g.arboreum_cottongen_reftransV1_0008529, g.arboreum_cottongen_reftransV1_0008529 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: D7LSP2_ARALL (EMB1703 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_324617 PE=4 SV=1) HSP 1 Score: 536.569 bits (1381), Expect = 2.240e-176 Identity = 281/391 (71.87%), Postives = 334/391 (85.42%), Query Frame = 2 Query: 2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEG-QRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGV 1171 +K F +GLEKKVE ENEKLSHLH+W+HSN+ENLDYG DGIS++DPPEKIIPRWKGP L+K+PEFL+N+ EQR+ALF+GK P K + QS Q+ +ES +E+ SSE + PKIV+E SDGSV+PGKKSGKEYWQHTKKWSRGFLE YNAETDPEVK++M+DMGKDLDRWITE+E+++AAD+M+KLPERNKKFMEKKLNK+KREMELFGPQAV+SKY+EY E+KEEDYLWWLDLPHVLC+ELYT ++ G Q++GFY LEMA DLELEPKPHHVIAFE DC++ CYI+QAHLDML G FIVP+PPKDA+REAKANGFGVTVI+KGEL+LN+D+ LEEVEE+ICE+GSKMYHDKIM +RSVDISSLMKG+ + Sbjct: 729 DKAMFLKGLEKKVEKENEKLSHLHQWIHSNVENLDYGVDGISVYDPPEKIIPRWKGPSLDKNPEFLNNYHEQREALFSGKAASVSPMKYEEQSSHQELSESASSENTLTPSSE---------ITSSQPKIVVEGSDGSVRPGKKSGKEYWQHTKKWSRGFLELYNAETDPEVKAVMRDMGKDLDRWITEEEIKDAADIMEKLPERNKKFMEKKLNKIKREMELFGPQAVMSKYREYGEDKEEDYLWWLDLPHVLCLELYTIDDNGEQQVGFYTLEMAKDLELEPKPHHVIAFEHAADCRNLCYIIQAHLDMLRTGNVFIVPRPPKDAYREAKANGFGVTVIRKGELKLNIDEPLEEVEEEICELGSKMYHDKIMGDRSVDISSLMKGVFNL 1110
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: M0ZH31_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000228 PE=4 SV=1) HSP 1 Score: 536.569 bits (1381), Expect = 1.755e-175 Identity = 271/393 (68.96%), Postives = 326/393 (82.95%), Query Frame = 2 Query: 2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTR--KVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVG 1174 +KLAFF GLEKKV+ EN++L +LHEWLHSNIENLDYGADGISL+DPPEKIIPRWKGPPLE S EFL+ F EQRK + V + K++ Q Q ESP SSS+ D T + D TK P+ +IESSDGS+K GKKSGKEYWQ+TKKWS+GFLE YNAETDPE+KS+MKD+GKDLD+WITE+E++EAADLM LPE+ KK +++KL+K+KREMELFGPQAVVSKY+EYA+EKEEDYLWWLDLP VLCIELYT E + GFY+LEMAADLEL+PK +HVIAFED GDCK+ CYI+QAH++MLGNG AF+V +PPKDA+R+ K NGF VTVIKKG+LQLNVDQ+LEEVEE I +IGSK+YHDKIMRERS+D++++MKG+ G G Sbjct: 818 DKLAFFSGLEKKVDQENKQLQNLHEWLHSNIENLDYGADGISLYDPPEKIIPRWKGPPLEGSSEFLNYFVEQRKVV-AESVKSSNLIKKERQDLPQGLQESP-------SSSKIDSTSAISIQDAKTKTPRTIIESSDGSIKAGKKSGKEYWQNTKKWSQGFLESYNAETDPEIKSVMKDVGKDLDKWITEREIKEAADLMDNLPEKGKKLIKEKLDKVKREMELFGPQAVVSKYREYADEKEEDYLWWLDLPRVLCIELYTEEEGEMKAGFYSLEMAADLELDPKQYHVIAFEDAGDCKNLCYIIQAHMEMLGNGNAFVVARPPKDAYRDTKTNGFNVTVIKKGQLQLNVDQSLEEVEEAITDIGSKIYHDKIMRERSLDVTTVMKGVFGTG 1202
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: Q9M360_ARATH (Protein embryo defective 1703 OS=Arabidopsis thaliana GN=F15G16.170 PE=4 SV=1) HSP 1 Score: 533.487 bits (1373), Expect = 2.736e-175 Identity = 284/391 (72.63%), Postives = 332/391 (84.91%), Query Frame = 2 Query: 2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEG-QRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGV 1171 +K F QGLEKKVE ENEKLSHLH+W+HSNIENLDYG DG+S++DP EKIIPRWKGP L+K+PEFL+N+ EQR+ALF+ K P K + QS Q+ +ES +E+ SSE + PKIV+E SDGSV+PGKKSGKEYWQHTKKWSRGFLE YNAETDPEVK++M+DMGKDLDRWITE E+++AAD+M+KLPERNKKFMEKKLNKLKREMELFGPQAV+SKY+EY E+KEEDYLWWLDLPHVLC+ELYT + G Q++GFY LEMA DLELEPKPHHVIAFED DC++ CYI+QAHLDML +G FIVP+PPKDA+REAKANGFGVTVI+KGEL+LN+D+ LEEVEE+ICEIGSKMYHDKIM ERSVDISSLMKG+ + Sbjct: 716 DKAMFLQGLEKKVEKENEKLSHLHQWIHSNIENLDYGVDGVSVYDPLEKIIPRWKGPSLDKNPEFLNNYHEQREALFSEKAASVSPVKYEEQSSHQELSESASSENTLTPSSE---------ITSSQPKIVVEGSDGSVRPGKKSGKEYWQHTKKWSRGFLELYNAETDPEVKAVMRDMGKDLDRWITEDEIKDAADIMEKLPERNKKFMEKKLNKLKREMELFGPQAVLSKYREYGEDKEEDYLWWLDLPHVLCLELYTVDENGEQQVGFYTLEMATDLELEPKPHHVIAFEDAADCRNLCYIIQAHLDMLRSGNVFIVPRPPKDAYREAKANGFGVTVIRKGELKLNIDEPLEEVEEEICEIGSKMYHDKIMGERSVDISSLMKGVFNL 1097
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: A0A0A0L754_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119550 PE=4 SV=1) HSP 1 Score: 533.102 bits (1372), Expect = 5.074e-175 Identity = 289/390 (74.10%), Postives = 327/390 (83.85%), Query Frame = 2 Query: 2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGV 1171 +KLAFF GLEKKVE +NEKL LHEWLHSNIENLDYGADGIS++DPPEKIIPRWKGP EKSPEF ++F EQRK +F K + +D QS KP S N D D +H+ + K +IESSDGS++PGKKSGKE+WQHTKKWSRGFLECYNAETDPEVKS+MKD+GKDLDRW+TE+EVQ+ ADLM KLPE+NKKFMEKKLNK +REME+FGPQAV SKY EYAEE+EEDYLWWLDL HVLCIELYT E+E QRIGFY+LEMA DLELEPKP HVIAFED DCK+FCYI+Q+HL+MLG G AFIV +PPKDAFREAKANGFGVTVI+KGELQLNVDQTLEEVEE+I EIGSKMYHDKIM+ RSVDISSLM+G+ G+ Sbjct: 731 DKLAFFNGLEKKVERQNEKLLKLHEWLHSNIENLDYGADGISIYDPPEKIIPRWKGPTFEKSPEFFNDFLEQRKVIFDRKADLPLSMNKDEQS-SSKPNGSIENID--------DPNMAIHNQERKKSMTIIESSDGSIRPGKKSGKEFWQHTKKWSRGFLECYNAETDPEVKSVMKDIGKDLDRWVTEEEVQQVADLMNKLPEKNKKFMEKKLNKFRREMEMFGPQAVASKYSEYAEEEEEDYLWWLDLRHVLCIELYTMEDEEQRIGFYSLEMATDLELEPKPCHVIAFEDASDCKNFCYIIQSHLEMLGTGIAFIVARPPKDAFREAKANGFGVTVIRKGELQLNVDQTLEEVEEEITEIGSKMYHDKIMKGRSVDISSLMEGVFGL 1111
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: V7ARM5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G114600g PE=4 SV=1) HSP 1 Score: 536.184 bits (1380), Expect = 1.046e-174 Identity = 278/397 (70.03%), Postives = 322/397 (81.11%), Query Frame = 2 Query: 2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRK-----VHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVGD 1177 +K FF+GLEKKVE EN KLS++HEWLHSNIENLDYGADGIS++DPPEKIIPRWKGP +EK PEFL+ F ++RK G P K+D F AI+SS+S K V + K+PK +IE SDGSVK GKKSGKEYWQHTKKWS+GFL+CYN ETDPEVKS+MKDMGKDLDRWITEKE++EAADLM KLP+RNK FMEKKLNK+KREMELFGPQAVVSKY+EYA++KE+DYLWWLDL H+LCIELYT E Q++G Y+LEMA DLELEPKP HVIAF+D DCK+ CYI+QAH++MLGNG AF+V +PPKDAFREAKANGFGVTVIKKGEL LN+DQ LEEVEE I EIGSKMYHD +M+ERSVDI++LMKG+ G D Sbjct: 888 DKDTFFRGLEKKVEKENMKLSYVHEWLHSNIENLDYGADGISIYDPPEKIIPRWKGPAVEKIPEFLNEFLDERK---IGSTRNMNPVKKDESGF-------------AITSSDSSSQEKFDGSTVPNKKLKNPKTIIEGSDGSVKAGKKSGKEYWQHTKKWSQGFLDCYNDETDPEVKSVMKDMGKDLDRWITEKEIKEAADLMDKLPDRNKSFMEKKLNKIKREMELFGPQAVVSKYREYADDKEQDYLWWLDLSHILCIELYTVEEGEQKVGLYSLEMAGDLELEPKPSHVIAFQDPSDCKNLCYIIQAHMEMLGNGNAFVVARPPKDAFREAKANGFGVTVIKKGELHLNIDQPLEEVEELITEIGSKMYHDMMMKERSVDINTLMKGVFGFND 1268 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008529 ID=g.arboreum_cottongen_reftransV1_0008529; Name=g.arboreum_cottongen_reftransV1_0008529; organism=Gossypium arboreum; type=contig; length=1357bpback to top |