g.arboreum_cottongen_reftransV1_0008529, g.arboreum_cottongen_reftransV1_0008529 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008529
Unique Nameg.arboreum_cottongen_reftransV1_0008529
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1357
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0008529:1..1357 .
Chr4:8021606..8024025 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: D7LSP2_ARALL (EMB1703 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_324617 PE=4 SV=1)

HSP 1 Score: 536.569 bits (1381), Expect = 2.240e-176
Identity = 281/391 (71.87%), Postives = 334/391 (85.42%), Query Frame = 2
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEG-QRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGV 1171
            +K  F +GLEKKVE ENEKLSHLH+W+HSN+ENLDYG DGIS++DPPEKIIPRWKGP L+K+PEFL+N+ EQR+ALF+GK     P K + QS  Q+ +ES  +E+    SSE           +  PKIV+E SDGSV+PGKKSGKEYWQHTKKWSRGFLE YNAETDPEVK++M+DMGKDLDRWITE+E+++AAD+M+KLPERNKKFMEKKLNK+KREMELFGPQAV+SKY+EY E+KEEDYLWWLDLPHVLC+ELYT ++ G Q++GFY LEMA DLELEPKPHHVIAFE   DC++ CYI+QAHLDML  G  FIVP+PPKDA+REAKANGFGVTVI+KGEL+LN+D+ LEEVEE+ICE+GSKMYHDKIM +RSVDISSLMKG+  +
Sbjct:  729 DKAMFLKGLEKKVEKENEKLSHLHQWIHSNVENLDYGVDGISVYDPPEKIIPRWKGPSLDKNPEFLNNYHEQREALFSGKAASVSPMKYEEQSSHQELSESASSENTLTPSSE---------ITSSQPKIVVEGSDGSVRPGKKSGKEYWQHTKKWSRGFLELYNAETDPEVKAVMRDMGKDLDRWITEEEIKDAADIMEKLPERNKKFMEKKLNKIKREMELFGPQAVMSKYREYGEDKEEDYLWWLDLPHVLCLELYTIDDNGEQQVGFYTLEMAKDLELEPKPHHVIAFEHAADCRNLCYIIQAHLDMLRTGNVFIVPRPPKDAYREAKANGFGVTVIRKGELKLNIDEPLEEVEEEICELGSKMYHDKIMGDRSVDISSLMKGVFNL 1110          
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: M0ZH31_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000228 PE=4 SV=1)

HSP 1 Score: 536.569 bits (1381), Expect = 1.755e-175
Identity = 271/393 (68.96%), Postives = 326/393 (82.95%), Query Frame = 2
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTR--KVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVG 1174
            +KLAFF GLEKKV+ EN++L +LHEWLHSNIENLDYGADGISL+DPPEKIIPRWKGPPLE S EFL+ F EQRK +    V  +   K++ Q   Q   ESP       SSS+ D T    + D  TK P+ +IESSDGS+K GKKSGKEYWQ+TKKWS+GFLE YNAETDPE+KS+MKD+GKDLD+WITE+E++EAADLM  LPE+ KK +++KL+K+KREMELFGPQAVVSKY+EYA+EKEEDYLWWLDLP VLCIELYT E    + GFY+LEMAADLEL+PK +HVIAFED GDCK+ CYI+QAH++MLGNG AF+V +PPKDA+R+ K NGF VTVIKKG+LQLNVDQ+LEEVEE I +IGSK+YHDKIMRERS+D++++MKG+ G G
Sbjct:  818 DKLAFFSGLEKKVDQENKQLQNLHEWLHSNIENLDYGADGISLYDPPEKIIPRWKGPPLEGSSEFLNYFVEQRKVV-AESVKSSNLIKKERQDLPQGLQESP-------SSSKIDSTSAISIQDAKTKTPRTIIESSDGSIKAGKKSGKEYWQNTKKWSQGFLESYNAETDPEIKSVMKDVGKDLDKWITEREIKEAADLMDNLPEKGKKLIKEKLDKVKREMELFGPQAVVSKYREYADEKEEDYLWWLDLPRVLCIELYTEEEGEMKAGFYSLEMAADLELDPKQYHVIAFEDAGDCKNLCYIIQAHMEMLGNGNAFVVARPPKDAYRDTKTNGFNVTVIKKGQLQLNVDQSLEEVEEAITDIGSKIYHDKIMRERSLDVTTVMKGVFGTG 1202          
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: Q9M360_ARATH (Protein embryo defective 1703 OS=Arabidopsis thaliana GN=F15G16.170 PE=4 SV=1)

HSP 1 Score: 533.487 bits (1373), Expect = 2.736e-175
Identity = 284/391 (72.63%), Postives = 332/391 (84.91%), Query Frame = 2
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEG-QRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGV 1171
            +K  F QGLEKKVE ENEKLSHLH+W+HSNIENLDYG DG+S++DP EKIIPRWKGP L+K+PEFL+N+ EQR+ALF+ K     P K + QS  Q+ +ES  +E+    SSE           +  PKIV+E SDGSV+PGKKSGKEYWQHTKKWSRGFLE YNAETDPEVK++M+DMGKDLDRWITE E+++AAD+M+KLPERNKKFMEKKLNKLKREMELFGPQAV+SKY+EY E+KEEDYLWWLDLPHVLC+ELYT +  G Q++GFY LEMA DLELEPKPHHVIAFED  DC++ CYI+QAHLDML +G  FIVP+PPKDA+REAKANGFGVTVI+KGEL+LN+D+ LEEVEE+ICEIGSKMYHDKIM ERSVDISSLMKG+  +
Sbjct:  716 DKAMFLQGLEKKVEKENEKLSHLHQWIHSNIENLDYGVDGVSVYDPLEKIIPRWKGPSLDKNPEFLNNYHEQREALFSEKAASVSPVKYEEQSSHQELSESASSENTLTPSSE---------ITSSQPKIVVEGSDGSVRPGKKSGKEYWQHTKKWSRGFLELYNAETDPEVKAVMRDMGKDLDRWITEDEIKDAADIMEKLPERNKKFMEKKLNKLKREMELFGPQAVLSKYREYGEDKEEDYLWWLDLPHVLCLELYTVDENGEQQVGFYTLEMATDLELEPKPHHVIAFEDAADCRNLCYIIQAHLDMLRSGNVFIVPRPPKDAYREAKANGFGVTVIRKGELKLNIDEPLEEVEEEICEIGSKMYHDKIMGERSVDISSLMKGVFNL 1097          
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: A0A0A0L754_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119550 PE=4 SV=1)

HSP 1 Score: 533.102 bits (1372), Expect = 5.074e-175
Identity = 289/390 (74.10%), Postives = 327/390 (83.85%), Query Frame = 2
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGV 1171
            +KLAFF GLEKKVE +NEKL  LHEWLHSNIENLDYGADGIS++DPPEKIIPRWKGP  EKSPEF ++F EQRK +F  K  +     +D QS   KP  S  N D        D    +H+ + K    +IESSDGS++PGKKSGKE+WQHTKKWSRGFLECYNAETDPEVKS+MKD+GKDLDRW+TE+EVQ+ ADLM KLPE+NKKFMEKKLNK +REME+FGPQAV SKY EYAEE+EEDYLWWLDL HVLCIELYT E+E QRIGFY+LEMA DLELEPKP HVIAFED  DCK+FCYI+Q+HL+MLG G AFIV +PPKDAFREAKANGFGVTVI+KGELQLNVDQTLEEVEE+I EIGSKMYHDKIM+ RSVDISSLM+G+ G+
Sbjct:  731 DKLAFFNGLEKKVERQNEKLLKLHEWLHSNIENLDYGADGISIYDPPEKIIPRWKGPTFEKSPEFFNDFLEQRKVIFDRKADLPLSMNKDEQS-SSKPNGSIENID--------DPNMAIHNQERKKSMTIIESSDGSIRPGKKSGKEFWQHTKKWSRGFLECYNAETDPEVKSVMKDIGKDLDRWVTEEEVQQVADLMNKLPEKNKKFMEKKLNKFRREMEMFGPQAVASKYSEYAEEEEEDYLWWLDLRHVLCIELYTMEDEEQRIGFYSLEMATDLELEPKPCHVIAFEDASDCKNFCYIIQSHLEMLGTGIAFIVARPPKDAFREAKANGFGVTVIRKGELQLNVDQTLEEVEEEITEIGSKMYHDKIMKGRSVDISSLMEGVFGL 1111          
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: V7ARM5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G114600g PE=4 SV=1)

HSP 1 Score: 536.184 bits (1380), Expect = 1.046e-174
Identity = 278/397 (70.03%), Postives = 322/397 (81.11%), Query Frame = 2
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRK-----VHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVGD 1177
            +K  FF+GLEKKVE EN KLS++HEWLHSNIENLDYGADGIS++DPPEKIIPRWKGP +EK PEFL+ F ++RK    G      P K+D   F             AI+SS+S    K     V +   K+PK +IE SDGSVK GKKSGKEYWQHTKKWS+GFL+CYN ETDPEVKS+MKDMGKDLDRWITEKE++EAADLM KLP+RNK FMEKKLNK+KREMELFGPQAVVSKY+EYA++KE+DYLWWLDL H+LCIELYT E   Q++G Y+LEMA DLELEPKP HVIAF+D  DCK+ CYI+QAH++MLGNG AF+V +PPKDAFREAKANGFGVTVIKKGEL LN+DQ LEEVEE I EIGSKMYHD +M+ERSVDI++LMKG+ G  D
Sbjct:  888 DKDTFFRGLEKKVEKENMKLSYVHEWLHSNIENLDYGADGISIYDPPEKIIPRWKGPAVEKIPEFLNEFLDERK---IGSTRNMNPVKKDESGF-------------AITSSDSSSQEKFDGSTVPNKKLKNPKTIIEGSDGSVKAGKKSGKEYWQHTKKWSQGFLDCYNDETDPEVKSVMKDMGKDLDRWITEKEIKEAADLMDKLPDRNKSFMEKKLNKIKREMELFGPQAVVSKYREYADDKEQDYLWWLDLSHILCIELYTVEEGEQKVGLYSLEMAGDLELEPKPSHVIAFQDPSDCKNLCYIIQAHMEMLGNGNAFVVARPPKDAFREAKANGFGVTVIKKGELHLNIDQPLEEVEELITEIGSKMYHDMMMKERSVDINTLMKGVFGFND 1268          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7LSP2_ARALL2.240e-17671.87EMB1703 OS=Arabidopsis lyrata subsp. lyrata GN=ARA... [more]
M0ZH31_SOLTU1.755e-17568.96Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
Q9M360_ARATH2.736e-17572.63Protein embryo defective 1703 OS=Arabidopsis thali... [more]
A0A0A0L754_CUCSA5.074e-17574.10Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
V7ARM5_PHAVU1.046e-17470.03Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34962:SF1PROTEIN EMBRYO DEFECTIVE 1703coord: 1..399
NoneNo IPR availablePANTHERPTHR34962FAMILY NOT NAMEDcoord: 1..399

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008529 ID=g.arboreum_cottongen_reftransV1_0008529; Name=g.arboreum_cottongen_reftransV1_0008529; organism=Gossypium arboreum; type=contig; length=1357bp
AGAGAAACTTGCATTCTTCCAAGGTCTGGAGAAGAAAGTTGAGAATGAAA
ATGAAAAACTATCTCACCTCCATGAGTGGCTTCATTCAAATATTGAAAAC
CTTGATTACGGAGCAGATGGTATCAGCCTGCATGATCCACCAGAAAAAAT
TATACCACGCTGGAAGGGGCCCCCATTAGAGAAAAGTCCTGAGTTCCTCA
GCAACTTCCAAGAACAGCGTAAAGCACTTTTTACCGGAAAAGTTGGTATG
ACATATCCAGCAAAAAGAGATGGGCAAAGTTTCCTTCAGAAACCCACAGA
ATCCCCCATTAATGAAGATTTAGCTATTTCCTCATCAGAATCAGATTTGA
CTAGGAAAGTTCATGATACTGATACAAAGGATCCCAAGATAGTTATTGAA
AGCAGTGATGGCTCTGTCAAACCTGGTAAAAAATCCGGAAAGGAGTATTG
GCAGCACACAAAGAAATGGTCCCGTGGGTTCTTGGAATGTTATAATGCAG
AAACTGACCCTGAAGTCAAATCCATTATGAAGGATATGGGGAAGGATTTG
GACCGATGGATCACTGAAAAAGAGGTACAAGAAGCGGCAGATCTTATGAA
GAAACTTCCTGAAAGAAACAAAAAGTTCATGGAAAAGAAACTCAACAAGC
TTAAAAGAGAAATGGAATTATTTGGACCACAAGCTGTTGTTAGCAAGTAT
CAAGAGTATGCAGAGGAGAAGGAAGAAGATTATTTGTGGTGGTTAGATCT
TCCACATGTACTGTGTATTGAATTATACACATTTGAAAATGAGGGGCAGA
GGATAGGATTTTATGCACTGGAGATGGCAGCAGATCTTGAACTTGAGCCA
AAACCACACCATGTGATTGCTTTTGAAGATACTGGTGATTGCAAAAGCTT
TTGTTACATCATGCAGGCTCACTTGGATATGCTAGGAAACGGCAGGGCCT
TTATTGTTCCACAGCCACCTAAGGATGCTTTTCGGGAAGCCAAAGCAAAC
GGTTTTGGCGTAACTGTGATCAAGAAAGGGGAGCTACAGCTGAATGTGGA
TCAAACTTTAGAAGAGGTGGAAGAGCAAATATGTGAGATTGGGAGCAAGA
TGTACCATGATAAGATCATGCGTGAACGCTCTGTGGATATAAGCTCATTG
ATGAAGGGCATGCTTGGTGTTGGTGATAAACCCAGGAGGAGAAGGTCAAA
GAAGAAGCTCAAAAAGCCTTCCAAGAAATGAATTGAGGACCAATTGACTA
CTTGAGAAGTGCCGGGTCACTGAGGTTCGAAATTAATTTCTTTTCCTTGG
TCTCTACTTGTAATTCAAACATTACAGCTTTCATAAAAAAAATCATAAGT
GCCTGCA
back to top