g.arboreum_cottongen_reftransV1_0006478, g.arboreum_cottongen_reftransV1_0006478 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006478
Unique Nameg.arboreum_cottongen_reftransV1_0006478
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1140
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeg.arboreum_cottongen_reftransV1_0006478:1..1140 .
Chr1:70117294..70120339 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Match: A0A078ENA4_BRANA (BnaA03g39830D protein OS=Brassica napus GN=BnaA03g39830D PE=4 SV=1)

HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 253/323 (78.33%), Postives = 282/323 (87.31%), Query Frame = 2
Query:  179 METVFSAASRSISKLIXXXXXXXXXXXXXXXXXXEAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAV---LGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            ME+  S ++  +SK+      ++FL S S+FTSTEAYDALDP GNIT+KWDV+SWTPDGYVAVVTM+NFQ+YRHI +PGWTLGW WAKKEVIWSM+G+QTTEQGDCSKYKGN+PHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDP  AASSFQ+SVGAAGTTNKTVRVPRNFTL  PGPGYTCGPAKIV+PT+F+T D RR TQAMMTWN+TCTYSQFLAQ+TPTCCVSLSSFYN TIV CPTCACGCQNN TESG+C+   + HLAS V     K T  PPL+QCT H+CP+R+HWHVK NYKEYWRVKITITNF
Sbjct:    1 MESFISRSTSIVSKMSFLAVGIVFLVSSSSFTSTEAYDALDPEGNITMKWDVMSWTPDGYVAVVTMFNFQKYRHIPSPGWTLGWKWAKKEVIWSMVGAQTTEQGDCSKYKGNLPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPGTAASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTQFVTPDTRRTTQAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNKTESGACLDPDTPHLASVVSPPTKKGTILPPLVQCTRHLCPIRVHWHVKQNYKEYWRVKITITNF 323          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Match: A0A0D3DDH0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 253/323 (78.33%), Postives = 282/323 (87.31%), Query Frame = 2
Query:  179 METVFSAASRSISKLIXXXXXXXXXXXXXXXXXXEAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAV---LGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            ME+  S ++  +SK+      ++FL S S+FTSTEAYDALDP GNIT+KWDV+SWTPDGYVAVVTM+NFQ+YRHI +PGWTLGW WAKKEVIWSM+G+QTTEQGDCSKYKGN+PHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDP  AASSFQ+SVGAAGTTNKTVRVPRNFTL  PGPGYTCGPAKIV+PT+F+T D RR TQAMMTWN+TCTYSQFLAQ+TPTCCVSLSSFYN TIV CPTCACGCQNN TESG+C+   + HLAS V     K T  PPL+QCT H+CP+R+HWHVK NYKEYWRVKITITNF
Sbjct:    1 MESFISRSTSIVSKMSFLAVGIVFLISSSSFTSTEAYDALDPEGNITMKWDVMSWTPDGYVAVVTMFNFQKYRHIPSPGWTLGWKWAKKEVIWSMVGAQTTEQGDCSKYKGNLPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPGTAASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTQFVTPDTRRTTQAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNKTESGACLDPDTPHLASVVSPPTKKGTILPPLVQCTRHLCPIRVHWHVKQNYKEYWRVKITITNF 323          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Match: M5W9K2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024172mg PE=4 SV=1)

HSP 1 Score: 526.554 bits (1355), Expect = 0.000e+0
Identity = 248/286 (86.71%), Postives = 267/286 (93.36%), Query Frame = 2
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            EAYDALDPTGNITIKWDVISWTPDGYVAVVTM+NFQQYRHIQ PGWTLGWTWAKKEVIWSM+G+QTTEQGDCS+YKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGV+NSW+QDPANA SSFQ+SVGAAGTTNKTVR+P+NFTLKAPGPGY+CG AKIVKPT+F+TADKRR TQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYN TIV+CPTCACGCQNN+T+ GSCV            GKSTNA PL+QCTSHMCPVR+HWHVK+NYKEYWRVK+TITNF
Sbjct:   35 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMFNFQQYRHIQTPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSRYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWIQDPANAISSFQISVGAAGTTNKTVRLPKNFTLKAPGPGYSCGIAKIVKPTRFLTADKRRWTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNATDPGSCVDCIGP-------GKSTNA-PLVQCTSHMCPVRVHWHVKINYKEYWRVKVTITNF 312          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Match: K4B708_SOLLC (COBRA protein OS=Solanum lycopersicum GN=Solyc02g065770.2 PE=2 SV=1)

HSP 1 Score: 526.554 bits (1355), Expect = 0.000e+0
Identity = 245/288 (85.07%), Postives = 264/288 (91.67%), Query Frame = 2
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAV--LGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            +A+DALDP GNITIKWDVISWTPDGYVAVVTM+NFQQYRHIQAPGWTLGWTWAKKEVIW MMG+QTTEQGDCSK+KGN+PHCCK+DPTVVDLLPGTPYNQQIANCCKGGV+NSW QDP  A SSFQVSVGAAGTTNKTVRVP+NFTLKAPGPGYTCGPAK+VKPTKF + D RRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYN+TIV CPTC CGCQ N T+ G+CV +   HLAS V  LGK+ N  PL+QCTSHMCP+RIHWHVKLNYKEYWRVK+TITNF
Sbjct:   23 DAFDALDPNGNITIKWDVISWTPDGYVAVVTMFNFQQYRHIQAPGWTLGWTWAKKEVIWGMMGAQTTEQGDCSKFKGNIPHCCKRDPTVVDLLPGTPYNQQIANCCKGGVINSWGQDPETAVSSFQVSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVVKPTKFSSGDGRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCTCGCQKNGTQHGNCVDQDEPHLASVVSGLGKN-NYAPLVQCTSHMCPIRIHWHVKLNYKEYWRVKVTITNF 309          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Match: M0S2Q7_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0
Identity = 243/287 (84.67%), Postives = 265/287 (92.33%), Query Frame = 2
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTNA-PPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            EAYD+LDP GNITIKWD++ WTPDGYVAVVT++NFQQYRHIQAPGW LGWTWAKKEVIWSM+G+QTTEQGDCS++KGN PHCCKKDPTVVDLLPGTPYNQQIANCCKGGV+NSWVQDPANAASSFQVSVGAAGTTNKTVRVP+NFTL+APGPGYTCG AKIVKPTKF+T D RR TQA+MTWNVTCTYSQFLAQKTPTCCVSLSSFYN+TIVNCPTC CGCQNN+T+ GSCV   S +LAS + G   N+  PL+QCTSHMCPVR+HWHVKLNYKEYWRVKI ITNF
Sbjct:   40 EAYDSLDPNGNITIKWDIMQWTPDGYVAVVTIFNFQQYRHIQAPGWILGWTWAKKEVIWSMVGAQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWVQDPANAASSFQVSVGAAGTTNKTVRVPKNFTLRAPGPGYTCGIAKIVKPTKFVTQDGRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNATQPGSCVEGDSPYLASVINGPGKNSFTPLVQCTSHMCPVRVHWHVKLNYKEYWRVKIAITNF 326          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL4_ORYSJ (COBRA-like protein 4 OS=Oryza sativa subsp. japonica GN=BC1L9 PE=2 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 1.605e-136
Identity = 187/288 (64.93%), Postives = 227/288 (78.82%), Query Frame = 2
Query:  284 AYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCS--KYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKST-NAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            AYD+LDP GNITIKWDV+ WTPDGY AVVT+ N+QQ+RHIQ PGW LGWTW +KEVIWSM G+Q  EQGDCS  K   NVPH CKK PTVVDLLPG P + QIANCCK G L+++ QDPAN+A+SFQ+ VG +G +N+TVRVP+NF+L APGPGYTC  A IVKP++F++ D RR TQ +MTWNV CTYSQFLAQK P+CCVSLSSF N+  V+CPTC+CGC+N  + +G CV + +  L S + G       PLLQCTSHMCPV+I+WH+ L  KE++RVKIT+TN 
Sbjct:   27 AYDSLDPNGNITIKWDVMQWTPDGYAAVVTLSNYQQFRHIQPPGWQLGWTWQQKEVIWSMYGAQAIEQGDCSMSKEGSNVPHSCKKHPTVVDLLPGAPIDLQIANCCKAGSLSAFSQDPANSAASFQIIVGHSGNSNETVRVPKNFSLMAPGPGYTCSRAMIVKPSRFLSPDGRRATQVLMTWNVICTYSQFLAQKVPSCCVSLSSFDNDKTVDCPTCSCGCRNEKSTTGKCVKKNAPDLQSIIHGPGRWTWQPLLQCTSHMCPVKINWHLMLKDKEHYRVKITVTNL 314          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL6_ARATH (COBRA-like protein 6 OS=Arabidopsis thaliana GN=COBL6 PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.484e-91
Identity = 143/288 (49.65%), Postives = 186/288 (64.58%), Query Frame = 2
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKY--KGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            + YD LDP G I IKWD++  +P  +   VT+ N Q+YRH++ PGW L W W  +EVIW M G++TTEQG+CS +   GN+PHCC + PT+VDLLPG   N Q+ANCC+GGVL S  QD AN  S+F ++VG++    +   +P NF +    PGY+C  A  V PTKF T   RR TQA+ TW   C YSQF +  +P CCVSLS+FY   IV CPTC+CGC ++         E   +L            P+++C+ HMCP+RIHWHVK+NY+EYWRVKIT TNF
Sbjct:   34 DGYDPLDPFGKIIIKWDLLLSSPGQHHVQVTLENMQEYRHVEKPGWKLSWHWLNQEVIWDMKGAETTEQGNCSAFASSGNLPHCCLERPTIVDLLPGASLNVQVANCCRGGVLTSMSQDHANHVSAFHMTVGSSPDGPEEFNMPSNFDIGV--PGYSCDNATSVSPTKFSTDKGRRKTQALATWEAVCVYSQFRSSPSPKCCVSLSAFYYQNIVPCPTCSCGCSSSHCVKD---GELPPYLEQK-HDPDEEVSPVVKCSDHMCPIRIHWHVKVNYREYWRVKITATNF 315          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL7_ORYSJ (COBRA-like protein 7 OS=Oryza sativa subsp. japonica GN=BC1LP1 PE=3 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 5.082e-89
Identity = 140/295 (47.46%), Postives = 188/295 (63.73%), Query Frame = 2
Query:  281 EAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNV-PHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTT-----NKTVRVPRNFTLKAPGPGYTCGPAKIVKPT---KFITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITNF 1138
            +AYD +DP GNI I WD  S   + Y  +V+++N Q YRHI+ PGW L W WA  E+IW M G++ TEQGDC + +G   PHCC+K P +VDL PGTPYN Q+++CC+GGVL+S  Q+   + ++FQ+ VG          ++   +P  F +  PG  Y+C  A  V  T   +F+    R      +TW VTCTYSQF+   +PTCCVSLSSFYN+TIV CP C+CGC  + T +  C+SE       A  G      P+ +CT HMCPVR+HWHVK++Y+EYWRVK+TITN+
Sbjct:   21 DAYDPVDPNGNIIINWDFQS-IENVYTVMVSVHNHQLYRHIEQPGWRLSWRWAGNEIIWGMTGAEATEQGDCHRIRGATRPHCCEKQPVIVDLPPGTPYNNQVSSCCRGGVLSSLTQNNRTSTAAFQMVVGGFRRATYHDGDRGPALPSRFGVGVPG--YSCSNATKVNATSSERFLLPRAR--APCAVTWQVTCTYSQFMEAASPTCCVSLSSFYNSTIVPCPRCSCGCPRSPT-APQCISEGEKPELPA--GDGEAVAPVFRCTDHMCPVRVHWHVKISYREYWRVKVTITNY 307          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL5_ARATH (COBRA-like protein 5 OS=Arabidopsis thaliana GN=COBL5 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.060e-74
Identity = 109/181 (60.22%), Postives = 137/181 (75.69%), Query Frame = 2
Query:  308 GNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSKYKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPANAASSFQVSVGAAGTTNKTVRVPRNFTLKAPGPGYTCGPAKIVKPTKFITADKRRITQAMMTWNVTCTYSQ 850
            GNIT+KWD+++WTPDGYVAVVT YN+Q+ R I  PGW + W   KKEVIW+M+G++TT QG CS +KGN+P  C + PTVVDLLPGTP+NQQIANCCK GVL         + S+FQ+SVG+AG + KT R+P NF   AP   Y CGP+K V+PT+F TADKRRIT A+MTWN+TC + +
Sbjct:   30 GNITVKWDLLNWTPDGYVAVVTAYNYQKQRSI--PGWKMSWRGTKKEVIWNMLGAKTTGQGGCSMFKGNIPQSCVRKPTVVDLLPGTPFNQQIANCCKSGVLK------PGSESAFQLSVGSAGNSVKTARMPANFMFTAPKQQYICGPSKNVRPTRFTTADKRRITAALMTWNITCVFHK 202          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL7_ARATH (COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.675e-28
Identity = 90/312 (28.85%), Postives = 139/312 (44.55%), Query Frame = 2
Query:  308 GNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGS--QTTEQGDC------SKYK----GNVPHCCKKDPTVVDLLPGTPYNQQ----IANCCKGGVLNSWVQDPANAASSFQVSV--GAAGTTNKTVRVPRNFTLKAP-GPGYTCGPAKIVKPTKFITADKRRITQ-AMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVL----------------GKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITN 1135
            G++TI +DV+      Y+A VTM N      +    W L + W + E I++M G+     +  DC        Y+     NV  C ++ PTV+DL P T YN      I  CC+ G +     DP+ ++S FQ+ V           +  P+N+ +     P Y CGP   V P++F+        + A  +W V C  +Q     +P CCVS S+++N++IV C TCACGC +N        +  S  L    L                 K    P  + C  + C V I+WH+  +Y+  W  ++T+ N
Sbjct:  217 GDLTIMYDVVRSYSSNYMAQVTMENHNPLGRLD--NWKLSFDWMRDEFIYTMKGAYPSIVDSSDCVDGPQAKHYQDLDFSNVLSCARR-PTVIDL-PPTKYNDSTFGLIPFCCRNGTILPRSMDPSKSSSVFQMQVYKMPPDLNISALSPPQNWRINGTLNPDYKCGPPVRVSPSQFVDPSGLPSNRTAFASWQVVCNITQ-PKDASPRCCVSFSAYFNDSIVPCKTCACGCSSNKAARACSATAPSLLLPQQALLVPFENRTELTVAWAYLKQRPVPNPMPCGDN-CGVSINWHLATDYRGGWTARVTVFN 522          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL9_ARATH (COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.887e-25
Identity = 90/313 (28.75%), Postives = 141/313 (45.05%), Query Frame = 2
Query:  308 GNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSK---------YKG----NVPHCCKKDPTVVDLLPGTPYNQQIAN---CCKGGVLNSWVQDPANAASSF--QVSVGAAGTTNKTVRVPRNFTLKAP-GPGYTCGPAKIVKPTKFITADKRRITQA-MMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHL--ASAVLGKSTN---------------APPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITN 1135
            G++TI +DVI      Y+  VTM N      +    W L + W + E I  M G+  T   D +K         Y G    +V   C++ P ++DL P    +  + N   CC+ G +   + DP+ + S F  QV+          +  P+N+ +K    P Y+CGP   V PT +         ++   +W + C  +Q    + P CCVS S+F+N++I+ C TCACGC + +    +C +E  S L    A+L    N                P  + C  + C V I+WH+  +Y+  W V+ITI N
Sbjct:  216 GDLTIMYDVIRAYDQNYLTEVTMENHNPLGRLDH--WELSFDWMRDEFIQKMQGAYPTVV-DATKCIFGPQSLIYTGLDFADV-LTCERRPIIIDLPPTKKDDSTLGNIPSCCRNGTILPRIMDPSKSVSVFTMQVAKMPPDFNRSALFPPQNWRIKGTLNPDYSCGPPVRVTPTFYPDPSGMPTNKSSFASWQIVCNITQ-AKTEIPKCCVSFSAFFNDSIIPCNTCACGCVSETRR--TCSAETPSLLIPPDALLLPFENRTALTLAWNALKHKTLPNPMPCGDN-CGVSINWHMASDYRGGWTVRITIFN 520          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: CBL10_ARATH (COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.656e-25
Identity = 90/310 (29.03%), Postives = 139/310 (44.84%), Query Frame = 2
Query:  308 GNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQ-------GDCSKYKGNVPHC----CKKDPTVVDLLPGTPYNQ---QIANCCKGGVLNSWVQDPANAASSFQVSV-GAAGTTNKTVRVPRNFTLKAPG---PGYTCGPAKIVKPTKFIT-ADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSERSSHLASAVLGKSTN---------------APPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITN 1135
            G++ I +DV+      Y+A VT+ N      +    W L + W + E I +M G+ T ++           +Y  ++       C++ P + DL P    +    ++  CCK G L   + DP+ + S FQ+ V       N+T   P     K  G   P Y CGP   V P++F   +    +T A+ +W V C  ++  AQ +  CCVS S+FYNN+ V C TCACGC +  T++ +  S        A+L    N                P  L C  + C V I+WHV  +YK  W  ++T+ N
Sbjct:  229 GDLNIVYDVLQSFDSNYLAQVTIDNDNPLGRLDR--WNLTFEWMRGEFINTMRGAYTHKKDPSECLYSKAGQYYKDLDFSQVMNCQRKPAISDLPPEKKEDNMTGKLPFCCKNGTLLPPIMDPSKSRSMFQLQVFKLPPDLNRTALYPPQH-WKIDGVLNPQYKCGPPVRVDPSQFPDPSGLLAVTYAISSWQVVCNITKPKAQAS-RCCVSFSAFYNNSAVPCNTCACGCNDIDTDTCNANSNPLLLPPDALLVPFDNRTLKAKAWAKQNHMPVPKKLPCPDN-CGVSINWHVSTDYKNGWTARLTVFN 533          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: COBL8_ARATH (COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.458e-23
Identity = 84/312 (26.92%), Postives = 140/312 (44.87%), Query Frame = 2
Query:  308 GNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGS--QTTEQGDC-----SKYKGNVPHC----CKKDPTVVDLLPGTPYNQ----QIANCCKGGVLNSWVQDPANAASSFQVSV--GAAGTTNKTVRVPRNFTLKAP-GPGYTCGPAKIVKPTKF-ITADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVS----------------ERSSHLASA-VLGKSTNAPPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITN 1135
            G++TI +DV       Y A VT+ N      +    W L + W K E ++S  G+     +  DC     +KY  ++       C + P ++DL P T YN     +I  CC+ G +     DP  + S FQ+ V          ++  P+++ +K    P Y CGP   V  ++F  T+       A  +W V C  +Q      P CCVS SS++N++++ C TCACG  ++   + +C +                +  + L +A  + K+   P  L C  + C V I+WH+  +Y+  W  ++T+ N
Sbjct:  210 GDLTIMYDVTRAYQSSYSAQVTIENHNLLGRLD--NWDLSFMWMKDEFLFSTKGAYPSVVDSSDCITGPQAKYYKDLDFSNVMSCARRPHIIDL-PLTKYNDTNVGRIPYCCRNGTILPRSMDPEKSKSVFQIEVYKMPPDLNISSITPPQSWQIKGNLNPDYKCGPPLRVSSSQFPDTSGLPSNKSAFASWQVVCNITQ---PTPPKCCVSFSSYFNDSVIPCKTCACGGCSSDRVARTCSTTSPALPLPYQALLIPFDNRTKLTNAWAVLKNRKVPDPLPCGDN-CGVSINWHLATDYRGGWTARVTLFN 514          
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Match: CBL11_ARATH (COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.887e-23
Identity = 84/310 (27.10%), Postives = 138/310 (44.52%), Query Frame = 2
Query:  308 GNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQG-------DCSKYKGNVPHC----CKKDPTVVDLLPGTPYNQQIAN----CCKGGVLNSWVQDPANAASSFQVSV-GAAGTTNKTVRVP-RNFTLKA-PGPGYTCGPAKIVKPTKFIT-ADKRRITQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCACGCQNNSTESGSCVSER-------------SSHLASAVLGKSTNA--PPLLQCTSHMCPVRIHWHVKLNYKEYWRVKITITN 1135
            G++ I +DV+      Y+A VT+ N      +    W L W W + E I SM G+   E+           ++ G++       C+K P + DL P    +  +      CCK G L     DP+ + + FQ+ V       N+T   P RN+ +     P Y CGP   V  T F   +  +  T A+ +W V C  ++   Q    CCVS S+FYN++ + C TCACGC++  T++ +  + +             +  L + V  K  +   P  L C  + C + ++WH+  +Y   W  ++T+ N
Sbjct:  219 GDLNIIYDVLQAYASSYMAQVTIDNTSPLGRLDH--WNLTWEWMRGEFIHSMRGAYAAEKNTLECLSSKAGQFYGDLDFSQVANCQKKPIIKDL-PAERKDDNVTGKLPFCCKNGTLLPTHMDPSKSKAIFQLQVYKVPPDQNRTAFFPPRNWKIDGIVNPTYKCGPPIRVDATPFPDPSGLQATTYAIASWQVICNITKPKPQAA-RCCVSFSAFYNDSAIPCNTCACGCKDIDTDTCNANARQLLLPTDTLLVPFDNRTLKAKVWAKQKHMAYPKKLPCPDN-CGISLNWHLNSDYGNGWSARVTLFN 523          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078ENA4_BRANA0.000e+078.33BnaA03g39830D protein OS=Brassica napus GN=BnaA03g... [more]
A0A0D3DDH0_BRAOL0.000e+078.33Uncharacterized protein OS=Brassica oleracea var. ... [more]
M5W9K2_PRUPE0.000e+086.71Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
K4B708_SOLLC0.000e+085.07COBRA protein OS=Solanum lycopersicum GN=Solyc02g0... [more]
M0S2Q7_MUSAM0.000e+084.67Uncharacterized protein OS=Musa acuminata subsp. m... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006478 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
COBL4_ORYSJ1.605e-13664.93COBRA-like protein 4 OS=Oryza sativa subsp. japoni... [more]
COBL6_ARATH1.484e-9149.65COBRA-like protein 6 OS=Arabidopsis thaliana GN=CO... [more]
COBL7_ORYSJ5.082e-8947.46COBRA-like protein 7 OS=Oryza sativa subsp. japoni... [more]
COBL5_ARATH1.060e-7460.22COBRA-like protein 5 OS=Arabidopsis thaliana GN=CO... [more]
COBL7_ARATH2.675e-2828.85COBRA-like protein 7 OS=Arabidopsis thaliana GN=CO... [more]
COBL9_ARATH1.887e-2528.75COBRA-like protein 9 OS=Arabidopsis thaliana GN=CO... [more]
CBL10_ARATH8.656e-2529.03COBRA-like protein 10 OS=Arabidopsis thaliana GN=C... [more]
COBL8_ARATH3.458e-2326.92COBRA-like protein 8 OS=Arabidopsis thaliana GN=CO... [more]
CBL11_ARATH7.887e-2327.10COBRA-like protein 11 OS=Arabidopsis thaliana GN=C... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006918COBRA, plantPIRSFPIRSF038122COBRAcoord: 8..320
e-value: 1.1E-175
score: 581.9
IPR006918COBRA, plantPFAMPF04833COBRAcoord: 60..223
e-value: 1.4E-73
score: 246.1
IPR006918COBRA, plantPRODOMPD140986coord: 35..222
e-value: 1.0E-101
score: 947.0
NoneNo IPR availablePANTHERPTHR31673FAMILY NOT NAMEDcoord: 1..320
NoneNo IPR availablePANTHERPTHR31673:SF3COBRA-LIKE EXTRACELLULAR GLYCOSYL-PHOSPHATIDYL INOSITOL-ANCHORED FAMILY PROTEIN-RELATEDcoord: 1..320
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..320
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availableSIGNALP_GRAM_NEGATIVESignalP-noTMSignalP-noTMcoord: 1..36
score: 0.665
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..36
score: 0.477
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..36
score: 0.771

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006478 ID=g.arboreum_cottongen_reftransV1_0006478; Name=g.arboreum_cottongen_reftransV1_0006478; organism=Gossypium arboreum; type=contig; length=1140bp
GGAGCATGTACCTCTCTGTCTCAGACTCTGTACTAAAATGCTTTTATAAG
CTTCACTTGCAACTCAACAGCTGACCTCTATCTTCTCCATTTGATGCGAG
AAGGATCTTTCTTTCTTTATTCTGCACATCTTAACCTTAACCACATCATA
AGATAGAGATCTCTTAAACGATCGAGTTATGGAGACTGTCTTTTCTGCAG
CAAGTAGATCCATTTCCAAGCTCATTAGCTTCACCGCTTTGCTTCTTTTC
TTGTTTTCCTGCTCTACTTTCACTTCTACTGAAGCTTATGATGCGCTTGA
TCCAACTGGAAATATCACTATCAAATGGGACGTAATAAGTTGGACCCCAG
ATGGCTATGTTGCTGTTGTTACAATGTACAATTTCCAACAGTATCGCCAT
ATTCAGGCACCTGGTTGGACATTGGGGTGGACATGGGCCAAAAAGGAAGT
AATCTGGAGCATGATGGGAAGCCAAACCACGGAACAAGGGGATTGTTCAA
AATACAAAGGAAACGTCCCTCATTGCTGTAAAAAGGATCCCACAGTTGTG
GATTTATTGCCTGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAA
AGGGGGGGTATTAAATTCATGGGTTCAAGACCCGGCCAATGCAGCAAGCT
CATTTCAGGTTAGTGTGGGCGCTGCAGGAACGACGAACAAAACTGTGAGA
GTGCCTAGAAACTTTACCCTGAAAGCACCAGGTCCAGGATATACTTGTGG
GCCTGCCAAGATTGTGAAACCCACTAAATTCATAACGGCTGATAAAAGGA
GAATAACTCAAGCTATGATGACATGGAATGTTACATGCACATATTCCCAA
TTCCTGGCTCAAAAGACTCCTACATGTTGCGTCTCGCTCTCTTCCTTCTA
TAATAACACTATCGTGAATTGCCCGACATGTGCTTGTGGCTGTCAGAATA
ACTCAACTGAATCTGGGAGTTGTGTAAGCGAAAGGTCTTCACATTTAGCT
TCAGCTGTTCTGGGCAAATCTACCAATGCACCACCTTTGCTTCAGTGTAC
GAGCCATATGTGTCCAGTTCGAATTCACTGGCATGTTAAGCTCAACTACA
AGGAATACTGGCGTGTGAAGATCACGATCACCAATTTCAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006918COBRA_pln
Vocabulary: Cellular Component
TermDefinition
GO:0031225obsolete anchored component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0010215cellulose microfibril organization
GO:0016049cell growth