottongen_reftransV1_0019940; Name=g.arboreum_cottongen_reftransV1_0019940; organism=Gossypium arboreum; type=contig; length=412bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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