g.arboreum_cottongen_reftransV1_0021001, g.arboreum_cottongen_reftransV1_0021001 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0021001
Unique Name	g.arboreum_cottongen_reftransV1_0021001
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	939

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0021001:1..939 . Chr1:64936421..64937359 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Match: A0A0B0NLQ8_GOSAR (Pentatricopeptide repeat-containing , chloroplastic-like protein OS=Gossypium arboreum GN=F383_18179 PE=4 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.915e-114
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = -1

Query:  424 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPDVAHDGQK 939
            RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPDVAHDGQK
Sbjct:  556 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPDVAHDGQK 727

HSP 2 Score: 63.1586 bits (152), Expect = 8.705e-8
Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = -1

Query:  604 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFK-RAFYYHKQMVKNGQVPDVKSYEKL 936
            V +N L+D + K  Q  E   + +E    GL PT  T+N+LM+AY+R  Q   + +LL EM  + L PD  +Y+ +I A+ R +    RA     +M K G  P   SY  L
Sbjct:  381 VVYNTLMDAYCKSNQIEEVEGLFAEMKMKGLMPTSATFNILMDAYSRRMQPEIVEKLLVEMQDMGLNPDVKSYTCLISAYGRQKKMSDRAADAFLRMKKVGLKPTSHSYTSL 492

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BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Match: A0A0D2N683_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G062100 PE=4 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 3.552e-111
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = -1

Query:  424 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPDVAHDGQK 936
            VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEM VLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSY+KLRS+LDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPDVAHDGQK
Sbjct:  560 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMMVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYKKLRSILDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPDVAHDGQK 730

HSP 2 Score: 63.1586 bits (152), Expect = 8.483e-8
Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = -1

Query:  604 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFK-RAFYYHKQMVKNGQVPDVKSYEKL 936
            V +N L+D + K  Q  E   + +E    GL PT  T+N+LM+AY+R  Q   + +LL EM  + L PD  +Y+ +I A+ R +    RA     +M K G  P   SY  L
Sbjct:  384 VVYNTLMDAYGKSNQIEEVEGLFAEMKTKGLMPTSATFNILMDAYSRRMQPEIVEKLLVEMQDMGLNPDVKSYTCLISAYGRQKKMSDRAADAFLRMKKVGLKPTSHSYTSL 495

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Match: A0A061G5M6_THECC (Pentatricopeptide repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_014542 PE=4 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.977e-101
Identity = 153/172 (88.95%), Postives = 166/172 (96.51%), Query Frame = -1

Query:  424 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPDVAHDGQK 939
            RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPT+MTYNMLMNAYARGGQH KLPQLLKEM  L+LKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVK+GQVPDVKSYEKL+++LDVKAAK+NK+D+SAILGIINSKMGMVKAKRKTKKDE WK KKR+H+TPDVAH G++
Sbjct:  551 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTLMTYNMLMNAYARGGQHQKLPQLLKEMAALNLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKSGQVPDVKSYEKLKAILDVKAAKKNKKDRSAILGIINSKMGMVKAKRKTKKDELWKNKKRHHKTPDVAHGGRQ 722

HSP 2 Score: 64.3142 bits (155), Expect = 3.551e-8
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = -1

Query:  604 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFK-RAFYYHKQMVKNGQVPDVKSYEKL 936
            + +N L+D ++K  Q  E   + +E    GL PT  T+N+LM+AY+R  Q   +  LL EM  + LKPD+ +Y+ +I A+ R +    +A     +M K G  P   SY  L
Sbjct:  376 IVYNTLMDAYSKSNQIEEVEGLFAEMKAKGLVPTSATFNILMDAYSRRMQPEIVENLLLEMQDMGLKPDAKSYTCLISAYGRQKKMSDKAADAFLRMKKVGVKPTSHSYTSL 487

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BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Match: A0A067FPS3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044251mg PE=4 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.994e-90
Identity = 145/170 (85.29%), Postives = 158/170 (92.94%), Query Frame = -1

Query:  430 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPDVAHDG 939
            RVTFNILLDGFAKQGQY+EARDV+SEFGKIGLQPT+MTYNMLMNAY RGGQ  KLPQLLKEM  L++KPDSVTYSTMIYAFVRVRDFKRAF+YHKQMVK+GQVPDVKSYEKLRS+LDVK A +N+RDKSAILGIINSKMGMVKAK+K KKDEFWKYKKR+ RT   AH+G
Sbjct:  517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSHAHNG 686

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Match: V4TNK4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019054mg PE=4 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.088e-89
Identity = 145/170 (85.29%), Postives = 158/170 (92.94%), Query Frame = -1

Query:  430 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPDVAHDG 939
            RVTFNILLDGFAKQGQY+EARDV+SEFGKIGLQPT+MTYNMLMNAY RGGQ  KLPQLLKEM  L++KPDSVTYSTMIYAFVRVRDFKRAF+YHKQMVK+GQVPDVKSYEKLRS+LDVK A +N+RDKSAILGIINSKMGMVKAK+K KKDEFWKYKKR+ RT   AH+G
Sbjct:  547 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSHAHNG 716

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Match: A0A0A0LWH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050000 PE=4 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.475e-88
Identity = 137/165 (83.03%), Postives = 152/165 (92.12%), Query Frame = -1

Query:  445 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPD 939
            RVTFN LLDGFAK G Y+EARDVISEF KIGLQPTVMTYNMLMNAYARGGQHLKLPQLL+EM   DLKPDSVTYSTMIYAFVRVRDFKRAF+YHK+MVK+GQVPDVKSY+KL+S+LDVK A +N++DKSAILGIINSKMGMVKAK++ KKDEFWK K+R+ RT D
Sbjct:  543 RVTFNTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAARDLKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIINSKMGMVKAKKQGKKDEFWKTKRRHVRTQD 707

HSP 2 Score: 66.2402 bits (160), Expect = 7.642e-9
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = -1

Query:  604 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFK-RAFYYHKQMVKNGQVPDVKSYEKL 936
            + +N ++D F+K  Q  EA  V +E    G++PT  ++N+LMNAY+R  Q   + +LL EM  + L+P+  +Y+ +I A+ R +     A     +M KNG  P   SY  L
Sbjct:  368 IMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTAL 479

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Match: A0A059CYA7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00165 PE=4 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.903e-87
Identity = 131/165 (79.39%), Postives = 150/165 (90.91%), Query Frame = -1

Query:  445 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPD 939
            RVTFNILLDGFAKQG Y+EARDVISEFGKIGLQPTVMTYNML+NAYARGGQHLKLPQLLKEM  L+LKPDS+TYSTMIYAFVRVRDF+RAF+YHK+MVK+GQVPD +SY+KLR +LDVKAA  N++D+SAILGI+NSKMG V+ K+K KKDEFWK + R+ R  D
Sbjct:  344 RVTFNILLDGFAKQGHYVEARDVISEFGKIGLQPTVMTYNMLINAYARGGQHLKLPQLLKEMATLNLKPDSITYSTMIYAFVRVRDFRRAFFYHKKMVKSGQVPDARSYQKLREILDVKAALNNRKDRSAILGIVNSKMGSVRPKKKGKKDEFWKDRIRHRRVLD 508

HSP 2 Score: 66.6254 bits (161), Expect = 5.522e-9
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = -1

Query:  604 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFK-RAFYYHKQMVKNGQVPDVKSYEKL 936
            + +N L+D ++K  Q  EA  + +E    GL+PT  T+N+LM+AY+R  Q   + + LK+M  + L+P++ +Y+ +I A+ R R     A     +M + G  P++ SY  L
Sbjct:  169 IVYNTLMDAYSKSNQIEEAEGLFAEMKVKGLKPTAATFNILMDAYSRRIQPEIVKKFLKDMQEMGLEPNATSYTCLISAYGRQRKMSDMAADAFMRMRRVGIKPNLHSYTAL 280

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Match: M5WWE6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004407mg PE=4 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 6.818e-82
Identity = 132/165 (80.00%), Postives = 150/165 (90.91%), Query Frame = -1

Query:  445 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPD 939
            +VTFN LLDGFAKQG Y EARDVISEFG IGLQPTVMTYNMLMNAYARGGQH KLPQLLKEM  L+LKPDSVTYSTMIYA+VRVRDFKRAF+YHKQMVK+GQ+PD +SYEKLR++LDVKAA++NK+D+SAILGIINSKMG++K K+K KKDEFWK KK+ +   D
Sbjct:  344 KVTFNTLLDGFAKQGHYTEARDVISEFGNIGLQPTVMTYNMLMNAYARGGQHSKLPQLLKEMAALNLKPDSVTYSTMIYAYVRVRDFKRAFFYHKQMVKSGQMPDARSYEKLRAILDVKAARKNKKDRSAILGIINSKMGLLKIKKKGKKDEFWKNKKKRYVRTD 508

HSP 2 Score: 63.1586 bits (152), Expect = 6.946e-8
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = -1

Query:  604 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFK-RAFYYHKQMVKNGQVPDVKSYEKL 936
            + +N L+D F    Q  EA  + +E    G++PT  T+N+LM+AY+R  Q   + +LL EM  + L+P+  +Y+ +I A+ R +     A     +M K G  P   SY  L
Sbjct:  169 IVYNTLMDAFCNSNQVEEAEGLFAEMKSRGIKPTAATFNILMSAYSRKMQTEIVEKLLVEMQDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKAGISPTSHSYTAL 280

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Match: D7MQ43_ARALL (EMB1006 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_918038 PE=4 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.163e-81
Identity = 127/165 (76.97%), Postives = 145/165 (87.88%), Query Frame = -1

Query:  445 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPD 939
            R+T+N LLDGFAKQG YIEARDV+SEFGK+GLQP+VMTYNMLMNAYARGGQ  KLPQLLKEM  L+LKPDS+TYSTMIYAFVRVRDFKRAF+YHK MVK+GQVPD +SYEKLR++L+ K   +N++DK+AILGIINSK G VKAK K KKDEFWKYKK    +PD
Sbjct:  555 RITYNTLLDGFAKQGLYIEARDVVSEFGKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILENKVKTKNRKDKTAILGIINSKFGRVKAKTKGKKDEFWKYKKNQTTSPD 719

HSP 2 Score: 62.3882 bits (150), Expect = 1.541e-7
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = -1

Query:  604 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFK-RAFYYHKQMVKNGQVPDVKSYEKL 936
            + +N L+D + K     E   + +E    GL+PT  TYN+LM+AYAR  Q   +  LL+EM  L L+P+  +++ +I A+ R +     A     +M K G  P   SY  L
Sbjct:  380 IVYNTLMDAYNKSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTAL 491

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Match: B9I3J9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09340g PE=4 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 4.639e-81
Identity = 131/169 (77.51%), Postives = 152/169 (89.94%), Query Frame = -1

Query:  433 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMVKAKRKTKKDEFWKYKKRNHRTPDVAHD 939
            RVTFNILLDGFAKQG Y+EARDVI+EF K GL PTVMTYNMLMNAYARGGQ  KLPQLLKEM  L L+PDS+TY+TMIYA+VRVRDF+RAF+YHK MVK+G+VPD KSY+KLR++LDVKAA +N+RDKSAILGIINS+MGM+K K+K KKDEFWK KKR+ R P+V+HD
Sbjct:  553 RVTFNILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGGQDSKLPQLLKEMATLKLEPDSITYTTMIYAYVRVRDFRRAFFYHKMMVKSGKVPDAKSYQKLRAILDVKAAIKNRRDKSAILGIINSQMGMLKVKKKRKKDEFWKNKKRHVRAPNVSHD 721

HSP 2 Score: 61.6178 bits (148), Expect = 3.098e-7
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = -1

Query:  691 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVR 936
            + +N L+D ++K  Q  EA  + SE    GL+PT  T+N+LM+AY+R  Q   + +LL EM    L P++ +Y+ +I A+ R
Sbjct:  378 IIYNTLMDSYSKSNQIEEAEGLYSEMQAKGLKPTSATFNILMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGR 459

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy Swiss-Prot
Match: PP250_ARATH (Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.160e-11
Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = -1

Query:  604 TFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKL 933
            T+N ++D + K GQ  EA +      + G+ PT +T+N +++ Y   GQ  ++  L+K M  L   PD+ TY+ +I    +  D +RA  Y K+M  +G  PD  SY  L
Sbjct:  300 TYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK-LHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTL 408

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy Swiss-Prot
Match: PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.300e-11
Identity = 35/111 (31.53%), Postives = 58/111 (52.25%), Query Frame = -1

Query:  604 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKL 936
            VT+  L+ G+  +G+  +A  +  E    G+ P++ T+  L++   R G      +L  EM   ++KP+ VTY+ MI  +    D  +AF + K+M + G VPD  SY  L
Sbjct:  473 VTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPL 583

HSP 2 Score: 65.0846 bits (157), Expect = 2.288e-10
Identity = 31/106 (29.25%), Postives = 57/106 (53.77%), Query Frame = -1

Query:  616 TFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKS 933
            T+N+L+ GF +QG+  EA ++I+     G+ P  +TY  ++N   R     K  +L   MT   ++PD V Y+T+I+      +  +A     +M++ G +P+ K+
Sbjct:  789 TYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894

HSP 3 Score: 61.6178 bits (148), Expect = 3.360e-9
Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = -1

Query:  613 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSY 939
             + +  LL GF ++G+  EA  V  E  + G+   ++ Y +L++   +         LLKEM    LKPD V Y++MI A  +  DFK AF     M+  G VP+  +Y
Sbjct:  612 EICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTY 720

HSP 4 Score: 56.6102 bits (135), Expect = 1.686e-7
Identity = 31/115 (26.96%), Postives = 56/115 (48.70%), Query Frame = -1

Query:  592 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSML 936
            VT++IL+D F ++G+   A   + E    GL+ +V  YN L+N + + G        + EM    L+P  VTY++++  +       +A   + +M   G  P + ++  L S L
Sbjct:  403 VTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.095e-11
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = -1

Query:  574 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAK 936
            +T+N L+DGF K  +  EA ++  E    G+    +TYN L++   +  +     QL+ +M +   KPD  TY++++  F R  D K+A    + M  NG  PD+ +Y  L S L  KA +
Sbjct:  471 ITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL-CKAGR 590

HSP 2 Score: 63.5438 bits (153), Expect = 7.361e-10
Identity = 32/110 (29.09%), Postives = 59/110 (53.64%), Query Frame = -1

Query:  604 TFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKL 933
            T+N+L+D    +G+  EA +++ +    G   +V+TYN L++ + +  +  +  ++  EM V  +  +SVTY+T+I    + R  + A     QM+  GQ PD  +Y  L
Sbjct:  437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546

HSP 3 Score: 61.2326 bits (147), Expect = 4.488e-9
Identity = 30/110 (27.27%), Postives = 56/110 (50.91%), Query Frame = -1

Query:  604 TFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKL 933
            TFN L++G  K G    A +++    + G  P V TYN +++   + G+  +  ++L +M   D  P++VTY+T+I    +    + A    + +   G +PDV ++  L
Sbjct:  297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSL 406

HSP 4 Score: 54.6842 bits (130), Expect = 5.422e-7
Identity = 35/142 (24.65%), Postives = 68/142 (47.89%), Query Frame = -1

Query:  514 VTFNILLDGFAKQGQYIEARDVISEFG-KIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAILGIINSKMGMV 936
            V+ N+++ GF K+G+  +A + I E   + G  P   T+N L+N   + G      +++  M      PD  TY+++I    ++ + K A     QM+     P+  +Y  L S L     K+N+ +++  L  + +  G++
Sbjct:  260 VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTL----CKENQVEEATELARVLTSKGIL 397

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.419e-11
Identity = 35/111 (31.53%), Postives = 61/111 (54.95%), Query Frame = -1

Query:  604 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKL 936
            VT+N LL G+ KQG+Y E + V +E  +  + P ++TY+ L++ Y++GG + +  ++ +E     L+ D V YS +I A  +      A     +M K G  P+V +Y  +
Sbjct:  480 VTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSI 590

HSP 2 Score: 61.2326 bits (147), Expect = 4.150e-9
Identity = 34/112 (30.36%), Postives = 61/112 (54.46%), Query Frame = -1

Query:  604 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKL 939
            RV++N LL  + K G+  EA D++ E   +G++  V+TYN L+  Y + G++ ++ ++  EM    + P+ +TYST+I  + +   +K A    ++    G   DV  Y  L
Sbjct:  444 RVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSAL 555

HSP 3 Score: 60.077 bits (144), Expect = 1.271e-8
Identity = 37/115 (32.17%), Postives = 59/115 (51.30%), Query Frame = -1

Query:  595 RVTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSM 939
            R+TFN LL   ++ G +  AR++  E     ++  V +YN L++A  +GGQ     ++L +M V  + P+ V+YST+I  F +   F  A     +M   G   D  SY  L S+
Sbjct:  339 RITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSI 453

HSP 4 Score: 54.6842 bits (130), Expect = 5.817e-7
Identity = 28/111 (25.23%), Postives = 62/111 (55.86%), Query Frame = -1

Query:  604 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKL 936
            V+++ ++DGFAK G++ EA ++  E   +G+    ++YN L++ Y + G+  +   +L+EM  + +K D VTY+ ++  + +   +        +M +   +P++ +Y  L
Sbjct:  410 VSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTL 520

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy Swiss-Prot
Match: PP292_ARATH (Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.580e-11
Identity = 40/130 (30.77%), Postives = 69/130 (53.08%), Query Frame = -1

Query:  547 VTFNILLDGFAKQGQYIEARDVISEFGKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLKEMTVLDLKPDSVTYSTMIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYEKLRSMLDVKAAKQNKRDKSAI 936
            VT+N L+DG+ + G+   A++V+S   +  ++P V+T N ++    R            +M    +K + VTY T+I+A   V + ++A Y++++M++ G  PD K Y  L S L      Q +RD  AI
Sbjct:  407 VTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGL-----CQVRRDHDAI 531

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NLQ8_GOSAR	1.915e-114	100.00	Pentatricopeptide repeat-containing , chloroplasti...	[more]
A0A0D2N683_GOSRA	3.552e-111	98.25	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061G5M6_THECC	6.977e-101	88.95	Pentatricopeptide repeat superfamily protein isofo...	[more]
A0A067FPS3_CITSI	3.994e-90	85.29	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4TNK4_9ROSI	1.088e-89	85.29	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A0A0LWH7_CUCSA	2.475e-88	83.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
A0A059CYA7_EUCGR	1.903e-87	79.39	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
M5WWE6_PRUPE	6.818e-82	80.00	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
D7MQ43_ARALL	1.163e-81	76.97	EMB1006 OS=Arabidopsis lyrata subsp. lyrata GN=ARA...	[more]
B9I3J9_POPTR	4.639e-81	77.51	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0021001 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
PP250_ARATH	1.160e-11	33.64	Pentatricopeptide repeat-containing protein At3g23...	[more]
PP437_ARATH	1.300e-11	31.53	Putative pentatricopeptide repeat-containing prote...	[more]
PP281_ARATH	2.095e-11	32.23	Pentatricopeptide repeat-containing protein At3g53...	[more]
PP178_ARATH	2.419e-11	31.53	Pentatricopeptide repeat-containing protein At2g31...	[more]
PP292_ARATH	2.580e-11	30.77	Pentatricopeptide repeat-containing protein At3g61...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 36..70 e-value: 4.7E-9 score: 33.9 coord: 2..35 e-value: 6.5E-7 score: 27.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 2..46 e-value: 1.6E-9 score: 37.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1..33 score: 9.536
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 34..68 score: 11.192
None	No IPR available	PANTHER	PTHR24015:SF606	SUBFAMILY NOT NAMED	coord: 1..76
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..76

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0021001 ID=g.arboreum_cottongen_reftransV1_0021001; Name=g.arboreum_cottongen_reftransV1_0021001; organism=Gossypium arboreum; type=contig; length=939bp
AAACTACAAAGGCTGCATGGCATCTATTAATTATTATAACTACTATATTT
AGAAAAGTATTTGCAAAAGTTAGCCTAGAAAGAGATGCAAACATAAATGA
GGCTAACCTAACAGTAGCCATTTAATTCCCATGATATGTTATCATAGTTC
AAACCAATTTATCAGATATTATCTCCTTTACCTTATTGAATCTCGCGATT
TTGTCCAGAAAAGATGCCTCACACGTTTGAAGAATGTTGAAGAGACTATG
AACACTTGTATATCCAATCTAAAAGACCATGGCCTCTCCTAGAGAGCTAT
GAGGAGATGAAATCAACTCGGTGTACGACCCTGACACATTTTCATATCCA
ACGGACCAACACCAATATCCAAATACTTATGTCGAACAACTTAAGCTCTC
ATGTAACGGAAAGGTGGCATTCATTTCTGACCATCATGAGCAACATCGGG
AGTTCTATGGTTCCTTTTCTTATACTTCCAGAACTCATCTTTCTTTGTTT
TCCTTTTTGCTTTCACCATCCCCATTTTACTGTTGATTATACCTAGTATA
GCACTCTTATCCCTCTTGTTCTGTTTTGCAGCTTTTACATCCAACATTGA
TCTGAGCTTTTCGTAGGACTTAACATCTGGAACTTGCCCGTTTTTCACCA
TTTGCTTGTGATAATAGAATGCCCTCTTGAAATCCCGAACACGAACAAAA
GCATAGATCATTGTTGAATAAGTGACTGAATCCGGTTTTAAATCAAGAAC
CGTCATTTCTTTCAACAATTGTGGTAATTTCAGGTGTTGGCCTCCTCTTG
CATATGCATTCATTAGCATATTATATGTCATCACCGTTGGTTGTAACCCA
ATCTTCCCAAACTCGGAAATAACATCCCTTGCTTCAATATATTGACCTTG
TTTTGCAAATCCGTCGAGAAGGATGTTGAAAGTAACGCG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_rpt

Search form

g.arboreum_cottongen_reftransV1_0021001, g.arboreum_cottongen_reftransV1_0021001 (contig) Gossypium arboreum

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