g.arboreum_cottongen_reftransV1_0008835, g.arboreum_cottongen_reftransV1_0008835 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008835
Unique Nameg.arboreum_cottongen_reftransV1_0008835
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1672
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeg.arboreum_cottongen_reftransV1_0008835:1..1672 .
Chr10:55188767..55193317 +		n/a
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A059A8Y2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00005 PE=3 SV=1)

HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0
Identity = 309/367 (84.20%), Postives = 339/367 (92.37%), Query Frame = -3 
Query:  333 DPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1433
            DPRVLLGMSE  LQQLAV+ GQQSYRGKQLH LIYKRK +EI+DFSHLP  FRN+L +AGW++GRSP+YHTVTAADGTVKLL+KLEDNRLIETVGIPVEDEKGS+RLTACVSSQVGCPL+CSFCATGKGG+SRNLQ HEIIEQVLAIE+ FKHRV NVVFMGMGEPMLNLKSVL+AH+CLNKDVQIGQRMITISTVGVPNTIKKLASHK+QSTLAVSLHA NQKLRE IVPSAKSYPL+AIMKDC+DYF ETSRRVSFEYALLAGVND+ E A ELAELLHEWGRG HVNLIPFNPI+GS+Y+RP+KK V AFA  LESRKI VS+RQTRGLDASAACGQLRN FQKSPL+ E+D  +SQ ++A+AC
Sbjct:   42 DPRVLLGMSEQQLQQLAVDLGQQSYRGKQLHQLIYKRKVREIEDFSHLPLVFRNELQEAGWRVGRSPVYHTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGSVRLTACVSSQVGCPLKCSFCATGKGGFSRNLQAHEIIEQVLAIEETFKHRVKNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKIQSTLAVSLHAPNQKLRESIVPSAKSYPLNAIMKDCQDYFQETSRRVSFEYALLAGVNDAEEHAIELAELLHEWGRGNHVNLIPFNPIDGSDYKRPSKKAVLAFASVLESRKIAVSVRQTRGLDASAACGQLRNKFQKSPLLAETDEMQSQPEIAMAC 408
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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A0A0KLM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G181470 PE=3 SV=1)

HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0
Identity = 305/413 (73.85%), Postives = 354/413 (85.71%), Query Frame = -3 
Query:  369 MFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDE--KGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESD 1601
            M A   +++  VC   +ARA R R             PSRNL+ S   S+  +P   P+VL+G+S+ +LQQLA++FGQ+ YRGKQLH LIYKRK KE+++F++LP  FR DL +AGW++GRSP+Y +VTAADGTVKLLLKL+DNRLIETVGIPVED+  KGS+RLTAC+SSQVGCPLRCSFCATGKGG+SRNLQRHEI+EQV AIEDIF HRVTNVVFMGMGEPMLN+KSVL+AH+CLNKDVQIGQRMITISTVGVPNTI++LASHKLQSTLAVSLHA NQKLRE IVPSAK+YPL+A+MKDCRDYF +TSRRVSFEYALLAGVND+VE A ELA+LLHEWG GYHVNLIPFNPIEGSEY+RP KK V AF  ALES KITVS+RQTRGLDA+AACGQLRN FQK+PL+++SD
Sbjct:    1 MIAISTALIHQVCSPSVARALRPRCVAAV--------PSRNLSTSISPSARPSPEA-PKVLIGLSDQELQQLALDFGQEKYRGKQLHQLIYKRKVKEVEEFTNLPLKFRTDLQEAGWRVGRSPVYQSVTAADGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQVFAIEDIFNHRVTNVVFMGMGEPMLNMKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIQRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEALMKDCRDYFLQTSRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPIEGSEYQRPYKKAVMAFVAALESHKITVSVRQTRGLDANAACGQLRNQFQKNPLLVDSD 404
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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A078G4W0_BRANA (BnaC04g05780D protein OS=Brassica napus GN=BnaC04g05780D PE=3 SV=1)

HSP 1 Score: 639.417 bits (1648), Expect = 0.000e+0
Identity = 321/422 (76.07%), Postives = 368/422 (87.20%), Query Frame = -3 
Query:  333 ISMLQH-VCVVPLAR-ATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREES--QSDVAVAC 1586
            I+ML + V  VP++R   R  S + +A+A +T  PS     S P   ARAPHVD +VLLGMSE +LQQLA++ GQ+ YRGKQLHHLIYKRKAK+++DFS+LPQ FR +L+++G+K+GRSPIY TVTA DGT+KLLLKLEDN LIETVGIPV++EKG  RLTACVSSQVGCPLRCSFCATGKGG+SRNLQRHEIIEQVLAIED+FKHRVTNVVFMGMGEPMLNLKSVLDAH+CLNKD++IGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQ LRE IVPSAK+YPL+AIM DCRDYF ET+RRVSFEYALLAGVNDSVE A ELAELL EWG+ YHVNLIP+NPIEGSEY+RP KK V AFA ALESRKIT S+RQTRGL+A+AACGQLRN FQKSPL+ E+D +ES  +++ AV+C
Sbjct:    9 IAMLHNLVFTVPISRMVVRRYSLSTTAAAISTAVPSLKPASSKP---ARAPHVDSQVLLGMSEPELQQLAIKLGQEGYRGKQLHHLIYKRKAKQVEDFSNLPQTFRKELVESGYKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQEEKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAIMSDCRDYFQETNRRVSFEYALLAGVNDSVENALELAELLREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFAAALESRKITASVRQTRGLEANAACGQLRNKFQKSPLLAETDGQESKPEAEEAVSC 427
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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A0D3BQH6_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 310/388 (79.90%), Postives = 349/388 (89.95%), Query Frame = -3 
Query:  333 PSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREES--QSDVAVAC 1490
            PS   T S P   ARAPHVD +VLLGMSE +LQQLA++ GQ+ YRGKQLHHLIYKRKAK+++DFS+LPQ FR +L+++G+K+GRSPIY TVTA DGT+KLLLKLEDN LIETVGIPV++EKG  RLTACVSSQVGCPLRCSFCATGKGG+SRNLQRHEIIEQVLAIED+FKHRVTNVVFMGMGEPMLNLKSVLDAH+CLNKD++IGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQ LRE IVPSAK+YPL+AIM DCRDYF ET+RRVSFEYALLAGVNDSVE A ELAELL EWG+ YHVNLIP+NPIEGSEY+RP KK V AFA ALESRKIT S+RQTRGL+A+AACGQLRN FQKSPL+ E+D +ES  +++ AV+C
Sbjct:   46 PSLKPTTSKP---ARAPHVDSQVLLGMSEPELQQLAIKLGQEGYRGKQLHHLIYKRKAKQVEDFSNLPQTFRKELVESGYKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQEEKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAIMSDCRDYFQETNRRVSFEYALLAGVNDSVENALELAELLREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFAAALESRKITASVRQTRGLEANAACGQLRNKFQKSPLLAETDGQESKPEAEEAVSC 430
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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: M4CLD9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra005026 PE=3 SV=1)

HSP 1 Score: 634.024 bits (1634), Expect = 0.000e+0
Identity = 307/381 (80.58%), Postives = 347/381 (91.08%), Query Frame = -3 
Query:  333 PTSS--ARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREES--QSDVAVAC 1463
            P SS  ARAPHVD +VLLGMSE +LQQLA++ GQ+ YRGKQLHHLIYKRKAK+++DFS+LPQ FR +L+++G+K+GRSPIY TVTA DGT+KLLLKLEDN LIETVGIPV++EKG  RLTACVSSQVGCPLRCSFCATGKGG+SRNLQRHEIIEQVLAIED+FKHRVTNVVFMGMGEPMLNLKSVLDAH+CLNKD++IGQRMITISTVGVPNTIKKLA+HKLQSTLAVSLHA NQ LRE IVPSAK+YPL+AIM DCRDYF ET+RRVSFEYALLAGVNDSVE A ELAELL EWG+ YHVNLIP+NPIEGSEY+RP KK V AFA ALESRKIT S+RQTRGL+A+AACGQLRN FQKSPL+ E+D +ES  +++ AV+C
Sbjct:   50 PASSKPARAPHVDSQVLLGMSEPELQQLAIKLGQEGYRGKQLHHLIYKRKAKQVEDFSNLPQTFRKELVESGYKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQEEKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDIEIGQRMITISTVGVPNTIKKLAAHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAIMSDCRDYFQETNRRVSFEYALLAGVNDSVENALELAELLREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFAAALESRKITASVRQTRGLEANAACGQLRNKFQKSPLLAETDGQESKPEAEEAVSC 430
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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A078CCM6_BRANA (BnaA05g05920D protein OS=Brassica napus GN=BnaA05g05920D PE=3 SV=1)

HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 307/381 (80.58%), Postives = 347/381 (91.08%), Query Frame = -3 
Query:  333 PTSS--ARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREES--QSDVAVAC 1463
            P SS  ARAPHVD +VLLGMSE +LQQLA++ GQ+ YRGKQLHHLIYKRKAK+++DFS+LPQ FR +L+++G+K+GRSPIY TVTA DGT+KLLLKLEDN LIETVGIPV++EKG  RLTACVSSQVGCPLRCSFCATGKGG+SRNLQRHEIIEQVLAIED+FKHRVTNVVFMGMGEPMLNLKSVLDAH+CLNKD++IGQRMITISTVGVPNTIKKLA+HKLQSTLAVSLHA NQ LRE IVPSAK+YPL+AIM DCRDYF ET+RRVSFEYALLAGVNDSVE A ELAELL EWG+ YHVNLIP+NPIEGSEY+RP KK V AFA ALESRKIT S+RQTRGL+A+AACGQLRN FQKSPL+ E+D +ES  +++ AV+C
Sbjct:   50 PASSKPARAPHVDSQVLLGMSEPELQQLAIKLGQEGYRGKQLHHLIYKRKAKQVEDFSNLPQTFRKELVESGYKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQEEKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDIEIGQRMITISTVGVPNTIKKLAAHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAIMSDCRDYFQETNRRVSFEYALLAGVNDSVENALELAELLREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFAAALESRKITASVRQTRGLEANAACGQLRNKFQKSPLLAETDGQESKPEAEEAVSC 430
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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: G7KBR0_MEDTR (23S rRNA m2A2503 methyltransferase OS=Medicago truncatula GN=MTR_5g079860 PE=3 SV=2)

HSP 1 Score: 630.558 bits (1625), Expect = 0.000e+0
Identity = 307/421 (72.92%), Postives = 357/421 (84.80%), Query Frame = -3 
Query:  339 ISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSA-RAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDRE-ESQ---SDVAV 1586
            +S+L H  + PLAR  R              +P     +S  TSS+ R      +VLLG+SE +LQ+LA++FGQQ +RGKQL+HLIYKRK K+IQ+F+ +PQAFRN+L +AGWK+GRSPI++TV A DGTVKLLLKLEDNRLIETVGIPVEDEKGS+RLTACVSSQVGCPL+CSFCATGKGG+SRNL+ HEI+EQVLAIE++FK RVTNVVFMGMGEPMLNLK+VL+AH+CLNKD+QIGQRM+TISTVGVPNTIKKLA+HKLQSTLAVSLHA NQKLRE IVPSAKSYPLDA+MKDC++YF ETSRRVSFEYALLAG+NDSV+ A ELA+LLHE+G GYHVNLIPFNPIEGSE+RRP +K V AF  ALES KIT S+RQTRGLDA+AACGQLRNNFQK+PL+ ESD   ESQ    D+AV
Sbjct:    2 MSLLHHYSM-PLARVVR-------------PSPRTRAAISFATSSSPRTTIPQSQVLLGLSETELQKLALDFGQQGFRGKQLYHLIYKRKVKDIQEFTQVPQAFRNELEEAGWKVGRSPIFNTVVATDGTVKLLLKLEDNRLIETVGIPVEDEKGSVRLTACVSSQVGCPLKCSFCATGKGGFSRNLRSHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLEAHRCLNKDIQIGQRMMTISTVGVPNTIKKLATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMKDCKEYFHETSRRVSFEYALLAGINDSVDNAVELAKLLHEYGSGYHVNLIPFNPIEGSEFRRPYRKAVQAFVNALESSKITTSVRQTRGLDANAACGQLRNNFQKTPLVTESDNNLESQLPNMDLAV 408
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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: R0HSZ3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023268mg PE=3 SV=1)

HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0
Identity = 321/416 (77.16%), Postives = 358/416 (86.06%), Query Frame = -3 
Query:  333 VCVVPLARAT--RHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPV-EDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDV-AVAC 1568
            V  VP++R    RH   TV A+ASTTV PS     + P   AR PH+D +VLLGMSE +LQQLA+  GQ+ YRGKQLHHLIYKRKA +++DF++LPQ FR +L+  G+K+GRSPIY TVTA DGT+KLLLKLEDN LIETVGIPV +DEKG  RLTACVSSQVGCPLRCSFCATGKGG+SRNLQRHEIIEQVLAIED+FKHRVTNVVFMGMGEPMLNLKSVLDAH+C+NKD++IGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQ LRE IVPSAK+YPL+AIMKDCRDYF ET+RRVSFEYALLAGVND VE A ELAELL EWG+ YHVNLIP+NPIEGSEY+RP KK V AFA ALESRKIT S+RQTRGLDA AACGQLRN FQKSPL+ E+D +ESQ D  AV+C
Sbjct:   16 VFSVPISRMVVRRHSFATVFATASTTVVPSPKPASAKP---ARTPHIDSQVLLGMSEPELQQLAINLGQEGYRGKQLHHLIYKRKAAKVEDFNNLPQTFRKELVDGGYKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCMNKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALLAGVNDKVEHAVELAELLREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFAAALESRKITASVRQTRGLDAGAACGQLRNKFQKSPLLAETDSQESQPDAEAVSC 428
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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: V4P078_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016689mg PE=3 SV=1)

HSP 1 Score: 629.787 bits (1623), Expect = 0.000e+0
Identity = 306/375 (81.60%), Postives = 340/375 (90.67%), Query Frame = -3 
Query:  333 ARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPV-EDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDV-AVAC 1451
            AR PHVD +VLLGMSE +LQQLA++ GQ+ YRGKQLHHLIYKRK KE++DFS+LP+ FRN+L++ G+K+GRSPIY TVTA DGT+KLLLKLED+ L+ETVGIPV E+EKG  RLTACVSSQVGCPLRCSFCATGKGG+SRNLQRHEIIEQVLAIED+FKHRVTNVVFMGMGEPMLNLKSVLDAH+C+NKD++IGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQ LRE IVPSAK+YPL+AIMKDCRDYF ET+RRVSFEYALLAGVNDSVE A ELAELL EWG+ YHVNLIP+NPIEGSEY+RP KK V AFA ALESRKIT S+RQTRGLDASAACGQLRN FQKSPL+  +D +ESQ D  AV C
Sbjct:   50 ARTPHVDSQVLLGMSEPELQQLAIKLGQEGYRGKQLHHLIYKRKVKEVEDFSNLPKTFRNELVEGGFKVGRSPIYQTVTATDGTIKLLLKLEDSLLVETVGIPVQEEEKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCMNKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALLAGVNDSVEHAVELAELLREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNKFQKSPLLAVTDGQESQPDAEAVPC 424
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A087H401_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G180200 PE=3 SV=1)

HSP 1 Score: 628.246 bits (1619), Expect = 0.000e+0
Identity = 314/413 (76.03%), Postives = 354/413 (85.71%), Query Frame = -3 
Query:  354 ISMLQH-VCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPV-EDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQ 1586
            ++MLQ+ V  VP++R    R    + +A+ T  PS       P    R PHVD +VLLGMSE +LQQLA+  GQ+ YRGKQLHHLIYKRK KE+++FS+LPQ FR +L+  G+K+GRSPIY TVTA DGT+KLLLKLEDN LIETVGIPV E+EKG  RLTACVSSQVGCPLRCSFCATGKGG+SRNLQRHEIIEQVLAIED+FKHRVTNVVFMGMGEPMLNLKSV+DAH+CLNKD++IGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQ LRE IVPSAK+YPL+AIMKDCRDYF ET+RRVSFEYALLAGVNDSVE A ELAELL EWG+ YHVNLIP+NPIEGSEY+RP +K V AFA ALESRKIT S+RQTRGLDASAACGQLRN FQKSPL++E+D +E Q
Sbjct:    9 MAMLQNLVFSVPISRMVLRRHSLATVTAAVTAVPSPKPASVKP---VRTPHVDSQVLLGMSEPELQQLAINLGQEGYRGKQLHHLIYKRKVKEVEEFSNLPQTFRKELVDGGFKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQEEEKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVIDAHRCLNKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALLAGVNDSVEHAVELAELLREWGKTYHVNLIPYNPIEGSEYKRPYRKAVQAFAAALESRKITASVRQTRGLDASAACGQLRNKFQKSPLLVETDGQEPQ 418
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_ACAM1 (Probable dual-specificity RNA methyltransferase RlmN OS=Acaryochloris marina (strain MBIC 11017) GN=rlmN PE=3 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 3.047e-126
Identity = 189/340 (55.59%), Postives = 243/340 (71.47%), Query Frame = -3 
Query:  408 LLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1421
            LLG S+  L   A  + Q +YRG+Q+H  IY++    + D + LP+ +R ++  A   +GRS I+H   A DGTVK LLKL D ++IETVGIP +      RLT CVSSQVGCP+ C FCATGKG Y RNL  HEI++QVL +++ F+ RV NVVFMGMGEP+LNL+ VL A + LN+DV IGQR +T+STVG+P  I KLA H+LQ TLAVSLHASNQ++R  +VPSAK YPL+ ++KDCR Y  +T RRV+FEY +L+GVND  E A ELA  L    RG+  HVNLIP+NPI   +Y+RP +K +  F  +L+S+ IT SIR++RGLD  AACGQLR
Sbjct:   13 LLGASKAQLTHWAQTYQQPAYRGQQVHQWIYQKGVHSLSDITVLPKQWRTEI--ADIPVGRSQIHHRSAAQDGTVKYLLKLADGQIIETVGIPTQK-----RLTVCVSSQVGCPMGCDFCATGKGEYQRNLACHEIVDQVLTVQEDFQQRVGNVVFMGMGEPLLNLEQVLAAVRSLNQDVGIGQRSLTVSTVGIPKQILKLAQHQLQITLAVSLHASNQRIRTQLVPSAKHYPLEKLLKDCRAYVTQTGRRVTFEYIVLSGVNDQTEHALELAHHL----RGFQSHVNLIPYNPISEVDYQRPTQKQLQQFLNSLQSQHITASIRRSRGLDKDAACGQLR 341
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Probable dual-specificity RNA methyltransferase RlmN OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 5.693e-124
Identity = 189/342 (55.26%), Postives = 239/342 (69.88%), Query Frame = -3 
Query:  405 VLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRN 1424
            VLLG S  +L+      GQ  YRG+QLH  +Y++ A+ +Q+ +  P+ +R  L  A  +IGRS I +   A DGTVKLLL L D   IETVGIP  D     RLT CVSSQVGCP+ C FCATGKGGY RNL  HEI++QVL I+     RV++VVFMGMGEP+LNL +VL A  CLN+D+ IGQR ITISTVG+P  I++LA H+LQ+TLAVSLHA NQ LRE ++PSAK YPL  ++ DCR Y  +T RR++FEY +LAGVND  + A ELA+LL    RG+  HVNLIP+NPI  + Y+RP  + +  F   L++  +T SIR++RGLD  AACGQLR 
Sbjct:    2 VLLGRSAAELKAWVEAQGQPGYRGQQLHQWLYRKGARSLQEITVFPKQWRAAL--ADVEIGRSEIRYRHDAQDGTVKLLLALADGETIETVGIPSSD-----RLTVCVSSQVGCPMACDFCATGKGGYRRNLACHEILDQVLTIQSEMGRRVSHVVFMGMGEPLLNLPAVLQAITCLNRDIGIGQRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPNQALREQLIPSAKHYPLSQLIADCRAYVQQTGRRITFEYTVLAGVNDRPQHAEELAQLL----RGFQSHVNLIPYNPIAEAAYQRPTDQHLRQFLSQLQALGVTASIRRSRGLDRQAACGQLRQ 332
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_TRIEI (Probable dual-specificity RNA methyltransferase RlmN OS=Trichodesmium erythraeum (strain IMS101) GN=rlmN PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.158e-123
Identity = 190/353 (53.82%), Postives = 251/353 (71.10%), Query Frame = -3 
Query:  408 TSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1460
            T S + P   P  LLG+S   L +   + GQ +YRGKQL+  IY++ AK + D +   + +R ++  + + IGRS I+H   A D TVK LLKL D  +IETVGIP        RLT CVSSQVGCP+ C FCATGKGG+SRNL+ HEII+QVL +++ F+ RV+++VFMGMGEP+LN K+VL A + LN+D+ IGQR+ITIST G+ + I++LA HKLQ TLAVSLHASNQ+LRE ++PSAK YPL  ++ +CR+Y   T RR+SFEY LLA  ND  + ARELA+ +    RG+  HVNLIP+NPI   +Y+RP ++ +  FA AL  + I VSIR +RGL+A+AACGQLR
Sbjct:    2 TQSFKTPTQTP--LLGLSLAKLTEWVQQQGQPAYRGKQLYQWIYQKGAKSLADITVFSKQWREEI--SNFPIGRSVIHHRSVAPDATVKYLLKLSDGNIIETVGIPTYK-----RLTVCVSSQVGCPMACDFCATGKGGFSRNLEAHEIIDQVLTVQEDFERRVSHIVFMGMGEPLLNTKNVLAAVRSLNQDLGIGQRLITISTSGIRDRIRQLAQHKLQVTLAVSLHASNQRLREHLIPSAKFYPLADLISECREYVKITKRRISFEYILLASFNDLPDHARELAKNM----RGFQCHVNLIPYNPISEVDYQRPTQEMIKTFANALAEQNIAVSIRYSRGLEANAACGQLR 341
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJA (Probable dual-specificity RNA methyltransferase RlmN OS=Synechococcus sp. (strain JA-3-3Ab) GN=rlmN PE=3 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 5.655e-123
Identity = 187/350 (53.43%), Postives = 247/350 (70.57%), Query Frame = -3 
Query:  390 PRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLH---EWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKS 1430
            P  LLG S   L+  AVE GQ +YRG+QLH  +Y +  + +Q+ +  P+A+R  L +  + +GRS +   + + DGTVK LL+L D  LIETVGIP      + RLT CVSSQVGCP+ C+FCATGK GY RNL+ HEI++QVL +++ F  RV++VVFMGMGEP+LN  +V+ A + LN+D+ IGQR IT+STVGVP  I  LA   LQ TLAVSLHA NQ+LR+ ++PSA  YPLDA+++DCRDY   + RR+SFEY LLAGVND    AR+LA LL    + G   HVNLIP+NPI  ++Y+RP+   V+ F   LE   + VS+RQTRGLD++AACGQLR +F ++
Sbjct:    5 PLPLLGQSLAALKDWAVEQGQPAYRGQQLHTWLYHKGIRSLQEVTVFPKAWREALQE--YPVGRSQVVQRIESRDGTVKFLLQLADGELIETVGIPT-----ARRLTVCVSSQVGCPMACNFCATGKMGYRRNLKLHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIPWLAQQDLQITLAVSLHAPNQELRQQLIPSAAHYPLDALIQDCRDYMLCSGRRISFEYTLLAGVNDLPIHARQLAHLLRQASQAGARLHVNLIPYNPIAEADYQRPHPTRVAEFVRLLEEHHVQVSVRQTRGLDSNAACGQLRGSFLRA 347
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_CYAA5 (Probable dual-specificity RNA methyltransferase RlmN OS=Cyanothece sp. (strain ATCC 51142) GN=rlmN PE=3 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 7.280e-122
Identity = 187/338 (55.33%), Postives = 238/338 (70.41%), Query Frame = -3 
Query:  408 LLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1421
            LLG S   L     + GQ +YRGKQLH  +Y++  + + + S  P+A+R +L    + IGRS I H   A D T K LL L D  +IETVGIP      S RLT CVSSQVGCP+ C FCATGKGGY+RNL   EI++QVL +++ F+ RV++VVFMGMGEP+LNLK V+ A + LN+DV IGQR +TISTVGVP  I +LA H+LQ T AVSLHA+NQ LRE ++PSAKSYPL  ++ DCR Y   T RRV+FEY LL GVND  EQ  +LA+ L   G   HVNLIP+NPIE ++Y+RP+ ++++ F   LE  KI VS+R +RGL+A+AACGQLR
Sbjct:    8 LLGKSVGQLTDWVKQQGQPAYRGKQLHQWLYQKGVRSLTEISVFPKAWREEL--KDYPIGRSNIVHCTIAPDQTRKYLLSLGDGLIIETVGIPT-----SKRLTVCVSSQVGCPMNCDFCATGKGGYTRNLTCAEIVDQVLTVQEDFQRRVSHVVFMGMGEPLLNLKEVIKAVKILNQDVGIGQRSLTISTVGVPKKILELAHHQLQVTFAVSLHAANQTLREQLIPSAKSYPLPKLLADCRKYVEITGRRVTFEYILLGGVNDLPEQGIQLAKCLT--GFQSHVNLIPYNPIEEADYQRPDGESINRFKSILEEHKIAVSVRYSRGLEANAACGQLR 336
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJB (Probable dual-specificity RNA methyltransferase RlmN OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rlmN PE=3 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 9.107e-122
Identity = 186/350 (53.14%), Postives = 240/350 (68.57%), Query Frame = -3 
Query:  390 PRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRG---YHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKS 1430
            P  LLG S   L+  AV  GQ +YRG+QLH  IY++  + ++  +  P+A+R  +    + +GRS I     A DGTVK LL L D +LIETVGIP      + RLT CVSSQVGCP+ C FCATGK GY RNL+ HEI++QVL +++ F  RV++VVFMGMGEP+LN  +V+ A + LN+D+ IGQR IT+STVGVP  I  LA   LQ TLAVSLHA NQ LR+ ++PSA  YPLD +++DCRDY   T RRVSFEY LL+GVND    AR+LA+LL +  R     HVNLIP+NPI  ++Y+RP+   V  F   LE  ++  ++RQTRGLD +AACGQLR +F +S
Sbjct:    5 PIPLLGQSLSALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAV--QSYPVGRSRIVQRTEARDGTVKFLLGLADGQLIETVGIPT-----AKRLTVCVSSQVGCPMACDFCATGKMGYRRNLELHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSASHYPLDTLIQDCRDYMLRTGRRVSFEYTLLSGVNDLPIHARQLAQLLQQASRSGVQLHVNLIPYNPISEADYQRPHPTRVREFVRQLEQHQVRATVRQTRGLDGNAACGQLRGSFLRS 347
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_CYAP8 (Probable dual-specificity RNA methyltransferase RlmN OS=Cyanothece sp. (strain PCC 8801) GN=rlmN PE=3 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.129e-121
Identity = 186/343 (54.23%), Postives = 240/343 (69.97%), Query Frame = -3 
Query:  408 VDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1436
            V    LLG S  +L Q   + GQ +YRGKQLH  +Y++ A+ + + S  P+ +R  LI   + IGRS I +   A D T K LL L D  +IETVGIP      + RLT CVSSQVGCP+ C FCATGKGGY R+L+ HEI++QVL +++ F+ RV++VVFMGMGEP+LNL+ V+ + + LN+D+ IGQR +TISTVG+P  I +LA H LQ TLAVSLHASNQ LRE ++PSA+ Y L  ++ DCR+Y   T RR+SFEY LL GVND  EQA ELA LL   G   HVNLIP+NPI+ ++Y+RPN+  +  F   LE  KI VS+R +RGL+A+AACGQLR
Sbjct:    3 VTEETLLGKSLDELTQWVEKQGQPTYRGKQLHQWLYEKGARSLDEISVFPKTWREKLIN--YPIGRSTIDYRTVAPDATRKYLLCLGDGLIIETVGIPT-----AKRLTVCVSSQVGCPMACDFCATGKGGYQRHLRAHEIVDQVLTVQEDFQRRVSHVVFMGMGEPLLNLEEVVKSVKILNQDIGIGQRSLTISTVGLPQKIIQLAHHHLQVTLAVSLHASNQPLRETLIPSAQHYTLKNLLADCREYVNITGRRISFEYVLLGGVNDLPEQAIELANLLK--GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLEANAACGQLR 336
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_NOSP7 (Probable dual-specificity RNA methyltransferase RlmN OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rlmN PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 8.742e-121
Identity = 180/343 (52.48%), Postives = 244/343 (71.14%), Query Frame = -3 
Query:  408 LLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGS---MRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1421
            LLG S  +L     + GQ +YRGKQLH  IY +  + + D S   + +R ++  A   IGRS +++   A DGTVK LL+L D ++IETVGIP   E+G     RLT CVS+QVGCP+ C FCATGKGGY RNL RHEII+QVL +++ F+ RV+NVVFMG+GEP+LN ++VL A + LN+D+ IGQR +T+STVG+ + I++ A + LQ TLAVSLHA NQ LRE ++PSA++YPL+ ++ +CR+Y   T RRV+FEY LLAGVND  E A EL++ +    RG+  HVNLIP+NPI+  +Y+RPN+  + AF   L+ +   VS+R +RGL+A AACGQLR
Sbjct:   24 LLGASVAELSAWVQQQGQPAYRGKQLHEWIYDKGVRSLADISVFSKQWRAEV--AEIPIGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQVGCPMACDFCATGKGGYKRNLARHEIIDQVLTVQEDFQQRVSNVVFMGLGEPLLNTENVLAALKSLNQDIGIGQRSLTVSTVGIRDRIRQFAQNNLQITLAVSLHAPNQALREKLIPSARAYPLEELLAECREYVEITGRRVTFEYVLLAGVNDLPEHALELSKCM----RGFQSHVNLIPYNPIQEVDYKRPNRDRIEAFVNVLKQQNTAVSVRYSRGLEADAACGQLR 360
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_MICAN (Probable dual-specificity RNA methyltransferase RlmN OS=Microcystis aeruginosa (strain NIES-843) GN=rlmN PE=3 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.565e-120
Identity = 182/340 (53.53%), Postives = 240/340 (70.59%), Query Frame = -3 
Query:  402 LLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNN 1421
            LL  S  +L     + GQ +YRGKQLH  +Y++    + D S  PQ +R+ +  A + IGRS I++   A D T K LLKL D  +IE VGIP E      RLT CVSSQVGCP+ C FCATGKGG++RNL+ HEI++QVL +++ F+ RV++VVFMGMGEP+LN+  V+ A  CLNKDV IGQR +TISTVG+P+ IK+LA H LQ T AVSLHASNQ++R  ++PSA  Y L  +++DC++Y   T RRV+FEY LLAGVND  E ARELA+L+   G   HVNLIP+NPI+  +Y+RP++K + AF   LE  K+ V++R +RGL   AACGQLR++
Sbjct:    3 LLAKSLEELTDWVKDQGQPAYRGKQLHQWLYEKGVHSLADISVFPQEWRSKM--ADYPIGRSLIHYRSVAPDRTRKYLLKLADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHCLNKDVGIGQRCLTISTVGLPHKIKQLAEHNLQITFAVSLHASNQQVRAKLIPSADHYLLSNLIQDCQEYVQITGRRVTFEYILLAGVNDLPEHARELAKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLATDAACGQLRSS 333
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_ANAVT (Probable dual-specificity RNA methyltransferase RlmN OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rlmN PE=3 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 1.630e-119
Identity = 186/360 (51.67%), Postives = 250/360 (69.44%), Query Frame = -3 
Query:  405 LTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRN 1478
            +T  +P+S  + P +    LLG S  +L     + GQ +YRGKQLH  IY +  + + D S   + +R  +  A   IGRS I+H   A+DGTVK LL+L D  ++ETVGIP +      RLT CVS+QVGCP+ C FCATGKGGY RNL+RHEI++QVL +++ F+ RV++VVFMGMGEP+LN ++VL A + LN+DV IGQR +T+STVG+ + I +LA H LQ TLAVSLHA NQ LRE ++PSA+SY ++ ++ +CR+Y A T RR+SFEY LLAGVND  E A EL++ L    RG+  HVNLIP+NPI   +Y+RP+   + AF   L+ + I VS+R +RGL+A AACGQLR 
Sbjct:    6 VTQLTPSSQPQQPCLP---LLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAV--ADVPIGRSTIHHRSVASDGTVKYLLQLSDGEIVETVGIPTDK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAALRSLNQDVGIGQRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLLAECREYVAITGRRISFEYILLAGVNDLPEHALELSKHL----RGFQNHVNLIPYNPISEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRT 351
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059A8Y2_EUCGR0.000e+084.20Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A0A0KLM9_CUCSA0.000e+073.85Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A078G4W0_BRANA0.000e+076.07BnaC04g05780D protein OS=Brassica napus GN=BnaC04g... [more]
A0A0D3BQH6_BRAOL0.000e+079.90Uncharacterized protein OS=Brassica oleracea var. ... [more]
M4CLD9_BRARP0.000e+080.58Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A078CCM6_BRANA0.000e+080.58BnaA05g05920D protein OS=Brassica napus GN=BnaA05g... [more]
G7KBR0_MEDTR0.000e+072.9223S rRNA m2A2503 methyltransferase OS=Medicago tru... [more]
R0HSZ3_9BRAS0.000e+077.16Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
V4P078_EUTSA0.000e+081.60Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A087H401_ARAAL0.000e+076.03Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RLMN_ACAM13.047e-12655.59Probable dual-specificity RNA methyltransferase Rl... [more]
RLMN_THEEB5.693e-12455.26Probable dual-specificity RNA methyltransferase Rl... [more]
RLMN_TRIEI1.158e-12353.82Probable dual-specificity RNA methyltransferase Rl... [more]
RLMN_SYNJA5.655e-12353.43Probable dual-specificity RNA methyltransferase Rl... [more]
RLMN_CYAA57.280e-12255.33Probable dual-specificity RNA methyltransferase Rl... [more]
RLMN_SYNJB9.107e-12253.14Probable dual-specificity RNA methyltransferase Rl... [more]
RLMN_CYAP81.129e-12154.23Probable dual-specificity RNA methyltransferase Rl... [more]
RLMN_NOSP78.742e-12152.48Probable dual-specificity RNA methyltransferase Rl... [more]
RLMN_MICAN1.565e-12053.53Probable dual-specificity RNA methyltransferase Rl... [more]
RLMN_ANAVT1.630e-11951.67Probable dual-specificity RNA methyltransferase Rl... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006638Elongator protein 3/MiaB/NifBSMARTSM00729MiaBcoord: 173..382
e-value: 0.0031
score: 11.2
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 174..387
e-value: 5.5E-16
score: 58.1
IPR004383Ribosomal RNA large subunit methyltransferase RlmN/CfrTIGRFAMTIGR00048TIGR00048coord: 71..410
e-value: 1.7E-118
score: 393.6
IPR004383Ribosomal RNA large subunit methyltransferase RlmN/CfrPANTHERPTHR3054423S RRNA METHYLTRANSFERASEcoord: 6..433
IPR007197Radical SAMPFAMPF04055Radical_SAMcoord: 178..341
e-value: 3.7E-16
score: 59.8
NoneNo IPR availablePANTHERPTHR30544:SF6RADICAL SAM DOMAIN-CONTAINING PROTEINcoord: 6..433
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..433
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..42
score: 0.52
NoneNo IPR availableSUPERFAMILY102114Radical SAM enzymescoord: 172..369
IPR027492Dual-specificity RNA methyltransferase RlmNHAMAPMF_01849RNA_methyltr_RlmNcoord: 68..413
score: 61.949

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008835 ID=g.arboreum_cottongen_reftransV1_0008835; Name=g.arboreum_cottongen_reftransV1_0008835; organism=Gossypium arboreum; type=contig; length=1672bp
AAAATTTAAAACTATTCATTATTTTGCGTGTGATTATTACACATAGAGAG
ATGGTATAGGACCCTCCAGTCTACTTGAATTAACCTTTGCCATCAACCGC
GTTGAAGAGTTAATTGTGTACACATAGAACCAGGGTTGCGCATGGTTTGG
TGAAGGGTATTAACACCTGAATCACGAATCATCCATGCCAAGATTGGACT
GTGAATTTACTCATGACTCATGAACCTTTAACGCCGATTTTAAGATCCCA
AACTGTTGATCCCCCTCCCCCCTCCATATAACAACATTGACGGCTAAAAT
GCACCAGCCCCAAATCATGGCATCAATATTCAACATGCAACCGCAACATC
TGATTGCGATTCCTCGCGGTCAGATTCAATAATCAGAGGACTTTTCTGGA
AGTTATTTCTTAGCTGACCGCAGGCAGCGCTTGCATCCAGACCCCTTGTC
TGACGAATACTAACAGTTATTTTACGAGACTCCAGTGCACCTGCAAATGC
TGACACTGTTTTTTTGTTCGGCCGTCGATACTCAGAGCCCTCTATCGGAT
TGAAAGGTATCAGATTGACATGATAACCACGTCCCCATTCATGCAGTAGC
TCAGCTAGTTCTCGTGCTTGTTCTACTGAATCATTCACCCCAGCTAGCAG
TGCATATTCAAAGGAGACTCGCCGACTGGTTTCAGCGAAGTAATCCCGGC
AGTCCTTCATGATTGCATCAAGGGGGTAAGATTTTGCACTGGGCACAATC
ATTTCCCTGAGTTTCTGGTTTGAAGCATGTAAGCTGACGGCCAATGTTGA
TTGAAGCTTGTGAGAAGCTAGTTTTTTTATGGTGTTTGGAACTCCCACAG
TGGAAATTGTAATCATTCTTTGCCCTATTTGAACATCCTTATTCAAGCAT
TGATGAGCATCAAGTACTGACTTCAAATTCAACATGGGCTCCCCCATTCC
CATGAACACTACATTTGTCACTCTGTGCTTGAAAATATCCTCGATAGCCA
ATACCTGCTCAATAATTTCATGCCTTTGAAGATTCCTAGAATACCCTCCC
TTTCCAGTGGCACAAAATGAACAACGCAAGGGGCAGCCTACCTGTGATGA
TACGCATGCAGTAAGACGCATCGAACCCTTTTCATCTTCAACTGGAATGC
CAACTGTTTCGATCAATCTGTTATCCTCCAACTTTAACAATAACTTAACG
GTGCCATCAGCAGCAGTAACGGTGTGGTAAATTGGAGACCTTCCTATTTT
CCATCCAGCTTTTATAAGATCATTTCTAAATGCTTGAGGCAAGTGACTGA
AATCCTGAATTTCTTTTGCCTTTCTCTTGTAAATTAAATGGTGTAGTTGC
TTCCCTCTGTAACTTTGCTGGCCGAACTCGACGGCGAGTTGTTGAAGGTC
ATGTTCAGACATGCCGAGGAGGACGCGAGGGTCCACGTGAGGGGCACGAG
CGGATGAGGTAGGGGAGGAGACGGTGAGATTGCGCGACGGCGTGACGGTG
GTGGAGGCGGAAGCGGAGACGGTGAAGGAACGGTGACGGGTGGCACGTGC
GAGAGGAACGACGCAAACGTGCTGAAGCATGGAAATTTTGGTTGCAAACA
TGGCGTTCATCGTCTTTGAATTGAAGAGCAATAACCCTCTCTGTATAATA
TCAACAGTTTCAGCCTCATGAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006638Elp3/MiaB/NifB
IPR013785Aldolase_TIM
IPR004383rRNA_lsu_MTrfase_RlmN/Cfr
IPR007197rSAM
IPR027492RNA_MTrfase_RlmN
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0008173RNA methyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0030488tRNA methylation
GO:0070475rRNA base methylation