g.arboreum_cottongen_reftransV1_0021925, g.arboreum_cottongen_reftransV1_0021925 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0021925
Unique Nameg.arboreum_cottongen_reftransV1_0021925
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1803
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0021925:1..1803 .
Chr9:60783245..60786729 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0B2P1T7_GLYSO (Flowering time control protein FCA OS=Glycine soja GN=glysoja_004302 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.707e-24
Identity = 91/208 (43.75%), Postives = 125/208 (60.10%), Query Frame = 1
Query:  826 NQNMTLQQNSQASKHQ--WAG---MMPQAVGSAPAKTPGTDVPSS--ASAAMKPV------VECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXIRHPHQLQQP-IYPTAYPASGVRNQQSTQELGYGQLPVAP-SPNDPSRFQQGLQMVQDLAWKNKP*GT 1389
            +Q +T QQN++A+K Q  WAG    + QAV S  A  P  DVPSS  A++A+  +      V+C+WTEH SP+GFKYY+NS+T ES+WEKPEEL L+EQ++QQQ+    Q       +   A Q       Q Q+ LQ Q+ H  Q+Q P    +++ A GV   Q+ QE+GY QL  +  S  DP R+ QG+   Q+L WKNKP G+
Sbjct:  543 SQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGS 750          

HSP 2 Score: 98.2117 bits (243), Expect = 4.097e-18
Identity = 75/165 (45.45%), Postives = 90/165 (54.55%), Query Frame = 1
Query:   79 NFGDAMGDRVPP-TAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQ 570
            N  D +GDR+PP  AW PM P  +GP SN G++ MG  L+ RS D+A+P N G P             V S   S Q FNQ   QIP V  QISPLQKP+ S Q LP S QL+PQAP+ Y QT      Q Q+P          LPSQ + G+SGQ   S+P  Q
Sbjct:  306 NITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLP----------LPSQQVHGVSGQFPTSQPQTQ 460          
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: K7MJS5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.061e-24
Identity = 90/208 (43.27%), Postives = 122/208 (58.65%), Query Frame = 1
Query:  826 NQNMTLQQNSQASKHQ--WAG---MMPQAVGSAPAKTPGTDVPSS--ASAAMKPV------VECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXIRHPHQLQQP-IYPTAYPASGVRNQQSTQELGYGQLPVAP-SPNDPSRFQQGLQMVQDLAWKNKP*GT 1389
            +Q +T QQN++A+K Q  WAG    + QAV S  A  P  DVPSS  A++A+  +      V+C+WTEH SP+GFKYY+NS+T ES+WEKPEEL L+EQ++QQQ+    Q                  Q  Q Q+ LQ Q+ H  Q+Q P    +++ A GV   Q+ QE+GY QL  +  S  DP R+ QG+   Q+L WKNKP G 
Sbjct:  506 SQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV 713          

HSP 2 Score: 77.0258 bits (188), Expect = 1.961e-11
Identity = 62/170 (36.47%), Postives = 79/170 (46.47%), Query Frame = 1
Query:   79 NFGDAMGDRVPP-TAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGH-QISPL----QKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQ 570
            N  D +GDR+PP  AW PM P  +GP SN G++ MG  L+ RS D+A+P N G P                               P  G  Q+  +    QKP+ S Q LP S QL+PQAP+ Y QT      Q Q+P          LPSQ + G+SGQ   S+P  Q
Sbjct:  289 NITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGG-------------------------PIDGRFQVQSMPMSQQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLP----------LPSQQVHGVSGQFPTSQPQTQ 423          
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: I1MRT0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.148e-23
Identity = 90/208 (43.27%), Postives = 122/208 (58.65%), Query Frame = 1
Query:  826 NQNMTLQQNSQASKHQ--WAG---MMPQAVGSAPAKTPGTDVPSS--ASAAMKPV------VECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXIRHPHQLQQP-IYPTAYPASGVRNQQSTQELGYGQLPVAP-SPNDPSRFQQGLQMVQDLAWKNKP*GT 1389
            +Q +T QQN++A+K Q  WAG    + QAV S  A  P  DVPSS  A++A+  +      V+C+WTEH SP+GFKYY+NS+T ES+WEKPEEL L+EQ++QQQ+    Q                  Q  Q Q+ LQ Q+ H  Q+Q P    +++ A GV   Q+ QE+GY QL  +  S  DP R+ QG+   Q+L WKNKP G 
Sbjct:  526 SQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV 733          

HSP 2 Score: 98.9821 bits (245), Expect = 2.578e-18
Identity = 75/165 (45.45%), Postives = 90/165 (54.55%), Query Frame = 1
Query:   79 NFGDAMGDRVPP-TAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQ 570
            N  D +GDR+PP  AW PM P  +GP SN G++ MG  L+ RS D+A+P N G P             V S   S Q FNQ   QIP V  QISPLQKP+ S Q LP S QL+PQAP+ Y QT      Q Q+P          LPSQ + G+SGQ   S+P  Q
Sbjct:  289 NITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLP----------LPSQQVHGVSGQFPTSQPQTQ 443          
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A068TRA3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_3 OS=Coffea canephora GN=GSCOC_T00025651001 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.940e-23
Identity = 84/178 (47.19%), Postives = 103/178 (57.87%), Query Frame = 1
Query:   79 NFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSH-----VGQLQVP-PASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585
            N G+ + +R+PP AW PMSPQ +GP  + G+   GN LLPR  D+A    PG+     S  +       +VSS+S S   +NQS  Q P+VG QISPLQKPL SPQ LPPS  L P    S+ Q+QT H       Q Q+P P  HTP +QALP   L G  GQLS S+P V  N SS
Sbjct:  355 NLGEPLNERIPPNAWQPMSPQNLGPPPSAGMHGFGNHLLPRPGDIAATSAPGSIPSSVSGNADRLLPGFAVSSTSMSQSNYNQSLPQAPSVGPQISPLQKPLQSPQYLPPSLLLQPSNAASFVQSQTYHASVRPFSQAQMPHPTGHTPLNQALPPDQLTGFGGQLSVSQPQVPLNASS 532          

HSP 2 Score: 79.337 bits (194), Expect = 3.941e-12
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  820 PSNQNMTLQQNSQASKHQ--WAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVV----------ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFE 1080
            PSNQ +      Q+SK Q  WAG  PQ V +   +  G DV ++ SA   P V          +C+WTEH SP+G+KYY+NS T ESKWEKPEELTL+E
Sbjct:  608 PSNQGL------QSSKQQALWAGTAPQKVVNNSDQL-GGDVAAAESA--NPTVPATSRAIAAGKCNWTEHISPEGYKYYYNSTTGESKWEKPEELTLYE 697          
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: V4S6R2_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10006924mg PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.684e-23
Identity = 83/166 (50.00%), Postives = 99/166 (59.64%), Query Frame = 1
Query:   88 DAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585
            D + D++P  AWHPMSP+ MGP SNPGI       +   AD+ +P                    S+SS   Q F Q  SQ P++G QISPLQKPL SPQ++PP  QLHPQ P SYS TQ SH+ QLQ+P    T FSQALPSQHL G+SG L AS+P  Q   SS
Sbjct:  165 DPITDQIPQNAWHPMSPRNMGPLSNPGI-------VGGPADVPLP---------------GLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPP-LQLHPQVPSSYSHTQNSHLRQLQIP--GQTSFSQALPSQHLLGMSGNLPASQPQGQQIASS 305          

HSP 2 Score: 98.2117 bits (243), Expect = 2.869e-18
Identity = 56/95 (58.95%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAA-MKPVV-------ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFE 1080
            PSNQN+ LQQ SQ +K QWAG+ PQ V SAPA  P  D+P S S     PV        +  WTEHTSPDG+KYY+N +T  SKWEKPEELTLFE
Sbjct:  384 PSNQNLPLQQGSQGTKQQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVTSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 478          
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.040e-20
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  826 NQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPV--VECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFE 1080
            NQN+ L QN +A K QWAG     V S    TP + V ++A A  + V  V+C WTEHTSPDGFKYY+N LT ESKWEKPEE+ +FE
Sbjct:  543 NQNLPLSQNGRAGKQQWAGSAIPRVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFE 629          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2P1T7_GLYSO7.707e-2443.75Flowering time control protein FCA OS=Glycine soja... [more]
K7MJS5_SOYBN9.061e-2443.27Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1MRT0_SOYBN1.148e-2343.27Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A068TRA3_COFCA4.940e-2347.19Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
V4S6R2_9ROSI6.684e-2350.00Uncharacterized protein (Fragment) OS=Citrus cleme... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FCA_ARATH1.040e-2056.32Flowering time control protein FCA OS=Arabidopsis ... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 292..324
e-value: 7.1E-9
score: 45.5
IPR001202WW domainPFAMPF00397WWcoord: 296..322
e-value: 3.9E-9
score: 36.2
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 291..324
score: 12.236
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 296..329
NoneNo IPR availableGENE3D2.20.70.10coord: 295..325
e-value: 6.6E-15
score: 53.7

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0021925 ID=g.arboreum_cottongen_reftransV1_0021925; Name=g.arboreum_cottongen_reftransV1_0021925; organism=Gossypium arboreum; type=contig; length=1803bp
TCAAGGGGTGGTGCTGCTGCATTTGGAGGTCCAGGTTTTGGTCCTCGTTT
CCAAACACCAAGGCCTAGACCAGCACCCAACTTTGGTGATGCAATGGGGG
ATCGTGTTCCACCTACTGCTTGGCACCCTATGAGTCCACAGAAAATGGGA
CCAACTTCTAATCCTGGCATTCGGAGTATGGGGAACCAGTTGCTACCTAG
GTCTGCTGACCTAGCAATACCTTTAAATCCAGGTGCTCCTTTTGGTGGCC
CTTCAGATGGTTCTCTTCCTGGCCTTTCAGTTTCATCTTCATCTACTTCA
GTACAGGGATTTAATCAATCTTCATCACAAATTCCAACTGTTGGTCATCA
GATTTCACCTTTACAGAAGCCCCTTGGTTCACCACAGAATCTACCGCCTT
CCTTTCAACTACACCCGCAAGCACCTATGTCATACTCGCAGACACAAACT
TCACATGTTGGTCAACTTCAAGTTCCTCCTGCTAGTCATACTCCCTTCAG
TCAAGCTCTTCCCTCACAACATTTAGCTGGTTTGAGTGGCCAGTTGTCTG
CGTCTCGGCCACTGGTTCAGCCGAATGTTTCATCTGGTGCAGCACTACAA
AACCCTTTGAATGTCAACTTACCGCCCAATTCTGCGGCCAGTGCTGCAAA
TCAACAACAGTTACCTGCTCCTAACCAGCAGCAGCCGCTGCAACCACTTC
AGCAATCCCCTTCTCAGCTAGCGCAGATGCTGTCTCAACAAACACAAACT
CTGCAAGCAAGCTTCCAATCATCTCAGCAGGCATTTTCTCAGCTGCAGCA
ACAATTGCAGCTGATGCAACCTTCAAATCAAAATATGACATTGCAGCAGA
ATTCTCAGGCTTCTAAACATCAGTGGGCTGGTATGATGCCGCAGGCTGTT
GGCAGCGCTCCTGCCAAAACACCTGGTACAGATGTTCCTTCATCTGCATC
TGCTGCTATGAAACCGGTAGTAGAATGTCATTGGACAGAGCATACTTCAC
CTGACGGGTTCAAATACTATCATAACAGTCTAACACGTGAAAGCAAGTGG
GAGAAGCCCGAAGAATTAACTTTGTTTGAACAACAGCAGCAGCAACAACA
AAAGCCACCTGTTCAACAACCTCAAACTCAGTTACATGCTGCTCAGCAAG
CTTCACAACAGGCACAGCTGCAAACCCAGCTTCAGACACAGATTCGCCAT
CCTCACCAGTTACAGCAGCCTATCTATCCCACAGCGTATCCAGCTTCTGG
AGTTAGAAATCAACAAAGTACACAGGAACTTGGTTACGGACAATTACCAG
TGGCACCATCACCCAATGATCCATCACGATTCCAACAGGGGCTTCAGATG
GTACAGGATTTAGCATGGAAGAATAAGCCATAAGGGACTTGAAATTGGAA
GCTGAGGAGAGTCTCCTAGGGGGAATCGTGTTTCTTTTAGAAGAATGCCG
GGCGATCATAAAAACACAAATAGTCATGGCAAATGGCAATGGCATGGATG
CAGCAGCAACCCATTTTAAGCTAAAATGCCTGGCAGATGAGATGTGTAAT
AATAGAAGCTACAATATATGTAATAGTAAATCTTCTCAGAATTTAGTGTG
GTAAAAAGCCTTTGCTTGGTTACAGGCATTTTATGCTTTTGCCATTAAAT
ATTAGGGCAATGAAAGCCATCTGTATTTGTGTAACATAATATAAGTTCCT
ATAATAACCCGATACTTAGAAAAAAGAACTCTCGTTTTTGCTCTGAAATG
TCGACATACATCACCCTCCCAAGTTAGATTCTGGTCATTAGTTCTTTATT
TTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding