g.arboreum_cottongen_reftransV1_0008835, g.arboreum_cottongen_reftransV1_0008835 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A0B0P4H5_GOSAR (Ribosomal RNA large subunit methyltransferase N OS=Gossypium arboreum GN=F383_01665 PE=3 SV=1) HSP 1 Score: 861.677 bits (2225), Expect = 0.000e+0 Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = -3 Query: 333 MNAMFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1610 MNAMFATKISMLQHVCVVPLARATRHRSFTVSASASTTVTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC Sbjct: 1 MNAMFATKISMLQHVCVVPLARATRHRSFTVSASASTTVTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 426
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A0D2TYF5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G319500 PE=3 SV=1) HSP 1 Score: 848.195 bits (2190), Expect = 0.000e+0 Identity = 417/426 (97.89%), Postives = 422/426 (99.06%), Query Frame = -3 Query: 333 MNAMFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1610 M AMFATKISMLQHVCVVPLARATRHRSFT+SASASTT TPSRNLTVSSPTSS+RAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLI+AGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAH+CLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDS EQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPL+IESDREESQSDVAVAC Sbjct: 1 MKAMFATKISMLQHVCVVPLARATRHRSFTISASASTTGTPSRNLTVSSPTSSSRAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIEAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSAEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLLIESDREESQSDVAVAC 426
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A061FM31_THECC (Radical SAM superfamily protein OS=Theobroma cacao GN=TCM_042752 PE=3 SV=1) HSP 1 Score: 761.911 bits (1966), Expect = 0.000e+0 Identity = 384/455 (84.40%), Postives = 406/455 (89.23%), Query Frame = -3 Query: 333 IQRGLLLF------NSKTMNAMFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSA--RAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQV---------LAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1646 +++G LF +S +AM TK+SMLQHVC VPL RA R R FTVS +A+ PSRNLTVS P+SS+ R PHVDPRVLLGMSE DLQQLAV+FGQQ YRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDL++AGW IGRSPIYHTVTAADGTVKLL+KLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNL+RHEIIEQV LAIEDIFK RVTNVVFMGMGEPMLNLKSVLDAH+CLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQ+LREMIVPSAKSYPLDAIMKDCRDYF ETSRRVSFEYALLAGVNDSVEQA ELAELLHEWGR YHVNLIPFNPIEGSEYRRP KK V AFAGALESRK+TVSIRQTRGLDASAACGQLRNNFQK+PL+ ESD E+SQS+VAVAC Sbjct: 3 LKQGFRLFGHQRTKSSGEASAMITTKMSMLQHVCSVPLTRAIRPRPFTVSGAATAVT-PSRNLTVSFPSSSSSLRTPHVDPRVLLGMSEQDLQQLAVDFGQQRYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLMEAGWTIGRSPIYHTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLRRHEIIEQVYDPRLCEQVLAIEDIFKRRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQELREMIVPSAKSYPLDAIMKDCRDYFVETSRRVSFEYALLAGVNDSVEQAVELAELLHEWGRNYHVNLIPFNPIEGSEYRRPYKKAVLAFAGALESRKVTVSIRQTRGLDASAACGQLRNNFQKNPLLTESDSEQSQSNVAVAC 456
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A067L960_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01452 PE=3 SV=1) HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0 Identity = 342/419 (81.62%), Postives = 365/419 (87.11%), Query Frame = -3 Query: 333 ISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNL-TVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1586 ++MLQHVC VPLARA R S SR L T SS S R HVDPRVLLGMSE +LQQLA +FGQQSYRGKQLHHLIY+RK KEIQDFS LPQAFR++L +AGWKIGRSPIY TVTAADGTVKLL+KLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNL+RHEI+EQVLAIED+F HRVTNVVFMGMGEPMLNLKSVL+AH+CLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLA+SLHA NQKLRE IVPSAK+YPLDAIMKDCR YF ETSRRVSFEYALLAGVNDS E A ELAELL +WGRG HVNLIPFNPIEGS+Y+RP KK V AF ALESRKITVSIRQTRGLDASAACGQLRN FQKSPL+ +SD Q+D+AV C Sbjct: 1 MAMLQHVCSVPLARAVRQPHSFTIVS-------SRKLRTTSSAVSPPRTSHVDPRVLLGMSEPELQQLANDFGQQSYRGKQLHHLIYERKVKEIQDFSQLPQAFRHELEEAGWKIGRSPIYRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLKRHEIVEQVLAIEDVFNHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLALSLHAPNQKLRETIVPSAKAYPLDAIMKDCRGYFLETSRRVSFEYALLAGVNDSTEHAIELAELLQKWGRGSHVNLIPFNPIEGSDYQRPQKKAVRAFTAALESRKITVSIRQTRGLDASAACGQLRNEFQKSPLLADSDSLPLQTDIAVLC 412
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: B9T4I0_RICCO (Catalytic, putative OS=Ricinus communis GN=RCOM_0000920 PE=3 SV=1) HSP 1 Score: 688.723 bits (1776), Expect = 0.000e+0 Identity = 333/427 (77.99%), Postives = 379/427 (88.76%), Query Frame = -3 Query: 333 MFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAP----HVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1601 M T ++ML HVC +P+ARA HR +++A + SR+L+ ++ ++A +P VDP VLLGMSE +LQQLA +FGQQSYRGKQLHHLIY+RK KEIQDFS LPQAFRN+L +AGW++GRSPIY TVTAADGTVKLL+KLEDNRLIETVGIP++DEKG +RLTAC+SSQVGCPLRCSFCATGKGGYSRNL+RHEI+EQVLAIE+IFK+RVTNVVFMGMGEPMLNLKSVL+AH+CLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLA+SLHA NQKLRE IVPSAKSYPLDAIMKDCRDYF ETSRRVSFEYALLAGVND E A+ELAELLHEWGRG HVNLIPFNPIEGS+Y+RP+KK V AFA ALESRKITVS+RQTRG+DASAACGQLRN FQKSPL+ +SD +S+ ++AVAC Sbjct: 1 MITTSMAMLSHVCSLPIARAI-HRPLSLTAIS------SRSLSTATSATAAASPPRGSQVDPHVLLGMSEPELQQLAADFGQQSYRGKQLHHLIYQRKVKEIQDFSQLPQAFRNELQEAGWRVGRSPIYRTVTAADGTVKLLIKLEDNRLIETVGIPIQDEKGPVRLTACISSQVGCPLRCSFCATGKGGYSRNLKRHEIVEQVLAIEEIFKNRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLALSLHAPNQKLRETIVPSAKSYPLDAIMKDCRDYFLETSRRVSFEYALLAGVNDRAEHAKELAELLHEWGRGSHVNLIPFNPIEGSDYQRPSKKAVQAFAAALESRKITVSVRQTRGMDASAACGQLRNEFQKSPLLADSDSLQSEPEIAVAC 420
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: B9HMI5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05660g PE=3 SV=2) HSP 1 Score: 678.322 bits (1749), Expect = 0.000e+0 Identity = 340/452 (75.22%), Postives = 381/452 (84.29%), Query Frame = -3 Query: 333 KTMNAMFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQ-----------------------VLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQ-SDVAVAC 1616 + + M AT +S+LQHVC VP+ARA R RS T+ +S S + T SS ++++RA VDP VLLGMSE +LQQLA + GQQSYRGKQLHHLIY+RK KEIQDFS LP FRNDL +AGWK+GRSPI+ TVTAADGTVKLL++LEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGG+SRNLQRHEI+EQ VLA+E+IFKHRVTNVVFMGMGEPMLNLKSVL+AH+CLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLA+SLHA NQKLRE IVPSAKSYPLDAIMKDC++YF ETSRRVSFEYALLAGVND VE A+ELAELLH+WGRG+HVNLIPFNPI+GS+Y+RP+KK + AFA LESRK+TVS+RQTRGLDASAACGQLRN FQKSPL+I SD ESQ +VAVAC Sbjct: 64 RQLTTMIATSMSLLQHVCSVPIARAMRPRSVTIISSR------SLSTTTSSSSTTSRASQVDPHVLLGMSEPELQQLATDLGQQSYRGKQLHHLIYQRKVKEIQDFSQLPLVFRNDLQEAGWKVGRSPIFQTVTAADGTVKLLIRLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQHRLGSSGTTSTCSKLYLHVLYAQVLAVEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLALSLHAPNQKLRETIVPSAKSYPLDAIMKDCKEYFLETSRRVSFEYALLAGVNDRVEHAKELAELLHQWGRGHHVNLIPFNPIQGSDYKRPHKKAIQAFAAVLESRKVTVSVRQTRGLDASAACGQLRNEFQKSPLVINSDSLESQPENVAVAC 509
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: M5X040_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006433mg PE=3 SV=1) HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0 Identity = 325/423 (76.83%), Postives = 363/423 (85.82%), Query Frame = -3 Query: 333 MFATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1601 M AT S++Q VC VPLARA R R+ V ++ +S+ + ++A D RVLLG+SE +LQQLA++ QQSYRGKQLHHLIYKRK K+IQDFS +P AFRN+L +AGWK+GRSPIY +VTAADGTVKLL+KLEDNRLIETVGIPV+DEKG MRLTACVSSQVGCPLRCSFCATGKGG+SRNL+ HEI+EQVLA+E+IF HRVTNVVFMGMGEPM+NLKSVL AHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHA NQKLRE IVPSAK+YPL A+MKDCRDYF ETSRRVSFEYALLAGVND+VE A ELAELLHEWGRGYHVNLIPFNPIEGSEY+RP+KK V AFA ALES ++TVS RQTRGLDA AACGQLRN FQKSPL +SD + + DVAVAC Sbjct: 1 MTATSTSLIQRVCSVPLARAVRTRAMAVV-----------SMNLSTTPARSQALRADSRVLLGLSEPELQQLALDLKQQSYRGKQLHHLIYKRKIKDIQDFSQVPLAFRNELEEAGWKVGRSPIYQSVTAADGTVKLLIKLEDNRLIETVGIPVKDEKGVMRLTACVSSQVGCPLRCSFCATGKGGFSRNLKMHEIVEQVLAVEEIFNHRVTNVVFMGMGEPMMNLKSVLAAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLSALMKDCRDYFVETSRRVSFEYALLAGVNDAVEHAVELAELLHEWGRGYHVNLIPFNPIEGSEYQRPSKKAVQAFAAALESNRVTVSTRQTRGLDADAACGQLRNKFQKSPLPTDSDNLQPEEDVAVAC 412
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: D7TLU9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01070 PE=3 SV=1) HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0 Identity = 325/418 (77.75%), Postives = 360/418 (86.12%), Query Frame = -3 Query: 333 ISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1586 +++LQH+C PL RA R RS +S SR T+S+ S R HVD VLLGMSE +LQQL+++ GQQSYRGKQLHHLIYKRK KEIQ FS LPQAFRNDL + GW++GRS IY +VTAADGTVKLL+KL DNRL+ETVGIPVE +KGS RLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEI+EQVLAIE+IFK RVTNVVFMGMGEPMLNLKSV++AH+CLNKDVQIGQRMITIS+VGVPNTIKKLAS+KLQSTLA+SLHA NQKLRE IVPSAKSYPLDAIMKDCRDYF ETSRRVSFEY LLAGVND+VE A ELAELLHEWG GYHVNLIPFNPIEGSE++RP K V AFAGALESRK+TVS+RQTRGLDASAACGQLRN FQK PL +S+ +SQ DV +AC Sbjct: 1 MALLQHLCSAPLTRAIRSRSLALS---------SR--TMSTTLSPTRVAHVDSHVLLGMSEQELQQLSLDLGQQSYRGKQLHHLIYKRKVKEIQHFSQLPQAFRNDLQEGGWRVGRSSIYQSVTAADGTVKLLIKLADNRLVETVGIPVEHDKGSFRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIVEQVLAIEEIFKQRVTNVVFMGMGEPMLNLKSVIEAHRCLNKDVQIGQRMITISSVGVPNTIKKLASYKLQSTLAISLHAPNQKLRETIVPSAKSYPLDAIMKDCRDYFLETSRRVSFEYTLLAGVNDAVEHAIELAELLHEWGPGYHVNLIPFNPIEGSEFQRPYNKAVQAFAGALESRKVTVSVRQTRGLDASAACGQLRNEFQKIPLQSDSNNLQSQLDVPIAC 407
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: W9SVM6_9ROSA (Ribosomal RNA large subunit methyltransferase N OS=Morus notabilis GN=L484_010740 PE=3 SV=1) HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0 Identity = 322/445 (72.36%), Postives = 369/445 (82.92%), Query Frame = -3 Query: 333 FATKISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPS---RNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNK--------------------DVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1598 T ++ +QHVC ARA R RS + PS RNL+ + T+ +RA + D RVLLG+SE +LQQLAV+ GQQSYRGKQLHH IY+RK + ++DFS LP+AFRN+L AGW +GRSPIY +VTA DGT+KLL+KL+DNRLIETVGIPV+D+KGSMRLTACVSSQVGCPLRCSFCATGKGG+SRNLQ HEI+EQVLAIE+ FKHRVTNVVFMGMGEPMLN+K+VL+AH+CLNK DVQIGQRMITISTVGVPNTIK+LASHKLQSTLA+SLHA NQKLRE IVPSAK+YPLDAIMKDC++YF ETSRRVSFEYALLAGVND+VE A ELAELLH+WGRGYHVNLIPFNPIEGSEY+RP+KK AFA LESRKITVSIRQTRGL+A+AACGQLRN FQKSPL+++SD E+SQSDVAVAC Sbjct: 1 MGTPMAFIQHVCSASFARAVRTRSVAANTII-----PSHKRRNLSTTLTTTPSRAQNADSRVLLGLSETELQQLAVDLGQQSYRGKQLHHFIYQRKVRNVEDFSQLPKAFRNELRDAGWGVGRSPIYQSVTAPDGTIKLLIKLDDNRLIETVGIPVKDDKGSMRLTACVSSQVGCPLRCSFCATGKGGFSRNLQAHEIVEQVLAIEETFKHRVTNVVFMGMGEPMLNMKAVLEAHRCLNKTVKSPLKRKPVCDGTTVFLKDVQIGQRMITISTVGVPNTIKRLASHKLQSTLAISLHAPNQKLREAIVPSAKAYPLDAIMKDCKNYFLETSRRVSFEYALLAGVNDAVEHATELAELLHQWGRGYHVNLIPFNPIEGSEYKRPSKKVALAFAATLESRKITVSIRQTRGLEANAACGQLRNKFQKSPLVLDSDNEQSQSDVAVAC 440
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Match: A0A068TXM0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029892001 PE=3 SV=1) HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0 Identity = 311/418 (74.40%), Postives = 362/418 (86.60%), Query Frame = -3 Query: 333 ISMLQHVCVVPLARATRHRXXXXXXXXXXXXTPSRNLTVSSPTSSARAPHVDPRVLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRNNFQKSPLIIESDREESQSDVAVAC 1586 +++ QHV P ARA R R+ TV+ S T + + SS + +VLLGMSE +LQQLAV+FGQ+ YRGKQLHHL+YKRK K+IQDFS +P AFRN+L +AGW++GRSP+Y VTA+DGT+KLL+KLEDNRL+ETVGIPVED+KGS+RLTACVSSQVGCPLRCSFCATGKGG++RNL+RHEI+EQVLAIED+FKHRVTNVVFMGMGEPMLNLK VL+AH+CLNKD+QIGQRMITISTVGVPNTIKKLASHKLQSTLA+SLHA NQKLRE IVPSAKSYPL+ IMKDCRDYF ETSRRVSFEY LLAGVND++E A ELAELLHEWGR YHVNLIPFNP+EGS+Y+RP KK+ AFA ALESRKITVS+RQTRGLDASAACGQLRN FQKSPL+ ++ ++S S++AV+C Sbjct: 1 MAIFQHVVTAPFARAVRFRTLTVACSTVTLPSLKKKAEASSKVD------LQSQVLLGMSEQELQQLAVDFGQERYRGKQLHHLLYKRKVKQIQDFSQVPLAFRNELQEAGWRVGRSPVYKNVTASDGTIKLLIKLEDNRLVETVGIPVEDDKGSVRLTACVSSQVGCPLRCSFCATGKGGFARNLKRHEIVEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKEVLEAHRCLNKDIQIGQRMITISTVGVPNTIKKLASHKLQSTLAISLHAPNQKLRESIVPSAKSYPLEVIMKDCRDYFLETSRRVSFEYTLLAGVNDTIEHALELAELLHEWGRSYHVNLIPFNPVEGSDYQRPYKKSTLAFAAALESRKITVSVRQTRGLDASAACGQLRNQFQKSPLLTGAEDQQSNSEIAVSC 412
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_SYNY3 (Probable dual-specificity RNA methyltransferase RlmN OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rlmN PE=3 SV=1) HSP 1 Score: 349.747 bits (896), Expect = 4.717e-114 Identity = 173/324 (53.40%), Postives = 225/324 (69.44%), Query Frame = -3 Query: 408 GQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1373 GQ +YRGKQ+H +Y++ A+ + + LP+ +R + + IGRS I H A D T K LL+L D +IETVGIP S RLT CVSSQVGC + C+FCATGKGG+ RNL+ HEI++QVL +++ F RV+NVVFMGMGEP+LNL V+ A +CLN+ V IGQR +TISTVG+P I++LA LQ T AVSLHA NQ LR+ ++PSA+ YPL+ ++ DCR Y T RRV+FEY LLAGVND A ELA+ L RG+ HVNLIP+NPI +Y+RP + ++ FA L +I VS+R +RG+ A AACGQLR Sbjct: 24 GQPAYRGKQIHQWLYQKGARSLTAMTDLPKVWREKNVH--YPIGRSVIDHCAVAPDHTRKYLLRLADGLIIETVGIP-----SSKRLTVCVSSQVGCAMDCNFCATGKGGFIRNLESHEIVDQVLTVQEEFHERVSNVVFMGMGEPLLNLPQVVKAVECLNQVVGIGQRALTISTVGLPGKIRQLADRHLQVTFAVSLHAPNQTLRQSLIPSARHYPLEQLLADCRAYVETTGRRVTFEYVLLAGVNDQPVHAEELAQKL----RGFQTHVNLIPYNPISEVDYQRPTEAQINQFAQVLSDHRIAVSVRYSRGVQADAACGQLR 336
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_PROM1 (Probable dual-specificity RNA methyltransferase RlmN OS=Prochlorococcus marinus (strain NATL1A) GN=rlmN PE=3 SV=1) HSP 1 Score: 347.436 bits (890), Expect = 4.884e-113 Identity = 168/337 (49.85%), Postives = 236/337 (70.03%), Query Frame = -3 Query: 408 QQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLAS------HKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1394 ++ A + G++S+RG+Q+H IY+R AK + S LP+ +R+ L++ G +IGR + V A D T+KLL+ D ++ETVGIP + RLT CVSSQ+GCP+ C FCATGKGG +R+L +EI++QV+++ + R T+VVFMGMGEP+LN+++VLD+ +CL D+ IGQR IT+STVG+PNT+ LA ++Q TLAVSLHA NQ LRE+I+PSA SYP+++++KDC+ Y T RRVSFEY LL G+ND A +LA L+ RG+ HVNLI +NPI ++RP++ V+AF LE+R + VS+R +RG D AACGQLR Sbjct: 22 EEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTDK-----RLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQVISVRETMNRRPTHVVFMGMGEPLLNIQNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVQFTLAVSLHAPNQTLRELIIPSASSYPINSLLKDCKKYIDLTGRRVSFEYILLGGLNDKDIHAEQLANLM----RGFQSHVNLIAYNPIAEENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLR 349
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_PROMT (Probable dual-specificity RNA methyltransferase RlmN OS=Prochlorococcus marinus (strain NATL2A) GN=rlmN PE=3 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 1.386e-112 Identity = 167/337 (49.55%), Postives = 236/337 (70.03%), Query Frame = -3 Query: 408 QQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLAS------HKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGY--HVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1394 ++ A + G++S+RG+Q+H IY+R AK + S LP+ +R+ L++ G +IGR + V A D T+KLL+ D ++ETVGIP + RLT CVSSQ+GCP+ C FCATGKGG +R+L +EI++QV+++ + R T+VVFMGMGEP+LN+++VLD+ +CL D+ IGQR IT+STVG+PNT+ LA +++ TLAVSLHA NQ LRE+I+PSA SYP+++++KDC+ Y T RRVSFEY LL G+ND A +LA L+ RG+ HVNLI +NPI ++RP++ V+AF LE+R + VS+R +RG D AACGQLR Sbjct: 22 EEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTDK-----RLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQVISVRETMNRRPTHVVFMGMGEPLLNIRNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVKFTLAVSLHAPNQTLRELIIPSASSYPINSLLKDCKKYIELTGRRVSFEYILLGGLNDKDIHAEQLANLM----RGFQSHVNLIAYNPIAEENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLR 349
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_PROMA (Probable dual-specificity RNA methyltransferase RlmN OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=rlmN PE=3 SV=1) HSP 1 Score: 344.739 bits (883), Expect = 4.140e-112 Identity = 173/345 (50.14%), Postives = 235/345 (68.12%), Query Frame = -3 Query: 405 LLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLASHKL------QSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLRN 1421 LLG+ L++LA++ G+ YRG+QLH +Y++ + D + LP+A+RN LI+ G +G + A D T+KLLL D +IETVGIP + RLT CVSSQ+GCP+ C FCATGK G R+L+ +EI+ QV A++ F +NVVFMGMGEP+LN++ VL + CLNKD+ IGQR IT+STVGV NT+ +LA L Q TLA+SLHA NQKLRE ++PSA++YP+ +++DCR Y T RRVSFEY LL +ND +E A ELA+L+ G HVNLI +NPI+G ++RP+ + V+ F L+ R I VS+R +RGLD +AACGQLR+ Sbjct: 8 LLGLDLSQLERLALDHGESLYRGRQLHQWLYQKGVDNLDDITVLPKAWRNSLIQKGISVGGLVEVNRFIAGDRTIKLLLSTGDGEIIETVGIPSGN-----RLTICVSSQIGCPMGCQFCATGKDGLKRSLKVNEIVAQVFAVKKAFNRSPSNVVFMGMGEPLLNIEEVLSSICCLNKDLGIGQRRITVSTVGVKNTLPQLAELALQFLGSVQFTLALSLHAPNQKLRESLIPSAQNYPIKLLLEDCRHYLDLTGRRVSFEYILLGHLNDHIEHAEELADLVG--GFQSHVNLIAYNPIDGESFQRPSNQRVNIFIKTLQKRGIVVSLRASRGLDKNAACGQLRS 345
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS9 (Probable dual-specificity RNA methyltransferase RlmN OS=Synechococcus sp. (strain CC9902) GN=rlmN PE=3 SV=1) HSP 1 Score: 344.354 bits (882), Expect = 6.723e-112 Identity = 172/345 (49.86%), Postives = 230/345 (66.67%), Query Frame = -3 Query: 408 VLLGMSEHDLQQLAVEFGQQSYRGKQLHHLIYKRKAKEIQDFSHLPQAFRNDLIKAGWKIGRSPIYHTVTAADGTVKLLLKLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIIEQVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHQCLNKDVQIGQRMITISTVGVPNTIKKLAS------HKLQSTLAVSLHASNQKLREMIVPSAKSYPLDAIMKDCRDYFAETSRRVSFEYALLAGVNDSVEQARELAELLHEWGRGYHVNLIPFNPIEGSEYRRPNKKTVSAFAGALESRKITVSIRQTRGLDASAACGQLR 1424 VLLG S +L+ AV G +S+RG+Q+H +Y + K + + S LP+ +R +L +++GR + H AAD T KLLL +D IETVGIP + RLT C+SSQVGCP+ C FCATGK G R+L HEI++QVL++ + R ++VVFMGMGEP+LN ++VL+ +CLN D+ IGQR IT+STVGVP T+ +LA + Q TLAVSLHA NQ+LRE ++P+A +YP D ++ DCR Y T RRVSFEY LL +ND E A ELA+ + G HVNLI +NPIE E++RP + + AF LE R + VS+R +RGLD +AACGQLR Sbjct: 4 VLLGRSAAELEDWAVAQGHKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELEAQTFRVGRLKLVHQSVAADATTKLLLATDDGETIETVGIPTD-----QRLTVCISSQVGCPMACRFCATGKSGLQRSLATHEIVDQVLSVREAMDRRPSHVVFMGMGEPLLNSEAVLETIRCLNTDLGIGQRRITVSTVGVPKTLPQLAELAMEKLGRAQFTLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLTGRRVSFEYILLGELNDHPEHAAELADRVG--GFQSHVNLIAYNPIEEEEFKRPTSQRIEAFRRVLERRGVAVSLRASRGLDQNAACGQLR 341 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0008835 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008835 ID=g.arboreum_cottongen_reftransV1_0008835; Name=g.arboreum_cottongen_reftransV1_0008835; organism=Gossypium arboreum; type=contig; length=1672bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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