g.arboreum_cottongen_reftransV1_0021925, g.arboreum_cottongen_reftransV1_0021925 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0B2P1T7_GLYSO (Flowering time control protein FCA OS=Glycine soja GN=glysoja_004302 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.707e-24 Identity = 91/208 (43.75%), Postives = 125/208 (60.10%), Query Frame = 1 Query: 826 NQNMTLQQNSQASKHQ--WAG---MMPQAVGSAPAKTPGTDVPSS--ASAAMKPV------VECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXIRHPHQLQQP-IYPTAYPASGVRNQQSTQELGYGQLPVAP-SPNDPSRFQQGLQMVQDLAWKNKP*GT 1389 +Q +T QQN++A+K Q WAG + QAV S A P DVPSS A++A+ + V+C+WTEH SP+GFKYY+NS+T ES+WEKPEEL L+EQ++QQQ+ Q + A Q Q Q+ LQ Q+ H Q+Q P +++ A GV Q+ QE+GY QL + S DP R+ QG+ Q+L WKNKP G+ Sbjct: 543 SQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGS 750 HSP 2 Score: 98.2117 bits (243), Expect = 4.097e-18 Identity = 75/165 (45.45%), Postives = 90/165 (54.55%), Query Frame = 1 Query: 79 NFGDAMGDRVPP-TAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQ 570 N D +GDR+PP AW PM P +GP SN G++ MG L+ RS D+A+P N G P V S S Q FNQ QIP V QISPLQKP+ S Q LP S QL+PQAP+ Y QT Q Q+P LPSQ + G+SGQ S+P Q Sbjct: 306 NITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLP----------LPSQQVHGVSGQFPTSQPQTQ 460
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: K7MJS5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 9.061e-24 Identity = 90/208 (43.27%), Postives = 122/208 (58.65%), Query Frame = 1 Query: 826 NQNMTLQQNSQASKHQ--WAG---MMPQAVGSAPAKTPGTDVPSS--ASAAMKPV------VECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXIRHPHQLQQP-IYPTAYPASGVRNQQSTQELGYGQLPVAP-SPNDPSRFQQGLQMVQDLAWKNKP*GT 1389 +Q +T QQN++A+K Q WAG + QAV S A P DVPSS A++A+ + V+C+WTEH SP+GFKYY+NS+T ES+WEKPEEL L+EQ++QQQ+ Q Q Q Q+ LQ Q+ H Q+Q P +++ A GV Q+ QE+GY QL + S DP R+ QG+ Q+L WKNKP G Sbjct: 506 SQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV 713 HSP 2 Score: 77.0258 bits (188), Expect = 1.961e-11 Identity = 62/170 (36.47%), Postives = 79/170 (46.47%), Query Frame = 1 Query: 79 NFGDAMGDRVPP-TAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGH-QISPL----QKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQ 570 N D +GDR+PP AW PM P +GP SN G++ MG L+ RS D+A+P N G P P G Q+ + QKP+ S Q LP S QL+PQAP+ Y QT Q Q+P LPSQ + G+SGQ S+P Q Sbjct: 289 NITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGG-------------------------PIDGRFQVQSMPMSQQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLP----------LPSQQVHGVSGQFPTSQPQTQ 423
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: I1MRT0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.148e-23 Identity = 90/208 (43.27%), Postives = 122/208 (58.65%), Query Frame = 1 Query: 826 NQNMTLQQNSQASKHQ--WAG---MMPQAVGSAPAKTPGTDVPSS--ASAAMKPV------VECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXIRHPHQLQQP-IYPTAYPASGVRNQQSTQELGYGQLPVAP-SPNDPSRFQQGLQMVQDLAWKNKP*GT 1389 +Q +T QQN++A+K Q WAG + QAV S A P DVPSS A++A+ + V+C+WTEH SP+GFKYY+NS+T ES+WEKPEEL L+EQ++QQQ+ Q Q Q Q+ LQ Q+ H Q+Q P +++ A GV Q+ QE+GY QL + S DP R+ QG+ Q+L WKNKP G Sbjct: 526 SQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV 733 HSP 2 Score: 98.9821 bits (245), Expect = 2.578e-18 Identity = 75/165 (45.45%), Postives = 90/165 (54.55%), Query Frame = 1 Query: 79 NFGDAMGDRVPP-TAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQ 570 N D +GDR+PP AW PM P +GP SN G++ MG L+ RS D+A+P N G P V S S Q FNQ QIP V QISPLQKP+ S Q LP S QL+PQAP+ Y QT Q Q+P LPSQ + G+SGQ S+P Q Sbjct: 289 NITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLP----------LPSQQVHGVSGQFPTSQPQTQ 443
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A068TRA3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_3 OS=Coffea canephora GN=GSCOC_T00025651001 PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.940e-23 Identity = 84/178 (47.19%), Postives = 103/178 (57.87%), Query Frame = 1 Query: 79 NFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSH-----VGQLQVP-PASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585 N G+ + +R+PP AW PMSPQ +GP + G+ GN LLPR D+A PG+ S + +VSS+S S +NQS Q P+VG QISPLQKPL SPQ LPPS L P S+ Q+QT H Q Q+P P HTP +QALP L G GQLS S+P V N SS Sbjct: 355 NLGEPLNERIPPNAWQPMSPQNLGPPPSAGMHGFGNHLLPRPGDIAATSAPGSIPSSVSGNADRLLPGFAVSSTSMSQSNYNQSLPQAPSVGPQISPLQKPLQSPQYLPPSLLLQPSNAASFVQSQTYHASVRPFSQAQMPHPTGHTPLNQALPPDQLTGFGGQLSVSQPQVPLNASS 532 HSP 2 Score: 79.337 bits (194), Expect = 3.941e-12 Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQ--WAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVV----------ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFE 1080 PSNQ + Q+SK Q WAG PQ V + + G DV ++ SA P V +C+WTEH SP+G+KYY+NS T ESKWEKPEELTL+E Sbjct: 608 PSNQGL------QSSKQQALWAGTAPQKVVNNSDQL-GGDVAAAESA--NPTVPATSRAIAAGKCNWTEHISPEGYKYYYNSTTGESKWEKPEELTLYE 697
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: V4S6R2_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10006924mg PE=4 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 6.684e-23 Identity = 83/166 (50.00%), Postives = 99/166 (59.64%), Query Frame = 1 Query: 88 DAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585 D + D++P AWHPMSP+ MGP SNPGI + AD+ +P S+SS Q F Q SQ P++G QISPLQKPL SPQ++PP QLHPQ P SYS TQ SH+ QLQ+P T FSQALPSQHL G+SG L AS+P Q SS Sbjct: 165 DPITDQIPQNAWHPMSPRNMGPLSNPGI-------VGGPADVPLP---------------GLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPP-LQLHPQVPSSYSHTQNSHLRQLQIP--GQTSFSQALPSQHLLGMSGNLPASQPQGQQIASS 305 HSP 2 Score: 98.2117 bits (243), Expect = 2.869e-18 Identity = 56/95 (58.95%), Postives = 64/95 (67.37%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAA-MKPVV-------ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFE 1080 PSNQN+ LQQ SQ +K QWAG+ PQ V SAPA P D+P S S PV + WTEHTSPDG+KYY+N +T SKWEKPEELTLFE Sbjct: 384 PSNQNLPLQQGSQGTKQQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVTSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 478
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.040e-20 Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1 Query: 826 NQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPV--VECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFE 1080 NQN+ L QN +A K QWAG V S TP + V ++A A + V V+C WTEHTSPDGFKYY+N LT ESKWEKPEE+ +FE Sbjct: 543 NQNLPLSQNGRAGKQQWAGSAIPRVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFE 629 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021925 ID=g.arboreum_cottongen_reftransV1_0021925; Name=g.arboreum_cottongen_reftransV1_0021925; organism=Gossypium arboreum; type=contig; length=1803bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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